Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsCMeo_03g0012910 OGI:03025910 | 16/16 CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) Chr03:9577717-9584847
Gene Symbol OsbHLH078, -
DNA seq

ctactgattactgaaccagatcctcttctgatcctcgacgtccgtgcggcggcgaccgccctctgccgcgaggctcacgacggccggcgacagcgccgccacgcacaggcctcgccggcgaagctccgtcgccgtgcctcctcctcctccggcatcctgcagccacaaaactgttgcaattgcagtaaagaaggacatgacatggctgcaactttcaagaacagaaaatacgacctgctgctgcgacgatgcagaggaggagcttgttccagggtaaggcgctgtcagaatctgaagaggaagtgaaaaacactgagattctgcaggctttttttatcatgtgaaacacgcgaaaacgacttagtccattgggttgcagatgccagggttcaccaaattattttgggtggggttatcatcattttacggtaaaacggttattatggtaaccacgtgattatcgtgaaaattgtactattaccacgaggtttatcgtgattttaaaaactcgtaaggttttgtaaaccttggtcatggactcgtcgtgcctggctacgatgtctgacgcgcgattacctggatttgttggtggagttgccgtatgcaggcggctgcttcgtggagcaccgatgcggtgtctgtctgctcggacgatcaggttcagaaaattaacgctctcagatcagcaaaatcactgatgattaacatggatagaaaacactagctaggtcgttgattaattaaccttgccgtaaggtgaaactaactgctgcagagctgtgattctgtcgcccagtttctggctcctcttcttacatgttgcctgcatttacgatggcagtgagagggaaaagatagccaatatgaacgagagaaagcccctacactgacaacactgatgaagtgatgattacaagaactgtaattgtttcactatcagatactcaaaaatgatactaccttcgtagtttgatttcttggctttgcatggcacttcaccccatgccttggaggttgtgtcgtcgccgtagttgctgtcttgagcctcttggagctcctgaaaccgccgtcgccggtcatcggctccccggccgccgtccatctcaccaaatgctgacgacataaacaagcatttcccaaaccacgtaaaaattaataacacaaacttcactggcttgatgatattatcacaaggtttcaggtaggcgaagaggattattacatacagcagcagaagtagcagcaattggctgggaatagctgaactgcgcgagtgcaggcctggcacctccgccatagatcgagctctctcctgttgttatcagttcatcagaaaaatagtatcaaagtaaaacaatctcaccatccacgcagaaagcatttcgaaagagtggagttacccaagtagctctctgaacttctcgtggtgaaaaacgttggtgactgaagattctgaagcgacggcgagaagctcatgtgatggaacaggtcatagtccgcggcgatcctgaccaaagagacgaagaaattttcagtggtttcatgcgaattgaaagatcgtataccatttccattatctaaaaaaagatattgaattgaaagatcatttgaaggccctcactaccgaatccaacacttacattctgtcaaagcctacagttgtggaaggtgaattagacgcttcgcatttcactgcaactgaagaaacctgttaaataaattcgacagagaagaaaataaaatgtcatggcagttgggaaatttaccgtagtcgtcagtgaacggtatgagcagagacgatggtgcagagcagttccacattatctatgattatgctctcagcaccagaagcctgcaggtttcaacacctagagaattacagtaaagatcacaagttcacaacgttcagttgcagttaagaggaaaaagaatcaatagtagtttagagtagacaagaaacagagaagacccattgctcaaaagttaaaagaagaaccagaacagagtcaagctcttctggatgaatttgtattatttttcagagacacacaattcatcacaatcaatccaataaactaagacctgcccatctttaaaatcccagaatacaccacaagatccagaaatcacagaaagaaacagaagcagctatcaagctcacaggtttgacacgaacaagaacaaccaagctcgtgtctttctactgaattctcttgcaatgcagatggcccaaacaaagtagaacataaaccggcaaaagttcttacaatgggaggatgcaggcacaggcaggcactagatcgcaagagcaatgtcgacgctacggcagagaaggcatagcaatggctgctaaatactcctctgctgctacgtgtgtggcgtaagcagagcgcttaattgcgtcgtttgcttggcctccctctcctctcctctcagatgctgccgttttaactcaggctgctgctaattataacctccaagctttgccaaatcaaacacatgagatgggaagagatcacaagcatgccgagaaatttcagaggagcacacgggaaaactgggcggatcgattggccacaattaataggagggcctgccacttctcacaaaaattaaataagttcagctccggcctctcatggccgtttcgccttgacttctttttacatgcagatatgattagtagctgattagtactagcactttattactactacaacctctaataatgataatcacatcagtatttttttttctgagagagatttgcactgctgcaaactgcgttactgtctgttagtattttactgatcagttgctggcgtcttgctgcaccggctgtggcaggatcgttgcagcagtgagagaggaaaaaaagagatgttttttggattaggctcttgtctctccctctccctgccacgtggcaacgagtgtcaggtaggacgatgctggtctggaactctgaatctggttgaccattgctcgatccctcattggttttgtttaacatgtcaggatcagttcaagctcaagataatgattaagtaaatagacaaaaatgaccgatgaaccaaacaccgttagagcaggtataatagcacttcttcagtcggtgataacaacatccacatcatcgttgtattacgtggaggagggagaaaacatgaaaacgaagagagcgagtgcttgctgaagcgccgggtggtagcacgataatttaggccatattaaacattttatatggtttgtgggcctccggttcagtgttagttttatgctcaacagctcaagcacggtggaccatagatatagagcttggttttgttcatctgtgcatataataattaagtccaattcacgcttatataaagccaacttatagtttgtcctttgtataagcaatctacaatcatcaactctagatgacatggacatatgttaccgccgtcaaaaagctttgctagccttgctcttagggagggcttatggccggccaattgtttaacctttgcatcgcaatcagctgcctgcaatgcttcttgatttctcaggggtgtttgcatcatctaaaatgtgtaccactctcgaggcgacaagattctgcaagctgagtctcaacagctgatgacacgtcgtctttcatgtaaccagaaaataatgataataactgaatgccagtagaaccctgaaggagaggttgggatgattaaaagatgcaaatcaccttcaacatcaagatgaaaatgtttgcaagtgttgacgtataaagagaagctttacgtttagcagagggaaactgacgcaaatcgttagccagaaatgtgtcagccatgagtatcaatgttcggtatcctgcatcattttggggttgggtgttagaaaattgggtcagttcgaacggccgagtattatttcacagccgactagattgtcaaacacacgtttcctttctagctcatcggttagcatgtccagatcatcatggcgtatccatctacataactgctgtttctgaagtctgaacaaacaacacatgtaacacaactaaacaagaaatagatgcatggagcaaacttaccgatgcctgtgaatgcaatgggaaaaaaaaacccagtaaattctaggggaagaggttattccaataaaagagggctctacctttctaatgtcagagataaatatttcattaactcatgtttgtttgatgcgatcaccatgatttgatttattagatgctatgcggccagctttacgcaaaagcttgtcttcactcctgcctgccgtctttgcaatctagaatagttcctgccgataagtcccagtaccagtgttcgcagcttttatctgaaatctatgcagcaactgtttcaaagtcatggctcaatattaagaaaaagtaaaacaactttgactcagtttgtgttcatcacaaagatcgattcatcagtggacaaaactagtgctgttgcagtccaatttgttttagaagtgccaataataatgtctaaggatgcaagtgactcaaacagtgctaaatgacagaagacacatcccccacattaactatagtggctattgtatcaaccacttgaggattcaaacctactgaaaactctatttgatggaagtaaagtaagcagaaaacggcagatgaactcaatgtcattcaaaccattctataaagcttacatttggctgatagcaccagaagaatcagagatgagagatctatgtggcaggaacagtttgatataattaataagtttccagtattcacaaaactcctatcccaaaggcacaccttcataatgttttagtgaaaaaggatttatctcacattccacttgacacctatgaaagtatgctaatgacaaaggaaaaaggtacgaaaaactcagctcccaaatatgaggtaggcctctaacaagttttcatgtgcaacacctcacccaaatacaactgacaaggtaacttgtcagcccaatcaagactatatggttcatttcagaaataactactattcaatagatatatctactgtacttcaaatgggaatttctccataaatcctaacaagccaacttgttctataggaggcatgtatgctgctattctgcttctctctactgtacgctacataactctcttgatgggcagagaaacagagccttattgtgcaatgatctctgaacagaagatgtctgatcccatttatagcttatggaaaagcgatgttttatgcaaacttgtagattgaaaaatggaaagcatatgtgaacttagcatcagcatgtacggtcttgattattgagcttaaacatttgagaagcctatatgatcaatcaacaaaagaaattctgaaattcatctaaatctcactgaaaaactaacagaagagcttccagtttatgaaatatcgatcaacaaaaacaacttcaaaaatcatctaaatttcatcgacagatgaacaaaggaaccaccatttcaatattctatgaaatgcaaagttgcaaactgatccatagtaagaagacttccaccttgtgccctccccgtgtgaatccctttgcaattgcataaggttagaatatccagtagtaaagtattcaagacttttggacggtgtccatagaacatattcaggttgcattaccattgataaacaggagaacgaataatcggtttcaaagcacacaaaaatagacaagaataaaccagcgagtcacctaacatgtttattggtttcttcgcatttatcgaagggaagtcatgttaaatgtggtgcttactccccttataggcttataaggcttataaatagaagccgggaggtacgattccgtctattcaccacctaaattcaggtataggagtccagcacactcaatgtttccataatagcaaagcttatgcaaacaatttgacaagtacctagcacagctgcacagggaagaccattctctccaatttgtattgaaagcatgaaccaaattctttacaatagtgataataactcataagttcacaatcgacaggtgcagcaagcataagttctttcacatgagcagcaaaaatttaagcacataatggaacagcatatgtgtagtatatggaacaaatactcccatctcaaaacccagttgggtacactgtgtatcataacagaagcaaagtatatagcatttctgatcagaacaaaagaaaccgccctcagcggcaactacagaagaaaaggaaagatcaaatcattattttgcttctgtttctcggattgatgcctcgcttccatcaatacacgcgctagagctaaagaggagttttattacctcgcaggcgccgcaggggcattgacgacgttcctgcgcaccaccctgggtgccccacccttgccattctccttggagccattggcgccgctgccagtgtcgcccaggatcaaatcgcggaggcccgagctgagctccttctccctcttctccctctccttctccttcgccctggcggtggcggcggcgaggggctcgaagtggttgccgtagatgtactccgcggaatagccatcctcgtcgtcgaagatcatgacgtggccgtgccactcccagacgcggtacacaccgccggaatcgtcgtggaagccgacgcagatgtggtggtcgccgacggcgacggactggccggagttgggcttgagcgcctcctccgcctccccggcgagcacgagccgcacgatctccttctccagcttggcctcctccctcgccagcgtccgccgccgcctcgcctccccggagaccacctccccatcggatccctccccttccccatcctcgccgtcgtcgtcatcgtcggaggcccccgcggcggccgacagcgcggcgaactcgttgaggaggaactcgtcgaggtcctgggtgaggaaggagttggtgtcgaggaagggcgggcggagctggacccggctcatcaggttctggaggaacagcgcgtccaccggcgccgctgccgcccccgccgtggcggcggaggggctaggtggctgcggcggcggcggcggcggcgaagccatgggcgcagtagggttttgggttttgggtgggctcgtgtggatgacgcggactcgccgtggat

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CDS seq

atggcttcgccgccgccgccgccgccgcagccacctagcccctccgccgccacggcgggggcggcagcggcgccggtggacgcgctgttcctccagaacctgatgagccgggtccagctccgcccgcccttcctcgacaccaactccttcctcacccaggacctcgacgagttcctcctcaacgagttcgccgcgctgtcggccgccgcgggggcctccgacgatgacgacgacggcgaggatggggaaggggagggatccgatggggaggtggtctccggggaggcgaggcggcggcggacgctggcgagggaggaggccaagctggagaaggagatcgtgcggctcgtgctcgccggggaggcggaggaggcgctcaagcccaactccggccagtccgtcgccgtcggcgaccaccacatctgcgtcggcttccacgacgattccggcggtgtgtaccgcgtctgggagtggcacggccacgtcatgatcttcgacgacgaggatggctattccgcggagtacatctacggcaaccacttcgagcccctcgccgccgccaccgccagggcgaaggagaaggagagggagaagagggagaaggagctcagctcgggcctccgcgatttgatcctgggcgacactggcagcggcgccaatggctccaaggagaatggcaagggtggggcacccagggtggtgcgcaggaacgtcgtcaatgcccctgcggcgcctgcgagatctctcatctctgattcttctggtgctatcagccaaatgcatcgacttcagaaacagcagttatgtagatggatacgccatgatgatctggacatgctaaccgatgagctagaaaggaaacgataccgaacattgatactcatggctgacacatttctggctaacgatttgcgtcagtttccctctgctaaacgtaaagcttctctttatacgtcaacacttgcaaacattttcatcttgatgttgaagggttctactggcattcagttattatcattattttctggttacatgaaagacgacgtgtcatcagctgttgagactcagcttgcagaatcttgtcgcctcgagagtggtgttgaaacctgcaggcttctggtttcttcagttgcagtgaaatgcgaagcgtctaattcaccttccacaactgtaggctttgacagaatgatcgccgcggactatgacctgttccatcacatgagcttctcgccgtcgcttcagaatcttcagtcaccaacgtttttcaccacgagaagttcagagagctacttgggagagagctcgatctatggcggaggtgccaggcctgcactcgcgcagttcagctattcccagccaattgctgctacttctgctgctcatttggtgagatggacggcggccggggagccgatgaccggcgacggcggtttcaggagctccaagaggctcaagacagcaactacggcgacgacacaacctccaaggcatggggtgaagtgccatgcaaagccaagaaatcaaactacgaaggcaacatgtaagaagaggagccagaaactgggcgacagaatcacagctctgcagcagttagtttcaccttacggcaagacagacaccgcatcggtgctccacgaagcagccgcctgcatacggcaactccaccaacaaatccagattctgacagcgccttaccctggaacaagctcctcctctgcatcgtcgcagcagcaggtcgtattttctgttcttgaaagttgcagccatgtcatgtccttctttactgcaattgcaacagttttgtggctgcaggatgccggaggaggaggaggcacggcgacggagcttcgccggcgaggcctgtgcgtggcggcgctgtcgccggccgtcgtgagcctcgcggcagagggcggtcgccgccgcacggacgtcgaggatcagaagaggatctggttcagtaatcagtag

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Protein seq

MASPPPPPPQPPSPSAATAGAAAAPVDALFLQNLMSRVQLRPPFLDTNSFLTQDLDEFLLNEFAALSAAAGASDDDDDGEDGEGEGSDGEVVSGEARRRRTLAREEAKLEKEIVRLVLAGEAEEALKPNSGQSVAVGDHHICVGFHDDSGGVYRVWEWHGHVMIFDDEDGYSAEYIYGNHFEPLAAATARAKEKEREKREKELSSGLRDLILGDTGSGANGSKENGKGGAPRVVRRNVVNAPAAPARSLISDSSGAISQMHRLQKQQLCRWIRHDDLDMLTDELERKRYRTLILMADTFLANDLRQFPSAKRKASLYTSTLANIFILMLKGSTGIQLLSLFSGYMKDDVSSAVETQLAESCRLESGVETCRLLVSSVAVKCEASNSPSTTVGFDRMIAADYDLFHHMSFSPSLQNLQSPTFFTTRSSESYLGESSIYGGGARPALAQFSYSQPIAATSAAHLVRWTAAGEPMTGDGGFRSSKRLKTATTATTQPPRHGVKCHAKPRNQTTKATCKKRSQKLGDRITALQQLVSPYGKTDTASVLHEAAACIRQLHQQIQILTAPYPGTSSSSASSQQQVVFSVLESCSHVMSFFTAIATVLWLQDAGGGGGTATELRRRGLCVAALSPAVVSLAAEGGRRRTDVEDQKRIWFSNQ

Function Transcription factor bHLH110 [UniProtKB/Swiss-Prot:Q9SFZ3]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsCMeo_03g0012910 OsCMeo_03g0012910.01 Chr03 9577717 9584785 - NAM
CDS seq

atggcttcgccgccgccgccgccgccgcagccacctagcccctccgccgccacggcgggggcggcagcggcgccggtggacgcgctgttcctccagaacctgatgagccgggtccagctccgcccgcccttcctcgacaccaactccttcctcacccaggacctcgacgagttcctcctcaacgagttcgccgcgctgtcggccgccgcgggggcctccgacgatgacgacgacggcgaggatggggaaggggagggatccgatggggaggtggtctccggggaggcgaggcggcggcggacgctggcgagggaggaggccaagctggagaaggagatcgtgcggctcgtgctcgccggggaggcggaggaggcgctcaagcccaactccggccagtccgtcgccgtcggcgaccaccacatctgcgtcggcttccacgacgattccggcggtgtgtaccgcgtctgggagtggcacggccacgtcatgatcttcgacgacgaggatggctattccgcggagtacatctacggcaaccacttcgagcccctcgccgccgccaccgccagggcgaaggagaaggagagggagaagagggagaaggagctcagctcgggcctccgcgatttgatcctgggcgacactggcagcggcgccaatggctccaaggagaatggcaagggtggggcacccagggtggtgcgcaggaacgtcgtcaatgcccctgcggcgcctgcgagatctctcatctctgattcttctggtgctatcagccaaatgcatcgacttcagaaacagcagttatgtagatggatacgccatgatgatctggacatgctaaccgatgagctagaaaggaaacgataccgaacattgatactcatggctgacacatttctggctaacgatttgcgtcagtttccctctgctaaacgtaaagcttctctttatacgtcaacacttgcaaacattttcatcttgatgttgaagggttctactggcattcagttattatcattattttctggttacatgaaagacgacgtgtcatcagctgttgagactcagcttgcagaatcttgtcgcctcgagagtggtgttgaaacctgcaggcttctggtttcttcagttgcagtgaaatgcgaagcgtctaattcaccttccacaactgtaggctttgacagaatgatcgccgcggactatgacctgttccatcacatgagcttctcgccgtcgcttcagaatcttcagtcaccaacgtttttcaccacgagaagttcagagagctacttgggagagagctcgatctatggcggaggtgccaggcctgcactcgcgcagttcagctattcccagccaattgctgctacttctgctgctcatttggtgagatggacggcggccggggagccgatgaccggcgacggcggtttcaggagctccaagaggctcaagacagcaactacggcgacgacacaacctccaaggcatggggtgaagtgccatgcaaagccaagaaatcaaactacgaaggcaacatgtaagaagaggagccagaaactgggcgacagaatcacagctctgcagcagttagtttcaccttacggcaagacagacaccgcatcggtgctccacgaagcagccgcctgcatacggcaactccaccaacaaatccagattctgacagcgccttaccctggaacaagctcctcctctgcatcgtcgcagcagcaggtcgtattttctgttcttgaaagttgcagccatgtcatgtccttctttactgcaattgcaacagttttgtggctgcaggatgccggaggaggaggaggcacggcgacggagcttcgccggcgaggcctgtgcgtggcggcgctgtcgccggccgtcgtgagcctcgcggcagagggcggtcgccgccgcacggacgtcgaggatcagaagaggatctggttcagtaatcagtag

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Protein seq

MASPPPPPPQPPSPSAATAGAAAAPVDALFLQNLMSRVQLRPPFLDTNSFLTQDLDEFLLNEFAALSAAAGASDDDDDGEDGEGEGSDGEVVSGEARRRRTLAREEAKLEKEIVRLVLAGEAEEALKPNSGQSVAVGDHHICVGFHDDSGGVYRVWEWHGHVMIFDDEDGYSAEYIYGNHFEPLAAATARAKEKEREKREKELSSGLRDLILGDTGSGANGSKENGKGGAPRVVRRNVVNAPAAPARSLISDSSGAISQMHRLQKQQLCRWIRHDDLDMLTDELERKRYRTLILMADTFLANDLRQFPSAKRKASLYTSTLANIFILMLKGSTGIQLLSLFSGYMKDDVSSAVETQLAESCRLESGVETCRLLVSSVAVKCEASNSPSTTVGFDRMIAADYDLFHHMSFSPSLQNLQSPTFFTTRSSESYLGESSIYGGGARPALAQFSYSQPIAATSAAHLVRWTAAGEPMTGDGGFRSSKRLKTATTATTQPPRHGVKCHAKPRNQTTKATCKKRSQKLGDRITALQQLVSPYGKTDTASVLHEAAACIRQLHQQIQILTAPYPGTSSSSASSQQQVVFSVLESCSHVMSFFTAIATVLWLQDAGGGGGTATELRRRGLCVAALSPAVVSLAAEGGRRRTDVEDQKRIWFSNQ

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Gene Transcript Chromosome Start End Strand Source
OsCMeo_03g0012910 OsCMeo_03g0012910.02 Chr03 9583664 9584847 - IsoSeq
CDS seq

atgacgacgacggcgaggatggggaaggggagggatccgatggggaggtggtctccggggaggcgaggcggcggcggacgctggcgagggaggaggccaagctggagaaggagatcgtgcggctcgtgctcgccggggaggcggaggaggcgctcaagcccaactccggccagtccgtcgccgtcggcgaccaccacatctgcgtcggcttccacgacgattccggcggtgtgtaccgcgtctgggagtggcacggccacg

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Protein seq

MTTTARMGKGRDPMGRWSPGRRGGGGRWRGRRPSWRRRSCGSCSPGRRRRRSSPTPASPSPSATTTSASASTTIPAVCTASGSGTAT

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 5.315444 10.057168 3.345385

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_03g0279600 RBH 5.591586 5.232018 5.582566
Nipponbare | IRGSP 1.0 | MSU LOC_Os03g17140 RBH 3.200561 3.097484 1.327241
Nipponbare | IRGSP 1.0 | RAP-db Os03g0279600 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_03g0013080 RBH 2.656188 12.087909 5.548404
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_03g0012890 RBH 0.000000 2.150812 1.276165
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) NA NA NA NA NA
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_03g0012880 RBH 0.651323 0.410734 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_03g0012740 RBH 13.344379 27.542648 8.146653
Minghui 63 | MH63RS3 | HZAU OsMH63_03G0162500 RBH 11.290549 11.5040625 10.141621
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_03g0012640 RBH 0.839561 0.337416 0.696383
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_03G0163800 RBH 7.9912255 10.7595605 16.1928365
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_03g0012800 RBH 0.000000 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_03g0012820 RBH 1.278291 15.100679 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_03g0012870 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_03g0012750 RBH 1.684240 1.453719 0.976675
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_03g0012720 RBH 1.911214 8.813530 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_03G012670 RBH 1.850255 10.474174 2.825819
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_03g0012540 RBH 5.063901 12.529313 8.773074
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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