Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0279600 | OGI:03025910 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:9520046-9521110 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGTATATGGAACAAATACTCCCATCTCAAAACCCAGTTGGGTACACTGTGTATCATAACAGAAGCAAAGTATATAGCATTTCTGATCAGAACAAAAGAAACCGCCCTCAGCGGCAACTACAGAAGAAAAGGAAAGATCAAATCATTATTTTGCTTCTGTTTCTCGGATTGATGCCTCGCTTCCATCAATACACGCGCTAGAGCTAAAGAGGAGTTTTATTACCTCGCAGGCGCCGCAGGGGCATTGACGACGTTCCTGCGCACCACCCTGGGTGCCCCACCCTTGCCATTCTCCTTGGAGCCATTGGCGCCGCTGCCAGTGTCGCCCAGGATCAAATCGCGGAGGCCCGAGCTGAGCTCCTTCTCCCTCTTCTCCCTCTCCTTCTCCTTCGCCCTGGCGGTGGCGGCGGCGAGGGGCTCGAAGTGGTTGCCGTAGATGTACTCCGCGGAATAGCCATCCTCGTCGTCGAAGATCATGACGTGGCCGTGCCACTCCCAGACGCGGTACACACCGCCGGAATCGTCGTGGAAGCCGACGCAGATGTGGTGGTCGCCGACGGCGACGGACTGGCCGGAGTTGGGCTTGAGCGCCTCCTCCGCCTCCCCGGCGAGCACGAGCCGCACGATCTCCTTCTCCAGCTTGGCCTCCTCCCTCGCCAGCGTCCGCCGCCGCCTCGCCTCCCCGGAGACCACCTCCCCATCGGATCCCTCCCCTTCCCCATCCTCGCCGTCGTCGTCATCGTCGGAGGCCCCCGCGGCGGCCGACAGCGCGGCGAACTCGTTGAGGAGGAACTCGTCGAGGTCCTGGGTGAGGAAGGAGTTGGTGTCGAGGAAGGGCGGGCGGAGCTGGACCCGGCTCATCAGGTTCTGGAGGAACAGCGCGTCCACCGGCGCCGCTGCCGCCCCCGCCGTGGCGGCGGAGGGGCTAGGTGGCTGCGGCGGCGGCGGCGGCGGCGAAGCCATGGGCGCAGTAGGGTTTTGGGTTTTGGGTGGGCTCGTGTGGATGACGCGGACTCGCCGTGGATGAGGACGAGGAGACGGGAGGAGACGAGGAGATATTTTCCTC
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| CDS seq | ATGGCTTCGCCGCCGCCGCCGCCGCCGCAGCCACCTAGCCCCTCCGCCGCCACGGCGGGGGCGGCAGCGGCGCCGGTGGACGCGCTGTTCCTCCAGAACCTGATGAGCCGGGTCCAGCTCCGCCCGCCCTTCCTCGACACCAACTCCTTCCTCACCCAGGACCTCGACGAGTTCCTCCTCAACGAGTTCGCCGCGCTGTCGGCCGCCGCGGGGGCCTCCGACGATGACGACGACGGCGAGGATGGGGAAGGGGAGGGATCCGATGGGGAGGTGGTCTCCGGGGAGGCGAGGCGGCGGCGGACGCTGGCGAGGGAGGAGGCCAAGCTGGAGAAGGAGATCGTGCGGCTCGTGCTCGCCGGGGAGGCGGAGGAGGCGCTCAAGCCCAACTCCGGCCAGTCCGTCGCCGTCGGCGACCACCACATCTGCGTCGGCTTCCACGACGATTCCGGCGGTGTGTACCGCGTCTGGGAGTGGCACGGCCACGTCATGATCTTCGACGACGAGGATGGCTATTCCGCGGAGTACATCTACGGCAACCACTTCGAGCCCCTCGCCGCCGCCACCGCCAGGGCGAAGGAGAAGGAGAGGGAGAAGAGGGAGAAGGAGCTCAGCTCGGGCCTCCGCGATTTGATCCTGGGCGACACTGGCAGCGGCGCCAATGGCTCCAAGGAGAATGGCAAGGGTGGGGCACCCAGGGTGGTGCGCAGGAACGTCGTCAATGCCCCTGCGGCGCCTGCGAGGTAA
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| Protein seq | MASPPPPPPQPPSPSAATAGAAAAPVDALFLQNLMSRVQLRPPFLDTNSFLTQDLDEFLLNEFAALSAAAGASDDDDDGEDGEGEGSDGEVVSGEARRRRTLAREEAKLEKEIVRLVLAGEAEEALKPNSGQSVAVGDHHICVGFHDDSGGVYRVWEWHGHVMIFDDEDGYSAEYIYGNHFEPLAAATARAKEKEREKREKELSSGLRDLILGDTGSGANGSKENGKGGAPRVVRRNVVNAPAAPAR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0279600 | OsNip_03t0279600-02 | Chr03 | 9520046 | 9521042 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCTTCGCCGCCGCCGCCGCCGCCGCAGCCACCTAGCCCCTCCGCCGCCACGGCGGGGGCGGCAGCGGCGCCGGTGGACGCGCTGTTCCTCCAGAACCTGATGAGCCGGGTCCAGCTCCGCCCGCCCTTCCTCGACACCAACTCCTTCCTCACCCAGGACCTCGACGAGTTCCTCCTCAACGAGTTCGCCGCGCTGTCGGCCGCCGCGGGGGCCTCCGACGATGACGACGACGGCGAGGATGGGGAAGGGGAGGGATCCGATGGGGAGGTGGTCTCCGGGGAGGCGAGGCGGCGGCGGACGCTGGCGAGGGAGGAGGCCAAGCTGGAGAAGGAGATCGTGCGGCTCGTGCTCGCCGGGGAGGCGGAGGAGGCGCTCAAGCCCAACTCCGGCCAGTCCGTCGCCGTCGGCGACCACCACATCTGCGTCGGCTTCCACGACGATTCCGGCGGTGTGTACCGCGTCTGGGAGTGGCACGGCCACGTCATGATCTTCGACGACGAGGATGGCTATTCCGCGGAGTACATCTACGGCAACCACTTCGAGCCCCTCGCCGCCGCCACCGCCAGGGCGAAGGAGAAGGAGAGGGAGAAGAGGGAGAAGGAGCTCAGCTCGGGCCTCCGCGATTTGATCCTGGGCGACACTGGCAGCGGCGCCAATGGCTCCAAGGAGAATGGCAAGGGTGGGGCACCCAGGGTGGTGCGCAGGAACGTCGTCAATGCCCCTGCGGCGCCTGCGAGGTAA
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| Protein seq | MASPPPPPPQPPSPSAATAGAAAAPVDALFLQNLMSRVQLRPPFLDTNSFLTQDLDEFLLNEFAALSAAAGASDDDDDGEDGEGEGSDGEVVSGEARRRRTLAREEAKLEKEIVRLVLAGEAEEALKPNSGQSVAVGDHHICVGFHDDSGGVYRVWEWHGHVMIFDDEDGYSAEYIYGNHFEPLAAATARAKEKEREKREKELSSGLRDLILGDTGSGANGSKENGKGGAPRVVRRNVVNAPAAPAR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0279600 | OsNip_03t0279600-01 | Chr03 | 9520046 | 9521110 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCTTCGCCGCCGCCGCCGCCGCCGCAGCCACCTAGCCCCTCCGCCGCCACGGCGGGGGCGGCAGCGGCGCCGGTGGACGCGCTGTTCCTCCAGAACCTGATGAGCCGGGTCCAGCTCCGCCCGCCCTTCCTCGACACCAACTCCTTCCTCACCCAGGACCTCGACGAGTTCCTCCTCAACGAGTTCGCCGCGCTGTCGGCCGCCGCGGGGGCCTCCGACGATGACGACGACGGCGAGGATGGGGAAGGGGAGGGATCCGATGGGGAGGTGGTCTCCGGGGAGGCGAGGCGGCGGCGGACGCTGGCGAGGGAGGAGGCCAAGCTGGAGAAGGAGATCGTGCGGCTCGTGCTCGCCGGGGAGGCGGAGGAGGCGCTCAAGCCCAACTCCGGCCAGTCCGTCGCCGTCGGCGACCACCACATCTGCGTCGGCTTCCACGACGATTCCGGCGGTGTGTACCGCGTCTGGGAGTGGCACGGCCACGTCATGATCTTCGACGACGAGGATGGCTATTCCGCGGAGTACATCTACGGCAACCACTTCGAGCCCCTCGCCGCCGCCACCGCCAGGGCGAAGGAGAAGGAGAGGGAGAAGAGGGAGAAGGAGCTCAGCTCGGGCCTCCGCGATTTGATCCTGGGCGACACTGGCAGCGGCGCCAATGGCTCCAAGGAGAATGGCAAGGGTGGGGCACCCAGGGTGGTGCGCAGGAACGTCGTCAATGCCCCTGCGGCGCCTGCGAGGTAA
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| Protein seq | MASPPPPPPQPPSPSAATAGAAAAPVDALFLQNLMSRVQLRPPFLDTNSFLTQDLDEFLLNEFAALSAAAGASDDDDDGEDGEGEGSDGEVVSGEARRRRTLAREEAKLEKEIVRLVLAGEAEEALKPNSGQSVAVGDHHICVGFHDDSGGVYRVWEWHGHVMIFDDEDGYSAEYIYGNHFEPLAAATARAKEKEREKREKELSSGLRDLILGDTGSGANGSKENGKGGAPRVVRRNVVNAPAAPAR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.591586 | 5.232018 | 5.582566 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g17140 | RBH | 3.200561 | 3.097484 | 1.327241 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0279600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0013080 | RBH | 2.656188 | 12.087909 | 5.548404 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0012890 | RBH | 0.000000 | 2.150812 | 1.276165 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0012910 | RBH | 5.315444 | 10.057168 | 3.345385 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0012880 | RBH | 0.651323 | 0.410734 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0012740 | RBH | 13.344379 | 27.542648 | 8.146653 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0162500 | RBH | 11.290549 | 11.5040625 | 10.141621 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0012640 | RBH | 0.839561 | 0.337416 | 0.696383 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0163800 | RBH | 7.9912255 | 10.7595605 | 16.1928365 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0012810 | RBH | 0.775022 | 0.018795 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0012820 | RBH | 1.278291 | 15.100679 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0012880 | RBH | 14.267570 | 3.289890 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0012750 | RBH | 1.684240 | 1.453719 | 0.976675 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0012720 | RBH | 1.911214 | 8.813530 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G012670 | RBH | 1.850255 | 10.474174 | 2.825819 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0012540 | RBH | 5.063901 | 12.529313 | 8.773074 |
