Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsAzu_03g0016390 OGI:03032210 | 16/16 Azucena | AzucenaRS1 | Gramene(+IsoSeq) Chr03:12250215-12253848
Gene Symbol C3H22, OsC3H22
DNA seq

GATAGGCCGCGGCTAAGCACCAAAGTTTCGGAAATGGAGCTGCTCGCTGCCGCAGCTCCGGGAAGCGGAGGCTACCGAGCAACCGGACCGAGCCAAAGCAGCGCCAGCTAGTTTTGTTTTTGCTGCGGCAACTGCGCTACTTAAGGCTGTAGGCACTACACAACACCAGCGGAAAAGGAGGGGTAAAGGTGTGTGAGGTGAAGGCGAGGGGAGAAGCGAGAAGCTCGTGAGCAGCAGCGGTGTGTGTGTGTGTGTGTGTGTGCGTGGGGCGGAGGGAGGGGAAGAAGAAGAAGGAGAAGGAGAACTTGTTGCTCCGGGCGTTTCTTGGGCGCGGCCATGGACGCCTACGAGGCGACCAAGGTGGTGTTCTCCCGGATCCAGGCGCTGGACCCTGACCACGCCGCCAAGATCATGGGCCTCCTGCTCATCCAGGACCACGGCGACAAGGAGATGATACGCCTCGCCTTCGGCCCCGAGGCGCTGCTCCACAGCGTCATGGCGCAGGCTCGCAAGGAGCTCGCCCTCCTCCCGCCGCCGCCGCCGCCGTCGTCGTCGTCGCCCACCGTGCCGGCGGCCCACTCGCCGTTCCTGCTGTCGCGGCAGAACTCCGGCCGCGGCCCCGCGCCGTCGCCGTCGCCGCTGTCCGCGTCCTCGCCGTCCTCGTGGGCGCAGGCGCAGCCGTTCTCGAGGAGCAATGGGTCCGTGGATGAGGTGGTGGGCGCTGGGGAGGAGCTAATCAGCCCGGCGAACAGCGGGGGAGGCGCCGCGGCGAACGCGCCGCCCTTCTTTCCTCGGGGTGGGGACGTGCTCCTGGACGACTTCCAGCTGCAGGAGCAGCTCGCGTTCCTCAACGAGGGGGGCGTCAACCCCAGCCACCCTCTCCAGGGGTTCGATGGAGCGGAGTGCCGGAGCCCCGGTCCCGGCGAGGGCGGCGGGATGTTCCCGTACGGTCTCGGCTGGGCAAACGGTGGCCCTGGGCACCGCCGGAGCGCGTCGGTCAACGAGCTCTGCCTCGGCGGCGGCAGCAGCGACGGCTTCGGGTGGAAGCCTTGCCTGTACTACGCGCGCGGGTTCTGCAAGAACGGCAGCAGCTGCAGGTTCGTCCACGGCGACGACGCCGCCGCTCTGACGGGCGCCGCCATGGACGCGGCCACCGCCGAGCAGCAGCAGTGCCAGGATTTCCTCCTCCGTTCCAAGAGCCAGCGCCTCGGCCCTGCTGCCTTCCCCTATTCACCCACAGGGTCGCTCCCCGGCTCGCCATCCGCCGCCACCAAGTGCCTCAGCCTCTTGCTGCAGCAGCAGCACAACGACAACCAAAGGTACCGACCGCCTTTTACAACCTCCATATTCCAAGCTCGAAGCTTTCAAAGTTCCAACCTTTGTTGTTTGGTTGCGCGTGTGCAGAGCCGCGGCGGCGGCGGCGCTGATGCTCGGCGGCAGCGACGAGGCGCACAAGTTCATGGGGCGGCCGCGCCTGGACCGCGTCGACTTTGCCAGCATGATGAACCCCGGATCGCGCCAGATTTACCTCACCTTCCCGGCCGACAGCACGTTCCGCGAGGAGGACGTCTCCAACTACTTCAGGTATAATGCGATGTTGCAATGATGCTTCTTCTTTCATGGCGGACTCGGTAGAACGCGATCTGATTGGCATGTTTGCTGTTCTTGGCAATGCGCCCGCGCTGCAGCATCTACGGTCCGGTGCACGACGTGCGCATCCCGTACCAGCAGAAGCGCATGTTCGGGTTCGTCACCTTCGTGTACCCTGAGACGGTGAAGCTGATCTTGGCCAAGGGCAATCCGCATTTCATCTGCGACGCCCGCGTGCTCGTCAAGCCTTACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAGGCACGCTTGGAACACGCTCCGGCGTTTTAATTCCGCATCTTTAAACTGCAACTGTATCCGTGCATGCAGTTTTCCTGGTTGCTTATAATTTTTTTTCCACTCATCTTGCAGGAAACATCAAGGTGACTTCTCCGGCTGCACGACCCCCACTGGCCTGGACGGCAGAGACCCATTCGATCTGCATCAGCTCGGTAAAAATATCCTAGCTCGCTCCGATCGTTTGTGCTAGCTGTGGCAGCACAGCTGTAGTTCATTGTTTCATAGTGGATACTGTTGCTGCAGCTGTAACGCAGCTGCAAGTCGCACAAACGAACAGCCTCAATGCCTTCCTGCTTGATCTTTGGTATGGTGTATTAGAGCGATCTGCTGATGTGAAGTTTGGTGCCTGGCAGGTGCGAGGATGCTGCAGCACTCCAATAGCACAAACGAGATGATGCTTCGTAGGAAACTGGAGGAGCAGCAGCAGGCTGCCGAGCTGCAACAGGCCATCGAACTCCACAGTCGCCGTCTCATGGACCTCCAGCTGCTCGACCTCAAGAATAGAGCCGCAGCTGCTGTCACAACAGCAATGGCGATGACAATTCCCACCGCCAATGCCTTCGGTTCCAGTCAGCCTCTTGCCACCACCATGGTCGAGTCACCGCCTGATTCTGGTATGTGTTACTTCGGTCGGTCTGCCTGTCAAGCATTGTAAGACGAGTTCATCCACTCATTCGACACTACTGATCCTTGTAATTTCTTGGTCGTTTATAGGCGAGCAGCTCAAGGGAACAGGTTACTTCACAGAAGAGAGGAAAATGGTCAACGGAGGAGGTGATAAGGAAGAATCTGCTGGTGAGGCGAGCCTGAATGCTGATAGCGACCAAAGGTGGATCTTACTAAACTACACTAGACAGACCATCATCATCATTCTGTTTGCTTATTATTCTTGCAGTTAGCTTTCATGATTTGATGCACATAGAAGCTGAAAAGGTTGGGCTGCTTCAGTGGCTCATGGCTTTCATTTGATATGGATATTCTGCAGCTTGGAGCACAATTTGCCGGACAGCCCGTTTGCTTCGCCGACTAAGTCCTCTGTCTCAGCTCACCAAAGTTTCACCACCACTGATACCGGTGTCGTCGCGACAAGTAGCTGCAGTGCATCTCATGTAGGCATCAGCGCGGGCACTAATGCTGGAGGTGGAATCAACCATCTGCGGCCCTCTACTTTGGATATACCTTCGCCAAGAGACTTCTTCTCGGTTTCCAGGTATGGCATGTACTGTGATTATATTGATGGATCCGATATCTTGTGATCGATGCTTGAAATGATTTGGTGAACGCAATAAGCAGGCTGGCCTCTGATCACGGAGCGATTGGGATGTAAAGTTCTCTGCAATGGATGAGTGAATCCCCCAGCCTAATCATAGTAAGCACTTAATCCTTCCTTTATTCCCACTATGCTTCCAAAATAATAAGCCTTTCACCTTCTGATTTTGCTGTCTTGTTTTCTTTCCGCTCCTTTTTTCTATTTGTCTGTGACAGGAACACAAGAAGCAAAAGAAAAGCGATAGTGGAATATAGGAGAAAAGGAGTGAAGTGTCAGCATAGTGTTAGCTCCCTTGTTTATTTCTTTTTGGTTGCCCTTTTTAGTGGGTAGCTCTATTAAAACCACAAGTGAAGATGCCATTAGCCTTTGACTAGGAAAAAAAGCCAGTAGATGCAGACATGCAGTGTTGTGAGATACTTAATATATATAAGCAATCCAGTGTTACCCCCTT

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CDS seq

ATGGACGCCTACGAGGCGACCAAGGTGGTGTTCTCCCGGATCCAGGCGCTGGACCCTGACCACGCCGCCAAGATCATGGGCCTCCTGCTCATCCAGGACCACGGCGACAAGGAGATGATACGCCTCGCCTTCGGCCCCGAGGCGCTGCTCCACAGCGTCATGGCGCAGGCTCGCAAGGAGCTCGCCCTCCTCCCGCCGCCGCCGCCGCCGTCGTCGTCGTCGCCCACCGTGCCGGCGGCCCACTCGCCGTTCCTGCTGTCGCGGCAGAACTCCGGCCGCGGCCCCGCGCCGTCGCCGTCGCCGCTGTCCGCGTCCTCGCCGTCCTCGTGGGCGCAGGCGCAGCCGTTCTCGAGGAGCAATGGGTCCGTGGATGAGGTGGTGGGCGCTGGGGAGGAGCTAATCAGCCCGGCGAACAGCGGGGGAGGCGCCGCGGCGAACGCGCCGCCCTTCTTTCCTCGGGGTGGGGACGTGCTCCTGGACGACTTCCAGCTGCAGGAGCAGCTCGCGTTCCTCAACGAGGGGGGCGTCAACCCCAGCCACCCTCTCCAGGGGTTCGATGGAGCGGAGTGCCGGAGCCCCGGTCCCGGCGAGGGCGGCGGGATGTTCCCGTACGGTCTCGGCTGGGCAAACGGTGGCCCTGGGCACCGCCGGAGCGCGTCGGTCAACGAGCTCTGCCTCGGCGGCGGCAGCAGCGACGGCTTCGGGTGGAAGCCTTGCCTGTACTACGCGCGCGGGTTCTGCAAGAACGGCAGCAGCTGCAGGTTCGTCCACGGCGACGACGCCGCCGCTCTGACGGGCGCCGCCATGGACGCGGCCACCGCCGAGCAGCAGCAGTGCCAGGATTTCCTCCTCCGTTCCAAGAGCCAGCGCCTCGGCCCTGCTGCCTTCCCCTATTCACCCACAGGGTCGCTCCCCGGCTCGCCATCCGCCGCCACCAAGTGCCTCAGCCTCTTGCTGCAGCAGCAGCACAACGACAACCAAAGAGCCGCGGCGGCGGCGGCGCTGATGCTCGGCGGCAGCGACGAGGCGCACAAGTTCATGGGGCGGCCGCGCCTGGACCGCGTCGACTTTGCCAGCATGATGAACCCCGGATCGCGCCAGATTTACCTCACCTTCCCGGCCGACAGCACGTTCCGCGAGGAGGACGTCTCCAACTACTTCAGCATCTACGGTCCGGTGCACGACGTGCGCATCCCGTACCAGCAGAAGCGCATGTTCGGGTTCGTCACCTTCGTGTACCCTGAGACGGTGAAGCTGATCTTGGCCAAGGGCAATCCGCATTTCATCTGCGACGCCCGCGTGCTCGTCAAGCCTTACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAGGAAACATCAAGGTGACTTCTCCGGCTGCACGACCCCCACTGGCCTGGACGGCAGAGACCCATTCGATCTGCATCAGCTCGGTGCGAGGATGCTGCAGCACTCCAATAGCACAAACGAGATGATGCTTCGTAGGAAACTGGAGGAGCAGCAGCAGGCTGCCGAGCTGCAACAGGCCATCGAACTCCACAGTCGCCGTCTCATGGACCTCCAGCTGCTCGACCTCAAGAATAGAGCCGCAGCTGCTGTCACAACAGCAATGGCGATGACAATTCCCACCGCCAATGCCTTCGGTTCCAGTCAGCCTCTTGCCACCACCATGGTCGAGTCACCGCCTGATTCTGGCGAGCAGCTCAAGGGAACAGGTTACTTCACAGAAGAGAGGAAAATGGTCAACGGAGGAGGTGATAAGGAAGAATCTGCTGGTGAGGCGAGCCTGAATGCTGATAGCGACCAAAGCTTGGAGCACAATTTGCCGGACAGCCCGTTTGCTTCGCCGACTAAGTCCTCTGTCTCAGCTCACCAAAGTTTCACCACCACTGATACCGGTGTCGTCGCGACAAGTAGCTGCAGTGCATCTCATGTAGGCATCAGCGCGGGCACTAATGCTGGAGGTGGAATCAACCATCTGCGGCCCTCTACTTTGGATATACCTTCGCCAAGAGACTTCTTCTCGGTTTCCAGGCTGGCCTCTGATCACGGAGCGATTGGGATGTAA

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Protein seq

MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKELALLPPPPPPSSSSPTVPAAHSPFLLSRQNSGRGPAPSPSPLSASSPSSWAQAQPFSRSNGSVDEVVGAGEELISPANSGGGAAANAPPFFPRGGDVLLDDFQLQEQLAFLNEGGVNPSHPLQGFDGAECRSPGPGEGGGMFPYGLGWANGGPGHRRSASVNELCLGGGSSDGFGWKPCLYYARGFCKNGSSCRFVHGDDAAALTGAAMDAATAEQQQCQDFLLRSKSQRLGPAAFPYSPTGSLPGSPSAATKCLSLLLQQQHNDNQRAAAAAALMLGGSDEAHKFMGRPRLDRVDFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKHQGDFSGCTTPTGLDGRDPFDLHQLGARMLQHSNSTNEMMLRRKLEEQQQAAELQQAIELHSRRLMDLQLLDLKNRAAAAVTTAMAMTIPTANAFGSSQPLATTMVESPPDSGEQLKGTGYFTEERKMVNGGGDKEESAGEASLNADSDQSLEHNLPDSPFASPTKSSVSAHQSFTTTDTGVVATSSCSASHVGISAGTNAGGGINHLRPSTLDIPSPRDFFSVSRLASDHGAIGM

Function Zinc finger CCCH domain-containing protein 22 [UniProtKB/Swiss-Prot:Q10M00]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsAzu_03g0016390 OsAzu_03g0016390.01 Chr03 12250215 12253709 + NAM
CDS seq

ATGGACGCCTACGAGGCGACCAAGGTGGTGTTCTCCCGGATCCAGGCGCTGGACCCTGACCACGCCGCCAAGATCATGGGCCTCCTGCTCATCCAGGACCACGGCGACAAGGAGATGATACGCCTCGCCTTCGGCCCCGAGGCGCTGCTCCACAGCGTCATGGCGCAGGCTCGCAAGGAGCTCGCCCTCCTCCCGCCGCCGCCGCCGCCGTCGTCGTCGTCGCCCACCGTGCCGGCGGCCCACTCGCCGTTCCTGCTGTCGCGGCAGAACTCCGGCCGCGGCCCCGCGCCGTCGCCGTCGCCGCTGTCCGCGTCCTCGCCGTCCTCGTGGGCGCAGGCGCAGCCGTTCTCGAGGAGCAATGGGTCCGTGGATGAGGTGGTGGGCGCTGGGGAGGAGCTAATCAGCCCGGCGAACAGCGGGGGAGGCGCCGCGGCGAACGCGCCGCCCTTCTTTCCTCGGGGTGGGGACGTGCTCCTGGACGACTTCCAGCTGCAGGAGCAGCTCGCGTTCCTCAACGAGGGGGGCGTCAACCCCAGCCACCCTCTCCAGGGGTTCGATGGAGCGGAGTGCCGGAGCCCCGGTCCCGGCGAGGGCGGCGGGATGTTCCCGTACGGTCTCGGCTGGGCAAACGGTGGCCCTGGGCACCGCCGGAGCGCGTCGGTCAACGAGCTCTGCCTCGGCGGCGGCAGCAGCGACGGCTTCGGGTGGAAGCCTTGCCTGTACTACGCGCGCGGGTTCTGCAAGAACGGCAGCAGCTGCAGGTTCGTCCACGGCGACGACGCCGCCGCTCTGACGGGCGCCGCCATGGACGCGGCCACCGCCGAGCAGCAGCAGTGCCAGGATTTCCTCCTCCGTTCCAAGAGCCAGCGCCTCGGCCCTGCTGCCTTCCCCTATTCACCCACAGGGTCGCTCCCCGGCTCGCCATCCGCCGCCACCAAGTGCCTCAGCCTCTTGCTGCAGCAGCAGCACAACGACAACCAAAGAGCCGCGGCGGCGGCGGCGCTGATGCTCGGCGGCAGCGACGAGGCGCACAAGTTCATGGGGCGGCCGCGCCTGGACCGCGTCGACTTTGCCAGCATGATGAACCCCGGATCGCGCCAGATTTACCTCACCTTCCCGGCCGACAGCACGTTCCGCGAGGAGGACGTCTCCAACTACTTCAGCATCTACGGTCCGGTGCACGACGTGCGCATCCCGTACCAGCAGAAGCGCATGTTCGGGTTCGTCACCTTCGTGTACCCTGAGACGGTGAAGCTGATCTTGGCCAAGGGCAATCCGCATTTCATCTGCGACGCCCGCGTGCTCGTCAAGCCTTACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAGGAAACATCAAGGTGACTTCTCCGGCTGCACGACCCCCACTGGCCTGGACGGCAGAGACCCATTCGATCTGCATCAGCTCGGTGCGAGGATGCTGCAGCACTCCAATAGCACAAACGAGATGATGCTTCGTAGGAAACTGGAGGAGCAGCAGCAGGCTGCCGAGCTGCAACAGGCCATCGAACTCCACAGTCGCCGTCTCATGGACCTCCAGCTGCTCGACCTCAAGAATAGAGCCGCAGCTGCTGTCACAACAGCAATGGCGATGACAATTCCCACCGCCAATGCCTTCGGTTCCAGTCAGCCTCTTGCCACCACCATGGTCGAGTCACCGCCTGATTCTGGCGAGCAGCTCAAGGGAACAGGTTACTTCACAGAAGAGAGGAAAATGGTCAACGGAGGAGGTGATAAGGAAGAATCTGCTGGTGAGGCGAGCCTGAATGCTGATAGCGACCAAAGCTTGGAGCACAATTTGCCGGACAGCCCGTTTGCTTCGCCGACTAAGTCCTCTGTCTCAGCTCACCAAAGTTTCACCACCACTGATACCGGTGTCGTCGCGACAAGTAGCTGCAGTGCATCTCATGTAGGCATCAGCGCGGGCACTAATGCTGGAGGTGGAATCAACCATCTGCGGCCCTCTACTTTGGATATACCTTCGCCAAGAGACTTCTTCTCGGTTTCCAGGCTGGCCTCTGATCACGGAGCGATTGGGATGTAA

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Protein seq

MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKELALLPPPPPPSSSSPTVPAAHSPFLLSRQNSGRGPAPSPSPLSASSPSSWAQAQPFSRSNGSVDEVVGAGEELISPANSGGGAAANAPPFFPRGGDVLLDDFQLQEQLAFLNEGGVNPSHPLQGFDGAECRSPGPGEGGGMFPYGLGWANGGPGHRRSASVNELCLGGGSSDGFGWKPCLYYARGFCKNGSSCRFVHGDDAAALTGAAMDAATAEQQQCQDFLLRSKSQRLGPAAFPYSPTGSLPGSPSAATKCLSLLLQQQHNDNQRAAAAAALMLGGSDEAHKFMGRPRLDRVDFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKHQGDFSGCTTPTGLDGRDPFDLHQLGARMLQHSNSTNEMMLRRKLEEQQQAAELQQAIELHSRRLMDLQLLDLKNRAAAAVTTAMAMTIPTANAFGSSQPLATTMVESPPDSGEQLKGTGYFTEERKMVNGGGDKEESAGEASLNADSDQSLEHNLPDSPFASPTKSSVSAHQSFTTTDTGVVATSSCSASHVGISAGTNAGGGINHLRPSTLDIPSPRDFFSVSRLASDHGAIGM

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Gene Transcript Chromosome Start End Strand Source
OsAzu_03g0016390 OsAzu_03g0016390.02 Chr03 12250388 12253848 + IsoSeq
CDS seq

ATGGAGCGGAGTGCCGGAGCCCCGGTCCCGGCGAGGGCGGCGGGATGTTCCCGTACGGTCTCGGCTGGGCAAACGGTGGCCCTGGGCACCGCCGGAGCGCGTCGGTCAACGAGCTCTGCCTCGGCGGCGGCAGCAGCGACGGCTTCGGGTGGAAGCCTTGCCTGTACTACGCGCGCGGGTTCTGCAAGAACGGCAGCAGCTGCAGGTTCGTCCACGGCGACGACGCCGCCG

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Protein seq

MERSAGAPVPARAAGCSRTVSAGQTVALGTAGARRSTSSASAAAAATASGGSLACTTRAGSARTAAAAGSSTATTPP

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.168223 0.988377 4.138298

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_03g0328900 RBH 0.325459 1.116924 2.502357
Nipponbare | IRGSP 1.0 | MSU LOC_Os03g21140 RBH 0.194612 0.707710 0.579127
Nipponbare | IRGSP 1.0 | RAP-db Os03g0328900 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_07g0027950 RBH 2.942695 14.450002 23.248264
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_03g0016230 RBH 0.033831 0.441465 0.682210
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_03g0016250 RBH 0.000000 2.028389 4.146045
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_03g0016240 RBH 0.053127 0.248509 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_03g0016030 RBH 1.500993 4.777896 8.192354
Minghui 63 | MH63RS3 | HZAU OsMH63_03G0199900 RBH 7.4678085 25.0026295 31.864853
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_03g0015910 RBH 0.219892 0.510763 0.275503
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_03G0204200 RBH 7.5922105 13.7831195 113.054363
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_03g0016170 RBH 0.101816 0.135756 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_03g0016180 RBH 0.496637 1.660231 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_03g0016220 RBH 0.000000 5.164929 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_03g0016100 RBH 0.166329 0.664733 0.779650
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_03g0016020 RBH 0.114577 7.753381 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_03G015980 RBH 0.0 1.587770 3.506322
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_03g0015900 RBH 0.000000 8.501481 5.776103
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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