Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0212200 | OGI:03015850 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:5853922-5857465 | ||||||||
| Gene Symbol | OsIRL7 | ||||||||||
| DNA seq | CTGCGAACAAAAAAAAAAATCTCCTCCCCGCGTCGAATTCGAAGGGGAGAGAGCGCCGCGAGCGAGCGAGTTTGGCGGCGAGATGGGCTGCTGCAGCAGCCGGAGCGCGGACTCGCCGGCCAGCCGCGTCACGCGCTGGCGCTCCACCGGGATCGTCGCCCTCCGCGACGCCAGATTGAAGGTTCCTGTTGATTGATTTTTCCTGTAAATTTAGTACCATTGGGGATTCTGTCTAGTCTGCTAGTTGGGGCGTGGAGGAATTTCGGTGCTCCCGAGTTCTTATCATCTGATGCTTAGTGATTCGGGTACACGATGACACGACAAATATGATGATGCATCCTAGGATTTCTGTTAATCAGCCGAAGGGGTCTACTGCCACATAGGCGTTAGGTTAAGCAAAGGTGTGATTTTTGGATTGCTTGCGGGTGTTTTAATCCTATGGGATTGCTAGGTGGAGGTCTGAAGGAAAGGCACAATCTTGCCGTTACAAGTATGTAATCATATGTGGTGATTGGTGAATGGTGATGGCCTGATGGGTTAACTTGGCCAATTCTTTTTCACTGTAGTTTCAGGGAATGCTGATGGTTAAAAACTTTTTGCCCATGGCACTTCCACACTTTATACTTACCCTTTATTCTCTCTCTCTAAAACAACTGCTGTACTTTCTCCTCTATTTGCATAATGGAGCTACTGCCTATCAATAATTAAATTCTTAATTAGCATGGGAAGTACTTTTTGCGACTAAATATTTAATAAACACTCACCAGATTGTAAGATTTTAGTGCTTTGTTCCATGTCCAGAAGATAGAGGTGCATTTTAATATTGGCGTTAGTTCTCATTCATTTGTTTGTCCTCATATCAGTATGTGATATGTTCTACTATCTCATCTAAAATATATATTTATCCTGCAAGTCAATGCCAATTTATATTTAATTTTCTTCGAAGAACGAAGACACAAGGTTCTTTTACTGTGAAATTGAACTTTTCTTCCAAAATTGTTAAATGTCAATGTTACCATGCAGGTAGTACCAAATGAAGTTCTACAAGTAGGGAATTCCCTGAGGATTCTGGATTTGACTAACAATAAGATAGGTATTTGGACTTTAGACCATGACCCCTGGATACTTAGAAGTTCTGCAATGCTAGTATCAATATTTTCTCTCTTTTTTTTTCTCATATATTGTCAGGAAGAAACTAGTTTGGAGTCGTTCATTGCTTCTTTCTTTCTTTTATTATGCACATCAGTATCAGATGGGAGGAAAAAAATTATGCACACCCCTTTTTTTTCACTTGGCATCACTAACAAATGCATATACTTGAAGCAAGTCAGCAACAATTCGACAAGTTATTTTTTTTACCTTGCAGGGTTTCTTTGACAGTTTGGGTAGAAAAAAAATCCAATTGAACTGCACACACTGTATTTAGATGTTTCTATATCTTGAGAAATATCAATTAAATATATATTTTATGTTGCAGCTGAGATTCCCCAGGAAGTTGGCACACTCGTGAATATGCAAAGACTTGTAAGAGTTAATGTTAATAGAAATCATGATTTGGTTCATCTTACCAAGTTACTAGAGACATGTATTTTTAAGAGTGGTTCTTCTTTGCTTGACATTTAAGTTTACTATTTCTTTTCTGTTCCTGTAGGTTTTGGCTGGTAATTTGGTTGAAAGCATCCCAGCTAACATTGGATATCTGCGGAATCTTAAAATCCTCACACTTGACAGAAATAAGATCTCTGTCTTACCTGAAGAATGTTAGTTCATAAAAACCTAATGCTATCTTTATTTATATGTTTAGATAATATTTATCATTTGTCCACGTGTATATTCTTAATCCTAGCAACAAGTTAGTAGAGATTTATTGACTTTTGCAATATTACACTTCACAATTTCCCACGTCTAAGTCCTAACTTGTTTCTTCCATTCTATCCAGTGGGTTCTCTATCAAATCTTCAACAACTCTCTATTTCTCAGAATTCTTTATCACGCCTGCCTAAGAGTGTAGGAGATTTGCGCAATGTAAGTTTCTTATTCGATTCAAGATGTTAAATTTTATATATCTTTGAAAAGCAACTTTTCTAGGCACAAAATATTTTTTTGTCTTCTCAAAACTTTTTTTTGGTATAGCATGAATGCCTTCAGAGTTACAAGCTGTTCCTTCTTTTTATTTTCCTCTTCAGAATCAAATAAACTCTTGATTCTATATTTCCTCATATGAAATTTACGCAGCTTGTTACATTCCGTAAAGTTTCTTCTTTACTAGTAAGTATTTTAAACTTGTTTTAATAATGGAGACTATGCTGTGCTCATCACTGTTTTTTCAACCTTTTTTTTTTCCTGATGCAGATGTTGCTACTCAATGTATCTGACAACAAACTAATTGCACTTCCTGAATCAATTGGAGGTTGCAGTTCCCTGGAAGAATTGCAGGCAAATGGTAAGTCCATCAGTTTTTTGCAATGGTAGCATTTATATCATTTCAATTTTCTCTGCACCCTGTTCACATGCATCCATGTTAATGCTATACTGCTGCCACACACACACACACACACACACACACAAACATGAGTGCTCTGTGCCGTCGTACTTTCCTATCTCGTATGCTATACCACCTGATATTCCATTGGGAAAGGCATGCCAGAACCATTTTTAGATACCTTTTGTCATCTAACTCAAATATGATCCAACCATTCATATGCTGTTTAAAAAAAAAATGCAAAGCACATCGTGGTTTTCGTTTTCGATGCATCATCTTAGATAACCTTCACGAAAACATTTTCAGGAAATTCAATTGAAGACGTGCCTTCATCAATCTGTAACCTTGTTTGCCTCAAATCCCTATCATTGAACGGGAATAAGATTCGTCAGGTACGAACTTATGAATATGCTTTTCCCTCGTCGATTACTTCTGTGTTTGAACCTGGAGGCTCTAGGGTCAAAGTCAGTGAATAATGACTATTCATTTAGATTTGAAATATCCTGGTTACATTGTTGCCAACTTGTAACGTACAAAATAATAAGCAAAGATTCTCCGAACTTTGACTCTCCCTGACAGCTTCCCCAAAACCTACTGAAAGACTGCAAGGCTCTTCAGAACATATCGTTGCATGACAATCCAATCTCGATGGACCAGTTTCAACAAGTTAGTGGCATGAAAGCTTAATACAGATTCTTGTAATTTGATTAATCTTGATTCAATTATAATTTGTTTTCTTTGTCTGTTGAAGATGGATGGCTTTACGGAATTTGAGGCACGCCGAAGGAAAAAATTTGACAAACAGATTGATTCAAATGTCATGATGAGTTCCACAGCACTGGATGAAGGCATTGATTTGAACTAGTTTTTCAGAAATTTTATTTAGTTTATAATTACCCCATTAGTCAAAAGACCAACTGTAAATCTAGTGTACATATTAGTTTTTCCGATACTCTGATTTGGTAAAAAGACAAAAAAATGTATAACACACACTAATGAATGAACTGTGTAATTTTTGCAAATATTCAATGAATTAGGTGTACATCACCATCTTTGATCTAC
More
|
||||||||||
| CDS seq | ATGGGCTGCTGCAGCAGCCGGAGCGCGGACTCGCCGGCCAGCCGCGTCACGCGCTGGCGCTCCACCGGGATCGTCGCCCTCCGCGACGCCAGATTGAAGGTAGTACCAAATGAAGTTCTACAAGTAGGGAATTCCCTGAGGATTCTGGATTTGACTAACAATAAGATAGCTGAGATTCCCCAGGAAGTTGGCACACTCGTGAATATGCAAAGACTTGTTTTGGCTGGTAATTTGGTTGAAAGCATCCCAGCTAACATTGGATATCTGCGGAATCTTAAAATCCTCACACTTGACAGAAATAAGATCTCTGTCTTACCTGAAGAATTGGGTTCTCTATCAAATCTTCAACAACTCTCTATTTCTCAGAATTCTTTATCACGCCTGCCTAAGAGTGTAGGAGATTTGCGCAATAATCAAATAAACTCTTGA
More
|
||||||||||
| Protein seq | MGCCSSRSADSPASRVTRWRSTGIVALRDARLKVVPNEVLQVGNSLRILDLTNNKIAEIPQEVGTLVNMQRLVLAGNLVESIPANIGYLRNLKILTLDRNKISVLPEELGSLSNLQQLSISQNSLSRLPKSVGDLRNNQINS |
||||||||||
| Function | Plant intracellular Ras-group-related LRR protein 7 [UniProtKB/Swiss-Prot:B9F655] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0212200 | OsNip_03t0212200-01 | Chr03 | 5853962 | 5857465 | + | RAP2018-11-26 | ||
| CDS seq | ATGGGCTGCTGCAGCAGCCGGAGCGCGGACTCGCCGGCCAGCCGCGTCACGCGCTGGCGCTCCACCGGGATCGTCGCCCTCCGCGACGCCAGATTGAAGGTAGTACCAAATGAAGTTCTACAAGTAGGGAATTCCCTGAGGATTCTGGATTTGACTAACAATAAGATAGCTGAGATTCCCCAGGAAGTTGGCACACTCGTGAATATGCAAAGACTTGTTTTGGCTGGTAATTTGGTTGAAAGCATCCCAGCTAACATTGGATATCTGCGGAATCTTAAAATCCTCACACTTGACAGAAATAAGATCTCTGTCTTACCTGAAGAATTGGGTTCTCTATCAAATCTTCAACAACTCTCTATTTCTCAGAATTCTTTATCACGCCTGCCTAAGAGTGTAGGAGATTTGCGCAATAATCAAATAAACTCTTGA
More
|
|||||||
| Protein seq | MGCCSSRSADSPASRVTRWRSTGIVALRDARLKVVPNEVLQVGNSLRILDLTNNKIAEIPQEVGTLVNMQRLVLAGNLVESIPANIGYLRNLKILTLDRNKISVLPEELGSLSNLQQLSISQNSLSRLPKSVGDLRNNQINS |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0212200 | OsNip_03t0212200-02 | Chr03 | 5853922 | 5857430 | + | IsoSeq | ||
| CDS seq | CTGCGAACAAAAAAAAAAATCTCCTCCCCGCGTCGAATTCGAAGGGGAGAGAGCGCCGCGAGCGAGCGAGTTTGGCGGCGAGATGGGCTGCTGCAGCAGCCGGAGCGCGGACTCGCCGGCCAGCCGCGTCACGCGCTGGCGCTCCACCGGGATCGTCGCCCTCCGCGACGCCAGATTGAAGGTAGTACC |
|||||||
| Protein seq | LRTKKKISSPRRIRRGESAASERVWRRDGLLQQPERGLAGQPRHALALHRDRRPPRRQIEGST |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr03 | 5855946 | 5856274 | + | OsNip_03t0212200-01 | OsNip_03t0212200-01,OsNip_03t0212200-02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.599357 | 1.030744 | 5.392077 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g11360 | RBH | 0.323508 | 0.533765 | 1.343986 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0212200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0008270 | RBH | 0.362500 | 9.819787 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0008240 | RBH | 0.000000 | 2.639196 | 2.004781 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0008320 | RBH | 0.923653 | 6.219962 | 6.281060 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0008310 | RBH | 0.136177 | 0.089696 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0008180 | RBH | 3.887095 | 0.0 | 4.903060 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0099100 | RBH | 2.809285 | 4.1481495 | 3.222897 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0008120 | RBH | 0.070513 | 1.416314 | 0.186661 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0099800 | SBH | 2.6284375 | 2.998485 | 3.606788 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0008140 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0008210 | RBH | 0.197801 | 4.761286 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0008190 | RBH | 3.474531 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0008200 | RBH | 0.145253 | 0.186877 | 0.567121 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0008170 | RBH | 0.135041 | 2.048256 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G008210 | RBH | 0.000000 | 2.198548 | 1.961182 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0008080 | RBH | 0.000000 | 5.336776 | 5.128040 |
