Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsNip_03g0328900		OGI:03032210 \| 16/16			Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)			Chr03:12046803-12050984		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		C3H22, OsC3H22
DNA seq		GCTTTGCTTAATAGAGGGAGCGTGAGGTGCACGGTGTGGTGATAGGCCGCGGCTAAGCACCAAAGTTTCGGAAATGGAGCTGCTCGCTGCCGCAGCTCCGGGAAGCGGAGGCTACCGAGCAACCGGACCGAGCCAAAGCAGCGCCAGCTAGTTTTGTTTTTGCTGCGGCAACTGCGCTACTTAAGGCTGTAGGCACTACACAACACCAGCGGAAAAGGAGGGGTAAAGGTGTGTGAGGTGAAGGCGAGGGGAGAAGCGAGAAGCTCGTGAGCAGCAGCGGTGTGTGTGTGTGTGTGTGTGTGTGCGTGGGGCGAAGGGAGGGGAAGAAGAAGAAGGAGAAGGAGAACTTGTTGCTCCGGGCGTTTCTTGGGCGCGGCCATGGACGCCTACGAGGCGACCAAGGTGGTGTTCTCCCGGATCCAGGCGCTGGACCCTGACCACGCCGCCAAGATCATGGGCCTCCTGCTCATCCAGGACCACGGCGACAAGGAGATGATACGCCTCGCCTTCGGCCCCGAGGCGCTGCTCCACAGCGTCATGGCGCAGGCTCGCAAGGAGCTCGCCCTCCTCCCGCCGCCGCCGCCGCCGTCGTCGTCGTCGCCCACCGTGCCGGCGGCCCACTCGCCGTTCCTGCTGTCGCGGCAGAACTCCGGCCGCGGCCCCGCGCCGTCGCCGTCGCCGCTGTCCGCGTCCTCGCCGTCCTCGTGGGCGCAGGCGCAGCCGTTCTCGAGGAGCAATGGGTCCGTGGATGAGGTGGTGGGCGCTGGGGAGGAGCTAATCAGCCCGGCGAACAGCGGGGGAGGCGCCGCGGCGAACGCGCCGCCCTTCTTTCCTCGGGGTGGGGACGTGCTCCTGGACGACTTCCAGCTGCAGGAGCAGCTCGCGTTCCTCAACGAGGGGGGCGTCAACCCCAGCCACCCTCTCCAGGGGTTCGATGGAGCGGAGTGCCGGAGCCCCGGTCCCGGCGAGGGCGGCGGGATGTTCCCGTACGGTCTCGGCTGGGCAAACGGTGGCCCTGGGCACCGCCGGAGCGCGTCGGTCAACGAGCTCTGCCTCGGCGGCGGCAGCAGCGACGGCTTCGGGTGGAAGCCTTGCCTGTACTACGCGCGCGGGTTCTGCAAGAACGGCAGCAGCTGCAGGTTCGTCCACGGCGACGACGCCGCCGCTCTGACGGGCGCCGCCATGGACGCGGCCACCGCCGAGCAGCAGCAGTGCCAGGATTTCCTCCTCCGTTCCAAGAGCCAGCGCCTCGGCCCTGCTGCCTTCCCCTATTCACCCACAGGGTCGCTCCCCGGCTCGCCATCCGCCGCCACCAAGTGCCTCAGCCTCTTGCTGCAGCAGCAGCACAACGACAACCAAAGGTACCGACCGCCTTTTACAACCTCCATATTCCAAGCTCGAAGCTTTCAAAGTTCCAACCTTTGTTGTTTGGTTGCGCGTGTGCAGAGCCGCGGCGGCGGCGGCGCTGATGCTCGGCGGCAGCGACGAGGCGCACAAGTTCATGGGGCGGCCGCGCCTGGACCGCGTCGACTTTGCCAGCATGATGAACCCCGGATCGCGCCAGATTTACCTCACCTTCCCGGCCGACAGCACGTTCCGCGAGGAGGACGTCTCCAACTACTTCAGGTATAATGCGATGTTGCAATGATGTTTCTTCTTTCATGGCGGACTCGGTAGAACGCGATCTGATTGGCATGTTTGCTGTTCTTGGCAATGCGCCCGCGCTGCAGCATCTACGGTCCGGTGCACGACGTGCGCATCCCGTACCAGCAGAAGCGCATGTTCGGGTTCGTCACCTTCGTGTACCCTGAGACGGTGAAGCTGATCTTGGCCAAGGGCAATCCGCATTTCATCTGCGACGCCCGCGTGCTCGTCAAGCCTTACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAGGCACGCTTGGAACACGCTCCGGCGTTTTAATTCCGCATCTTTAAACTGCAACTGTATCCGTGCATGCAGTTTTCCTGGTTGCTTATAATTTTTTTTCCACTCATCTTGCAGGAAACATCAAGGTGACTTCTCCGGCTGCACGACCCCCACTGGCCTGGACGGCAGAGACCCATTCGATCTGCATCAGCTCGGTAAAAATATCCTAGCTCGCTCCGATCGTTTGTGCTAGCTGTGGCAGCACAGCTGTAGTTCATTGTTTCATAGTGGATACTGTTGCTGCAGCTGTAACGCAGCTGCAAGTCGCACAAACGAACAGCCTCAATGCCTTCCTGCTTGATCTTTGGTATGGTGTATTAGAGCGATCTGCTGATGTGAAGTTTGGTGCCTGGCAGGTGCGAGGATGCTGCAGCACTCCAATAGCACAAACGAGATGATGCTTCGTAGGAAACTGGAGGAGCAGCAGCAGGCTGCCGAGCTGCAACAGGCCATCGAACTCCACAGTCGCCGTCTCATGGACCTCCAGCTGCTCGACCTCAAGAATAGAGCCGCAGCTGCTGTCACAACAGCAATGGCGATGACAATTCCCACCGCCAATGCCTTCGGTTCCAGTCAGCCTCTTGCCACCACCATGGTCGAGTCACCGCCTGATTCTGGTATGTGTTACTTCGGTCGGTCTGCCTGTCAAGCATTGTAAGACGAGTTCATCCACTCATTCGACACTACTGATCCTTGTAATTTCTTGGTCGTTTATAGGCGAGCAGCTCAAGGGAACAGGTTACTTCACAGAAGAGAGGAAAATGGTCAACGGAGGAGGTGATAAGGAAGAATCTGCTGGTGAGGCGAGCCTGAATGCTGATAGCGACCAAAGGTGGATCTTACTAAACTACACTAGACAGACCATCATCATCATTCTGTTTGCTTATTATTCTTGCAGTTAGCTTTCATGATTTGATGCACATAGAAGCTGAAAAGGTTGGGCTGCTTCAGTGGCTCATGGCTTTCATTTGATATGGATATTCTGCAGCTTGGAGCACAATTTGCCGGACAGCCCGTTTGCTTCGCCGACTAAGTCCTCTGTCTCAGCTCACCAAAGTTTCACCACCACTGATACCGGTGTCGTCGCGACAAGTAGCTGCAGTGCATCTCATGTAGGCATCAGCGCGGGCACTAATGCTGGAGGTGGAATCAACCATCTGCGGCCCTCTACTTTGGATATACCTTCGCCAAGAGACTTCTTCTCGGTTTCCAGGTATGGCATGTACTGTGATTATATTGATGGATCCGATATCTTGTGATCGATGCTTGAAATGATTTGGTGAACGCAATAAGCAGGCTGGCCTCTGATCACGGAGCGATTGGGATGTAAAGTTCTCTGCAATGGATGAGTGAATCCCCCAGCCTAATCATAGTAAGCACTTAATCCTTCCTTTATTCCCACTATGCTTCCAAAATAATAAGCCTTTCACCTTCTGATTTTGCTGTCTTGTTTTCTTTCCGCTCCTTTTTTCTATTTGTCTGTGACAGGAACACAAGAAGCAAAAGAAAAGCGATAGTGGAATATAGGAGAAAAGGAGTGAAGTGTCAGCATAGTGTTAGCTCCCTTGTTTATTTCTTTTTGGTTGCCCTTTTTAGTGGGTAGCTCTATTAAAACCACAAGTGAAGATGCCATTAGCCTTTGACTAGGAAAAAAAGCCAGTAGATGCAGACATGCAGTGTTGTGAGATACTTAATATATATAAGCAATCCAGTGTTACCCCCTTATAATATTAGATATACTAGTAGTACTCAATTACAACTGCCATCAACAACATATATAGTTGATGTTTACCCAGTTGTTCATCTAAGTTGTAGGCACTAACTGTGAAGTAACTAGTAAACAAGGCCAGTAACAGCTTCTATATAAGTCAGATGTAACACAGGTGCATCCTGCTAGCTTCAGGGGATGCAAATATCATGGACAAGTGCAAATAATCCCAGAAGAAGCCGGAGAAGGATCACATGGCCATGGCAAGAAGTGGTCTGTGAAGTATTTTTACCTGTGCTAGTACTAAAATATCTCTTTGGTTCTCCTACTTGGCCATGTTGTTTGATCAGGAGAGTGGCAAGATCCCACTCACACCTCCTCGGTCAGCTGCCGACCAGCGTTATTTGCGCCCCTCAGCAGATGCAGGCCACTTGTACAAAGGACACCTTTTCTTTGTTCTTTGAACCTCCTTTTTATTTTTTTTTTCAGATCTTGCTGAATGAATCTGTAGATTACTATACC More
CDS seq		ATGGACGCCTACGAGGCGACCAAGGTGGTGTTCTCCCGGATCCAGGCGCTGGACCCTGACCACGCCGCCAAGATCATGGGCCTCCTGCTCATCCAGGACCACGGCGACAAGGAGATGATACGCCTCGCCTTCGGCCCCGAGGCGCTGCTCCACAGCGTCATGGCGCAGGCTCGCAAGGAGCTCGCCCTCCTCCCGCCGCCGCCGCCGCCGTCGTCGTCGTCGCCCACCGTGCCGGCGGCCCACTCGCCGTTCCTGCTGTCGCGGCAGAACTCCGGCCGCGGCCCCGCGCCGTCGCCGTCGCCGCTGTCCGCGTCCTCGCCGTCCTCGTGGGCGCAGGCGCAGCCGTTCTCGAGGAGCAATGGGTCCGTGGATGAGGTGGTGGGCGCTGGGGAGGAGCTAATCAGCCCGGCGAACAGCGGGGGAGGCGCCGCGGCGAACGCGCCGCCCTTCTTTCCTCGGGGTGGGGACGTGCTCCTGGACGACTTCCAGCTGCAGGAGCAGCTCGCGTTCCTCAACGAGGGGGGCGTCAACCCCAGCCACCCTCTCCAGGGGTTCGATGGAGCGGAGTGCCGGAGCCCCGGTCCCGGCGAGGGCGGCGGGATGTTCCCGTACGGTCTCGGCTGGGCAAACGGTGGCCCTGGGCACCGCCGGAGCGCGTCGGTCAACGAGCTCTGCCTCGGCGGCGGCAGCAGCGACGGCTTCGGGTGGAAGCCTTGCCTGTACTACGCGCGCGGGTTCTGCAAGAACGGCAGCAGCTGCAGGTTCGTCCACGGCGACGACGCCGCCGCTCTGACGGGCGCCGCCATGGACGCGGCCACCGCCGAGCAGCAGCAGTGCCAGGATTTCCTCCTCCGTTCCAAGAGCCAGCGCCTCGGCCCTGCTGCCTTCCCCTATTCACCCACAGGGTCGCTCCCCGGCTCGCCATCCGCCGCCACCAAGTGCCTCAGCCTCTTGCTGCAGCAGCAGCACAACGACAACCAAAGAGCCGCGGCGGCGGCGGCGCTGATGCTCGGCGGCAGCGACGAGGCGCACAAGTTCATGGGGCGGCCGCGCCTGGACCGCGTCGACTTTGCCAGCATGATGAACCCCGGATCGCGCCAGATTTACCTCACCTTCCCGGCCGACAGCACGTTCCGCGAGGAGGACGTCTCCAACTACTTCAGCATCTACGGTCCGGTGCACGACGTGCGCATCCCGTACCAGCAGAAGCGCATGTTCGGGTTCGTCACCTTCGTGTACCCTGAGACGGTGAAGCTGATCTTGGCCAAGGGCAATCCGCATTTCATCTGCGACGCCCGCGTGCTCGTCAAGCCTTACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAGGAAACATCAAGGTGACTTCTCCGGCTGCACGACCCCCACTGGCCTGGACGGCAGAGACCCATTCGATCTGCATCAGCTCGGTGCGAGGATGCTGCAGCACTCCAATAGCACAAACGAGATGATGCTTCGTAGGAAACTGGAGGAGCAGCAGCAGGCTGCCGAGCTGCAACAGGCCATCGAACTCCACAGTCGCCGTCTCATGGACCTCCAGCTGCTCGACCTCAAGAATAGAGCCGCAGCTGCTGTCACAACAGCAATGGCGATGACAATTCCCACCGCCAATGCCTTCGGTTCCAGTCAGCCTCTTGCCACCACCATGGTCGAGTCACCGCCTGATTCTGGCGAGCAGCTCAAGGGAACAGGTTACTTCACAGAAGAGAGGAAAATGGTCAACGGAGGAGGTGATAAGGAAGAATCTGCTGGTGAGGCGAGCCTGAATGCTGATAGCGACCAAAGCTTGGAGCACAATTTGCCGGACAGCCCGTTTGCTTCGCCGACTAAGTCCTCTGTCTCAGCTCACCAAAGTTTCACCACCACTGATACCGGTGTCGTCGCGACAAGTAGCTGCAGTGCATCTCATGTAGGCATCAGCGCGGGCACTAATGCTGGAGGTGGAATCAACCATCTGCGGCCCTCTACTTTGGATATACCTTCGCCAAGAGACTTCTTCTCGGTTTCCAGCAGGCTGGCCTCTGATCACGGAGCGATTGGGATGTAA More
Protein seq		MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKELALLPPPPPPSSSSPTVPAAHSPFLLSRQNSGRGPAPSPSPLSASSPSSWAQAQPFSRSNGSVDEVVGAGEELISPANSGGGAAANAPPFFPRGGDVLLDDFQLQEQLAFLNEGGVNPSHPLQGFDGAECRSPGPGEGGGMFPYGLGWANGGPGHRRSASVNELCLGGGSSDGFGWKPCLYYARGFCKNGSSCRFVHGDDAAALTGAAMDAATAEQQQCQDFLLRSKSQRLGPAAFPYSPTGSLPGSPSAATKCLSLLLQQQHNDNQRAAAAAALMLGGSDEAHKFMGRPRLDRVDFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKHQGDFSGCTTPTGLDGRDPFDLHQLGARMLQHSNSTNEMMLRRKLEEQQQAAELQQAIELHSRRLMDLQLLDLKNRAAAAVTTAMAMTIPTANAFGSSQPLATTMVESPPDSGEQLKGTGYFTEERKMVNGGGDKEESAGEASLNADSDQSLEHNLPDSPFASPTKSSVSAHQSFTTTDTGVVATSSCSASHVGISAGTNAGGGINHLRPSTLDIPSPRDFFSVSSRLASDHGAIGM
Function		Zinc finger CCCH domain-containing protein 22 [UniProtKB/Swiss-Prot:Q10M00]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsNip_03g0328900	OsNip_03t0328900-01	Chr03	12046803	12050984	+	RAP2018-11-26
CDS seq	ATGGACGCCTACGAGGCGACCAAGGTGGTGTTCTCCCGGATCCAGGCGCTGGACCCTGACCACGCCGCCAAGATCATGGGCCTCCTGCTCATCCAGGACCACGGCGACAAGGAGATGATACGCCTCGCCTTCGGCCCCGAGGCGCTGCTCCACAGCGTCATGGCGCAGGCTCGCAAGGAGCTCGCCCTCCTCCCGCCGCCGCCGCCGCCGTCGTCGTCGTCGCCCACCGTGCCGGCGGCCCACTCGCCGTTCCTGCTGTCGCGGCAGAACTCCGGCCGCGGCCCCGCGCCGTCGCCGTCGCCGCTGTCCGCGTCCTCGCCGTCCTCGTGGGCGCAGGCGCAGCCGTTCTCGAGGAGCAATGGGTCCGTGGATGAGGTGGTGGGCGCTGGGGAGGAGCTAATCAGCCCGGCGAACAGCGGGGGAGGCGCCGCGGCGAACGCGCCGCCCTTCTTTCCTCGGGGTGGGGACGTGCTCCTGGACGACTTCCAGCTGCAGGAGCAGCTCGCGTTCCTCAACGAGGGGGGCGTCAACCCCAGCCACCCTCTCCAGGGGTTCGATGGAGCGGAGTGCCGGAGCCCCGGTCCCGGCGAGGGCGGCGGGATGTTCCCGTACGGTCTCGGCTGGGCAAACGGTGGCCCTGGGCACCGCCGGAGCGCGTCGGTCAACGAGCTCTGCCTCGGCGGCGGCAGCAGCGACGGCTTCGGGTGGAAGCCTTGCCTGTACTACGCGCGCGGGTTCTGCAAGAACGGCAGCAGCTGCAGGTTCGTCCACGGCGACGACGCCGCCGCTCTGACGGGCGCCGCCATGGACGCGGCCACCGCCGAGCAGCAGCAGTGCCAGGATTTCCTCCTCCGTTCCAAGAGCCAGCGCCTCGGCCCTGCTGCCTTCCCCTATTCACCCACAGGGTCGCTCCCCGGCTCGCCATCCGCCGCCACCAAGTGCCTCAGCCTCTTGCTGCAGCAGCAGCACAACGACAACCAAAGAGCCGCGGCGGCGGCGGCGCTGATGCTCGGCGGCAGCGACGAGGCGCACAAGTTCATGGGGCGGCCGCGCCTGGACCGCGTCGACTTTGCCAGCATGATGAACCCCGGATCGCGCCAGATTTACCTCACCTTCCCGGCCGACAGCACGTTCCGCGAGGAGGACGTCTCCAACTACTTCAGCATCTACGGTCCGGTGCACGACGTGCGCATCCCGTACCAGCAGAAGCGCATGTTCGGGTTCGTCACCTTCGTGTACCCTGAGACGGTGAAGCTGATCTTGGCCAAGGGCAATCCGCATTTCATCTGCGACGCCCGCGTGCTCGTCAAGCCTTACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAGGAAACATCAAGGTGACTTCTCCGGCTGCACGACCCCCACTGGCCTGGACGGCAGAGACCCATTCGATCTGCATCAGCTCGGTGCGAGGATGCTGCAGCACTCCAATAGCACAAACGAGATGATGCTTCGTAGGAAACTGGAGGAGCAGCAGCAGGCTGCCGAGCTGCAACAGGCCATCGAACTCCACAGTCGCCGTCTCATGGACCTCCAGCTGCTCGACCTCAAGAATAGAGCCGCAGCTGCTGTCACAACAGCAATGGCGATGACAATTCCCACCGCCAATGCCTTCGGTTCCAGTCAGCCTCTTGCCACCACCATGGTCGAGTCACCGCCTGATTCTGGCGAGCAGCTCAAGGGAACAGGTTACTTCACAGAAGAGAGGAAAATGGTCAACGGAGGAGGTGATAAGGAAGAATCTGCTGGTGAGGCGAGCCTGAATGCTGATAGCGACCAAAGCTTGGAGCACAATTTGCCGGACAGCCCGTTTGCTTCGCCGACTAAGTCCTCTGTCTCAGCTCACCAAAGTTTCACCACCACTGATACCGGTGTCGTCGCGACAAGTAGCTGCAGTGCATCTCATGTAGGCATCAGCGCGGGCACTAATGCTGGAGGTGGAATCAACCATCTGCGGCCCTCTACTTTGGATATACCTTCGCCAAGAGACTTCTTCTCGGTTTCCAGCAGGCTGGCCTCTGATCACGGAGCGATTGGGATGTAA More
Protein seq	MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKELALLPPPPPPSSSSPTVPAAHSPFLLSRQNSGRGPAPSPSPLSASSPSSWAQAQPFSRSNGSVDEVVGAGEELISPANSGGGAAANAPPFFPRGGDVLLDDFQLQEQLAFLNEGGVNPSHPLQGFDGAECRSPGPGEGGGMFPYGLGWANGGPGHRRSASVNELCLGGGSSDGFGWKPCLYYARGFCKNGSSCRFVHGDDAAALTGAAMDAATAEQQQCQDFLLRSKSQRLGPAAFPYSPTGSLPGSPSAATKCLSLLLQQQHNDNQRAAAAAALMLGGSDEAHKFMGRPRLDRVDFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKHQGDFSGCTTPTGLDGRDPFDLHQLGARMLQHSNSTNEMMLRRKLEEQQQAAELQQAIELHSRRLMDLQLLDLKNRAAAAVTTAMAMTIPTANAFGSSQPLATTMVESPPDSGEQLKGTGYFTEERKMVNGGGDKEESAGEASLNADSDQSLEHNLPDSPFASPTKSSVSAHQSFTTTDTGVVATSSCSASHVGISAGTNAGGGINHLRPSTLDIPSPRDFFSVSSRLASDHGAIGM More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsNip_03g0328900	OsNip_03t0328900-02	Chr03	12047013	12050524	+	RAP2018-11-26
CDS seq	ATGGACGCCTACGAGGCGACCAAGGTGGTGTTCTCCCGGATCCAGGCGCTGGACCCTGACCACGCCGCCAAGATCATGGGCCTCCTGCTCATCCAGGACCACGGCGACAAGGAGATGATACGCCTCGCCTTCGGCCCCGAGGCGCTGCTCCACAGCGTCATGGCGCAGGCTCGCAAGGAGCTCGCCCTCCTCCCGCCGCCGCCGCCGCCGTCGTCGTCGTCGCCCACCGTGCCGGCGGCCCACTCGCCGTTCCTGCTGTCGCGGCAGAACTCCGGCCGCGGCCCCGCGCCGTCGCCGTCGCCGCTGTCCGCGTCCTCGCCGTCCTCGTGGGCGCAGGCGCAGCCGTTCTCGAGGAGCAATGGGTCCGTGGATGAGGTGGTGGGCGCTGGGGAGGAGCTAATCAGCCCGGCGAACAGCGGGGGAGGCGCCGCGGCGAACGCGCCGCCCTTCTTTCCTCGGGGTGGGGACGTGCTCCTGGACGACTTCCAGCTGCAGGAGCAGCTCGCGTTCCTCAACGAGGGGGGCGTCAACCCCAGCCACCCTCTCCAGGGGTTCGATGGAGCGGAGTGCCGGAGCCCCGGTCCCGGCGAGGGCGGCGGGATGTTCCCGTACGGTCTCGGCTGGGCAAACGGTGGCCCTGGGCACCGCCGGAGCGCGTCGGTCAACGAGCTCTGCCTCGGCGGCGGCAGCAGCGACGGCTTCGGGTGGAAGCCTTGCCTGTACTACGCGCGCGGGTTCTGCAAGAACGGCAGCAGCTGCAGGTTCGTCCACGGCGACGACGCCGCCGCTCTGACGGGCGCCGCCATGGACGCGGCCACCGCCGAGCAGCAGCAGTGCCAGGATTTCCTCCTCCGTTCCAAGAGCCAGCGCCTCGGCCCTGCTGCCTTCCCCTATTCACCCACAGGGTCGCTCCCCGGCTCGCCATCCGCCGCCACCAAGTGCCTCAGCCTCTTGCTGCAGCAGCAGCACAACGACAACCAAAGAGCCGCGGCGGCGGCGGCGCTGATGCTCGGCGGCAGCGACGAGGCGCACAAGTTCATGGGGCGGCCGCGCCTGGACCGCGTCGACTTTGCCAGCATGATGAACCCCGGATCGCGCCAGATTTACCTCACCTTCCCGGCCGACAGCACGTTCCGCGAGGAGGACGTCTCCAACTACTTCAGCATCTACGGTCCGGTGCACGACGTGCGCATCCCGTACCAGCAGAAGCGCATGTTCGGGTTCGTCACCTTCGTGTACCCTGAGACGGTGAAGCTGATCTTGGCCAAGGGCAATCCGCATTTCATCTGCGACGCCCGCGTGCTCGTCAAGCCTTACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAGGAAACATCAAGGTGACTTCTCCGGCTGCACGACCCCCACTGGCCTGGACGGCAGAGACCCATTCGATCTGCATCAGCTCGGTGCGAGGATGCTGCAGCACTCCAATAGCACAAACGAGATGATGCTTCGTAGGAAACTGGAGGAGCAGCAGCAGGCTGCCGAGCTGCAACAGGCCATCGAACTCCACAGTCGCCGTCTCATGGACCTCCAGCTGCTCGACCTCAAGAATAGAGCCGCAGCTGCTGTCACAACAGCAATGGCGATGACAATTCCCACCGCCAATGCCTTCGGTTCCAGTCAGCCTCTTGCCACCACCATGGTCGAGTCACCGCCTGATTCTGGCGAGCAGCTCAAGGGAACAGGTTACTTCACAGAAGAGAGGAAAATGGTCAACGGAGGAGGTGATAAGGAAGAATCTGCTGGTGAGGCGAGCCTGAATGCTGATAGCGACCAAAGCTTGGAGCACAATTTGCCGGACAGCCCGTTTGCTTCGCCGACTAAGTCCTCTGTCTCAGCTCACCAAAGTTTCACCACCACTGATACCGGTGTCGTCGCGACAAGTAGCTGCAGTGCATCTCATGTAGGCATCAGCGCGGGCACTAATGCTGGAGGTGGAATCAACCATCTGCGGCCCTCTACTTTGGATATACCTTCGCCAAGAGACTTCTTCTCGGTTTCCAGGCTGGCCTCTGATCACGGAGCGATTGGGATGTAA More
Protein seq	MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKELALLPPPPPPSSSSPTVPAAHSPFLLSRQNSGRGPAPSPSPLSASSPSSWAQAQPFSRSNGSVDEVVGAGEELISPANSGGGAAANAPPFFPRGGDVLLDDFQLQEQLAFLNEGGVNPSHPLQGFDGAECRSPGPGEGGGMFPYGLGWANGGPGHRRSASVNELCLGGGSSDGFGWKPCLYYARGFCKNGSSCRFVHGDDAAALTGAAMDAATAEQQQCQDFLLRSKSQRLGPAAFPYSPTGSLPGSPSAATKCLSLLLQQQHNDNQRAAAAAALMLGGSDEAHKFMGRPRLDRVDFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKHQGDFSGCTTPTGLDGRDPFDLHQLGARMLQHSNSTNEMMLRRKLEEQQQAAELQQAIELHSRRLMDLQLLDLKNRAAAAVTTAMAMTIPTANAFGSSQPLATTMVESPPDSGEQLKGTGYFTEERKMVNGGGDKEESAGEASLNADSDQSLEHNLPDSPFASPTKSSVSAHQSFTTTDTGVVATSSCSASHVGISAGTNAGGGINHLRPSTLDIPSPRDFFSVSRLASDHGAIGM More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsNip_03g0328900	OsNip_03t0328900-03	Chr03	12047133	12050505	+	IsoSeq
CDS seq	ATGGAGCGGAGTGCCGGAGCCCCGGTCCCGGCGAGGGCGGCGGGATGTTCCCGTACGGTCTCGGCTGGGCAAACGGTGGCCCTGGGCACCGCCGGAGCGCGTCGGTCAACGAGCTCTGCCTCGGCGGCGGCAGCAGCGACGGCTTCGGGTGGAAGCCTTGCCTGTACTACGCGCGCGGGTTCTGCAAGAACGGCAGCAGCTGCAGGTTCGTCCACGGCGACGACGCCGCCG More
Protein seq	MERSAGAPVPARAAGCSRTVSAGQTVALGTAGARRSTSSASAAAAATASGGSLACTTRAGSARTAAAAGSSTATTPP

Event Type	Chromosome	Start	End	Strand	Alternative mRNAs	Total mRNAs	Source
A3	Chr03	12049967	12050051	+	OsNip_03t0328900-01	OsNip_03t0328900-02,OsNip_03t0328900-03,OsNip_03t0328900-01	All

Expression

	Leaf	Root	Panicle
FPKM	0.325459	1.116924	2.502357

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_07g0682400	RBH	2.524903	3.839534	10.752971
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os03g21140	RBH	0.194612	0.707710	0.579127
Nipponbare \| IRGSP 1.0 \| RAP-db	Os03g0328900	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_03g0016390	RBH	0.168223	0.988377	4.138298
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_03g0016230	RBH	0.033831	0.441465	0.682210
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_03g0016250	RBH	0.000000	2.028389	4.146045
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_03g0016240	RBH	0.053127	0.248509	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_03g0016030	RBH	1.500993	4.777896	8.192354
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_03G0199900	RBH	7.4678085	25.0026295	31.864853
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_03g0015910	RBH	0.219892	0.510763	0.275503
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_03G0204200	RBH	7.5922105	13.7831195	113.054363
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_03g0016170	RBH	0.101816	0.135756	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_03g0016180	RBH	0.496637	1.660231	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_03g0016220	RBH	0.000000	5.164929	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_03g0016100	RBH	0.166329	0.664733	0.779650
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_03g0016020	RBH	0.114577	7.753381	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_03G015980	RBH	0.0	1.587770	3.506322
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_03g0015890	RBH	0.000000	10.044559	1.956532

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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