Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0819900 | OGI:02098880 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:35205011-35206349 | ||||||||
| Gene Symbol | RLCK89, OsRLCK89 | ||||||||||
| DNA seq | ATGGTTACCCTCTGGAAGCGGAAACCCAAGCCCAATCCGGAGCCGGAGGAGAAGGAGAAGGAGGAGGAGAAGGATCATCGGATGTGCAAGACCAAGAGCTCCGTCGCCACCGCCTCCATGGCCGCCTCCGCCTCCACCGCCACCACCCCAAGAAAGCATCAGCATCAGCATCAGCGGTCGCCTCGCGCCACGGCAACCCAGTACTCCACCACCTCCTCCTCCTCCGCGCCATCCACCGCCACCGCCACCTCCTCCTCCACCGCCGCCTCGCTCCAGGCTCTCCGCGATTCTCTCCCCGACCTCCCCCTCCTCCTCACCTTCCACGAGCTCGCCGCCGCCACCGCCAACTTCTCCTCCTCCCACCGCCTCGCCCCCAATTCCACCTCCTTCCGCTGCTCCCTCCGCGGGCACTCCGCGGCGGTGTTCCGGCGCCCGCTCCGGCGGGACCAGGCGCACGTGGCCGCCCGCCTCGCCGCCCTCGGCCACTGCCACCACGCCGCCATCGCGCGGCTCCTCGGCGCCGCCGCGTCGCCCGACGGCTCGCTCTTCCTCGCCTACGAGCTCCTCCCGGACGCGTCGCCGCTGTCCGCGCTCCTCCGCAACCCCAACAGCCCGTCCTTCACCCCGCTCGCGTCGTGGCAGTCCCGCCTCAAGGTCGCCGCCGACGTCGCCGACGCGCTCCACTACGTCCACCTCCAGGCCGACACCGTCCACAACCGCCTCTCCGCCTCCACCGTCCTCGTCTCCGGCGACGGCCCCACCCTCCGCGCCAAGATCGCCCACTTCGGCGCCGCCGATCTCGCCGGCGAGCTCCTGGGAGACCGCCGGGGGAGGCGGATCGAGGGCACGCGCGGGTACATGGCGCCGGAGCTCATCGCGGGCGCCGCCCCGTCGCGGCGATCCGACGTGTACGCGCTCGGCGTCGTGCTGCTGGAGCTGGTGTCCGGGCAGGAGGCGGTGAGGTACGAGCAGAACAAGGCGACGGGGGAGTACGAGAGGACGTCGGTGATCGAGAGCGCGGAGGCGGCGGCGGAGGGGGGAGGAGGGGAGGCGATGCGGCGGTGGGTGGACCGGAGGCTGAGGGACTCGTTCCCGGTGGAGGCGGCGGAGGCGATGACGGCGGTGGCGCTGCGGTGCGTGGCGAGGGACGCGGCGGCGCGGCCGGACATGTCGTGGGTCGCCGCCAAGGTGTCCAAGCTCTTCCTGGAGGCGCAGGATTGGTCCGATAAGTTCCGCATCCCCACCGACATCTCCATCTCCATCGCTCCCAGGTGAAGGTGAAACCCCACCCACCTCGCCGGAGACTCACTCACCGCCCACCGCACCTCGCCGGAGACTG
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| CDS seq | ATGGTTACCCTCTGGAAGCGGAAACCCAAGCCCAATCCGGAGCCGGAGGAGAAGGAGAAGGAGGAGGAGAAGGATCATCGGATGTGCAAGACCAAGAGCTCCGTCGCCACCGCCTCCATGGCCGCCTCCGCCTCCACCGCCACCACCCCAAGAAAGCATCAGCATCAGCATCAGCGGTCGCCTCGCGCCACGGCAACCCAGTACTCCACCACCTCCTCCTCCTCCGCGCCATCCACCGCCACCGCCACCTCCTCCTCCACCGCCGCCTCGCTCCAGGCTCTCCGCGATTCTCTCCCCGACCTCCCCCTCCTCCTCACCTTCCACGAGCTCGCCGCCGCCACCGCCAACTTCTCCTCCTCCCACCGCCTCGCCCCCAATTCCACCTCCTTCCGCTGCTCCCTCCGCGGGCACTCCGCGGCGGTGTTCCGGCGCCCGCTCCGGCGGGACCAGGCGCACGTGGCCGCCCGCCTCGCCGCCCTCGGCCACTGCCACCACGCCGCCATCGCGCGGCTCCTCGGCGCCGCCGCGTCGCCCGACGGCTCGCTCTTCCTCGCCTACGAGCTCCTCCCGGACGCGTCGCCGCTGTCCGCGCTCCTCCGCAACCCCAACAGCCCGTCCTTCACCCCGCTCGCGTCGTGGCAGTCCCGCCTCAAGGTCGCCGCCGACGTCGCCGACGCGCTCCACTACGTCCACCTCCAGGCCGACACCGTCCACAACCGCCTCTCCGCCTCCACCGTCCTCGTCTCCGGCGACGGCCCCACCCTCCGCGCCAAGATCGCCCACTTCGGCGCCGCCGATCTCGCCGGCGAGCTCCTGGGAGACCGCCGGGGGAGGCGGATCGAGGGCACGCGCGGGTACATGGCGCCGGAGCTCATCGCGGGCGCCGCCCCGTCGCGGCGATCCGACGTGTACGCGCTCGGCGTCGTGCTGCTGGAGCTGGTGTCCGGGCAGGAGGCGGTGAGGTACGAGCAGAACAAGGCGACGGGGGAGTACGAGAGGACGTCGGTGATCGAGAGCGCGGAGGCGGCGGCGGAGGGGGGAGGAGGGGAGGCGATGCGGCGGTGGGTGGACCGGAGGCTGAGGGACTCGTTCCCGGTGGAGGCGGCGGAGGCGATGACGGCGGTGGCGCTGCGGTGCGTGGCGAGGGACGCGGCGGCGCGGCCGGACATGTCGTGGGTCGCCGCCAAGGTGTCCAAGCTCTTCCTGGAGGCGCAGGATTGGTCCGATAAGTTCCGCATCCCCACCGACATCTCCATCTCCATCGCTCCCAGGTGA
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| Protein seq | MVTLWKRKPKPNPEPEEKEKEEEKDHRMCKTKSSVATASMAASASTATTPRKHQHQHQRSPRATATQYSTTSSSSAPSTATATSSSTAASLQALRDSLPDLPLLLTFHELAAATANFSSSHRLAPNSTSFRCSLRGHSAAVFRRPLRRDQAHVAARLAALGHCHHAAIARLLGAAASPDGSLFLAYELLPDASPLSALLRNPNSPSFTPLASWQSRLKVAADVADALHYVHLQADTVHNRLSASTVLVSGDGPTLRAKIAHFGAADLAGELLGDRRGRRIEGTRGYMAPELIAGAAPSRRSDVYALGVVLLELVSGQEAVRYEQNKATGEYERTSVIESAEAAAEGGGGEAMRRWVDRRLRDSFPVEAAEAMTAVALRCVARDAAARPDMSWVAAKVSKLFLEAQDWSDKFRIPTDISISIAPR |
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| Function | LysM domain receptor-like kinase 3 [UniProtKB/Swiss-Prot:F4IB81] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0819900 | OsNip_02t0819900-00 | Chr02 | 35205011 | 35206349 | + | RAP2018-11-26 | ||
| CDS seq | ATGGTTACCCTCTGGAAGCGGAAACCCAAGCCCAATCCGGAGCCGGAGGAGAAGGAGAAGGAGGAGGAGAAGGATCATCGGATGTGCAAGACCAAGAGCTCCGTCGCCACCGCCTCCATGGCCGCCTCCGCCTCCACCGCCACCACCCCAAGAAAGCATCAGCATCAGCATCAGCGGTCGCCTCGCGCCACGGCAACCCAGTACTCCACCACCTCCTCCTCCTCCGCGCCATCCACCGCCACCGCCACCTCCTCCTCCACCGCCGCCTCGCTCCAGGCTCTCCGCGATTCTCTCCCCGACCTCCCCCTCCTCCTCACCTTCCACGAGCTCGCCGCCGCCACCGCCAACTTCTCCTCCTCCCACCGCCTCGCCCCCAATTCCACCTCCTTCCGCTGCTCCCTCCGCGGGCACTCCGCGGCGGTGTTCCGGCGCCCGCTCCGGCGGGACCAGGCGCACGTGGCCGCCCGCCTCGCCGCCCTCGGCCACTGCCACCACGCCGCCATCGCGCGGCTCCTCGGCGCCGCCGCGTCGCCCGACGGCTCGCTCTTCCTCGCCTACGAGCTCCTCCCGGACGCGTCGCCGCTGTCCGCGCTCCTCCGCAACCCCAACAGCCCGTCCTTCACCCCGCTCGCGTCGTGGCAGTCCCGCCTCAAGGTCGCCGCCGACGTCGCCGACGCGCTCCACTACGTCCACCTCCAGGCCGACACCGTCCACAACCGCCTCTCCGCCTCCACCGTCCTCGTCTCCGGCGACGGCCCCACCCTCCGCGCCAAGATCGCCCACTTCGGCGCCGCCGATCTCGCCGGCGAGCTCCTGGGAGACCGCCGGGGGAGGCGGATCGAGGGCACGCGCGGGTACATGGCGCCGGAGCTCATCGCGGGCGCCGCCCCGTCGCGGCGATCCGACGTGTACGCGCTCGGCGTCGTGCTGCTGGAGCTGGTGTCCGGGCAGGAGGCGGTGAGGTACGAGCAGAACAAGGCGACGGGGGAGTACGAGAGGACGTCGGTGATCGAGAGCGCGGAGGCGGCGGCGGAGGGGGGAGGAGGGGAGGCGATGCGGCGGTGGGTGGACCGGAGGCTGAGGGACTCGTTCCCGGTGGAGGCGGCGGAGGCGATGACGGCGGTGGCGCTGCGGTGCGTGGCGAGGGACGCGGCGGCGCGGCCGGACATGTCGTGGGTCGCCGCCAAGGTGTCCAAGCTCTTCCTGGAGGCGCAGGATTGGTCCGATAAGTTCCGCATCCCCACCGACATCTCCATCTCCATCGCTCCCAGGTGA
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| Protein seq | MVTLWKRKPKPNPEPEEKEKEEEKDHRMCKTKSSVATASMAASASTATTPRKHQHQHQRSPRATATQYSTTSSSSAPSTATATSSSTAASLQALRDSLPDLPLLLTFHELAAATANFSSSHRLAPNSTSFRCSLRGHSAAVFRRPLRRDQAHVAARLAALGHCHHAAIARLLGAAASPDGSLFLAYELLPDASPLSALLRNPNSPSFTPLASWQSRLKVAADVADALHYVHLQADTVHNRLSASTVLVSGDGPTLRAKIAHFGAADLAGELLGDRRGRRIEGTRGYMAPELIAGAAPSRRSDVYALGVVLLELVSGQEAVRYEQNKATGEYERTSVIESAEAAAEGGGGEAMRRWVDRRLRDSFPVEAAEAMTAVALRCVARDAAARPDMSWVAAKVSKLFLEAQDWSDKFRIPTDISISIAPR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.264443 | 0.613590 | 0.489912 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g57440 | RBH | 0.160364 | 0.433406 | 0.132443 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0819900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0038900 | RBH | 0.0 | 3.713323 | 0.703271 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0038930 | RBH | 0.0 | 2.918581 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0038800 | RBH | 0.327231 | 1.158685 | 0.402020 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0038450 | RBH | 0.0 | 0.181902 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0038480 | RBH | 0.0 | 0.0 | 2.577613 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0574000 | RBH | 0.615741 | 3.907523 | 2.14775 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0038150 | RBH | 0.0 | 0.125802 | 0.112346 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0379600 | SBH | 0.2980835 | 0.9007235 | 0.06708 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0038450 | RBH | 0.048171 | 0.047206 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0038360 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0038500 | RBH | 0.0 | 2.859225 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0038510 | RBH | 0.0 | 0.129598 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0038170 | RBH | 0.045994 | 3.975798 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G038830 | RBH | 0.0 | 1.041485 | 0.080716 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0038730 | RBH | 0.368540 | 3.085906 | 0.174488 |
