Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLiXu_02g0038510 OGI:02098880 | 15/16 LIU XU | Os125827RS1 | Gramene(+IsoSeq) Chr02:36910095-36911381
Gene Symbol RLCK89, OsRLCK89
DNA seq

atggttaccctctggaagcggaaacccaagcccaatccggagccggaggagaaggagaaggaggaggagaaggatcatcggatgtgcaagaccaagagctccgtcgccaccgcctccatggccgcctccgcctccaccgccaccaccccaagaaagcatcagcatcagcatcagcatcagcatcagcggtcgcctcgcgccacggcgacccagtactccaccacctcctcctcctccgcgccatccaccgccaccgccacctcctcctccaccgccgcctcgctccaggctctccgcgattctctccccgacctccccctcctcctcaccttccacgagctcgccgccgccaccgccaacttctcctcctcccaccgcctcgcccccaattccacctccttccgctgctccctccgcgggcactccgcggcggtgttccggcgcccgctccggcgggaccaggcgcacgtggccgcccgcctcgccgccctcggccactgccaccacgccgccatcgcgcggctcctcggcgccgccgcgtcgcccgacggctcgctcttcctcgcctacgagctcctcccggacgcgtcgccgctgtccgcgctcctccgcaaccccaacagcccgtccttcaccccgctcgcgtcgtggcagtcccgcctcaaggtcgccgccgacgtcgccgacgcgctccactacgtccacctccaggccgacaccgtccacaaccgcctctccgcctccaccgtcctcgtctccggcgacggccccaccctccgcgccaagatcgcccacttcggcgccgccgatctcgccggcgagctcctgggagaccgccgggggaggcggatcgagggcacgcgcgggtacatggcgccggagctcattgcgggcgccgccccgtcgcggcgatccgacgtgtacgcgctcggcgtcgtgctgctggagctggtgtccgggcaggaggcggtgaggtacgagcagaacaaggcgacgggggagtacgagaggacgtcggtgatcgagagcgcggaggcggcggcggaGgggggaggaggggaggcgatgcggcggtgggtggaccggaggctgagggactcgttcccggtggaggcggcggaggcgatgacggcggtggcgctgcggtgcgtggcgagggacgcggcggcgcggccggacatgtcgtgggtcgccgccaaggtgtccaagctcttcctggaggcgcaggattggtccgataagttccgcatccccaccgacatctccatctccatcgctcccaggtga

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CDS seq

atggttaccctctggaagcggaaacccaagcccaatccggagccggaggagaaggagaaggaggaggagaaggatcatcggatgtgcaagaccaagagctccgtcgccaccgcctccatggccgcctccgcctccaccgccaccaccccaagaaagcatcagcatcagcatcagcatcagcatcagcggtcgcctcgcgccacggcgacccagtactccaccacctcctcctcctccgcgccatccaccgccaccgccacctcctcctccaccgccgcctcgctccaggctctccgcgattctctccccgacctccccctcctcctcaccttccacgagctcgccgccgccaccgccaacttctcctcctcccaccgcctcgcccccaattccacctccttccgctgctccctccgcgggcactccgcggcggtgttccggcgcccgctccggcgggaccaggcgcacgtggccgcccgcctcgccgccctcggccactgccaccacgccgccatcgcgcggctcctcggcgccgccgcgtcgcccgacggctcgctcttcctcgcctacgagctcctcccggacgcgtcgccgctgtccgcgctcctccgcaaccccaacagcccgtccttcaccccgctcgcgtcgtggcagtcccgcctcaaggtcgccgccgacgtcgccgacgcgctccactacgtccacctccaggccgacaccgtccacaaccgcctctccgcctccaccgtcctcgtctccggcgacggccccaccctccgcgccaagatcgcccacttcggcgccgccgatctcgccggcgagctcctgggagaccgccgggggaggcggatcgagggcacgcgcgggtacatggcgccggagctcattgcgggcgccgccccgtcgcggcgatccgacgtgtacgcgctcggcgtcgtgctgctggagctggtgtccgggcaggaggcggtgaggtacgagcagaacaaggcgacgggggagtacgagaggacgtcggtgatcgagagcgcggaggcggcggcggaGgggggaggaggggaggcgatgcggcggtgggtggaccggaggctgagggactcgttcccggtggaggcggcggaggcgatgacggcggtggcgctgcggtgcgtggcgagggacgcggcggcgcggccggacatgtcgtgggtcgccgccaaggtgtccaagctcttcctggaggcgcaggattggtccgataagttccgcatccccaccgacatctccatctccatcgctcccaggtga

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Protein seq

MVTLWKRKPKPNPEPEEKEKEEEKDHRMCKTKSSVATASMAASASTATTPRKHQHQHQHQHQRSPRATATQYSTTSSSSAPSTATATSSSTAASLQALRDSLPDLPLLLTFHELAAATANFSSSHRLAPNSTSFRCSLRGHSAAVFRRPLRRDQAHVAARLAALGHCHHAAIARLLGAAASPDGSLFLAYELLPDASPLSALLRNPNSPSFTPLASWQSRLKVAADVADALHYVHLQADTVHNRLSASTVLVSGDGPTLRAKIAHFGAADLAGELLGDRRGRRIEGTRGYMAPELIAGAAPSRRSDVYALGVVLLELVSGQEAVRYEQNKATGEYERTSVIESAEAAAEGGGGEAMRRWVDRRLRDSFPVEAAEAMTAVALRCVARDAAARPDMSWVAAKVSKLFLEAQDWSDKFRIPTDISISIAPR

Function LysM domain receptor-like kinase 3 [UniProtKB/Swiss-Prot:F4IB81]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLiXu_02g0038510 OsLiXu_02g0038510.01 Chr02 36910095 36911381 + NAM
CDS seq

atggttaccctctggaagcggaaacccaagcccaatccggagccggaggagaaggagaaggaggaggagaaggatcatcggatgtgcaagaccaagagctccgtcgccaccgcctccatggccgcctccgcctccaccgccaccaccccaagaaagcatcagcatcagcatcagcatcagcatcagcggtcgcctcgcgccacggcgacccagtactccaccacctcctcctcctccgcgccatccaccgccaccgccacctcctcctccaccgccgcctcgctccaggctctccgcgattctctccccgacctccccctcctcctcaccttccacgagctcgccgccgccaccgccaacttctcctcctcccaccgcctcgcccccaattccacctccttccgctgctccctccgcgggcactccgcggcggtgttccggcgcccgctccggcgggaccaggcgcacgtggccgcccgcctcgccgccctcggccactgccaccacgccgccatcgcgcggctcctcggcgccgccgcgtcgcccgacggctcgctcttcctcgcctacgagctcctcccggacgcgtcgccgctgtccgcgctcctccgcaaccccaacagcccgtccttcaccccgctcgcgtcgtggcagtcccgcctcaaggtcgccgccgacgtcgccgacgcgctccactacgtccacctccaggccgacaccgtccacaaccgcctctccgcctccaccgtcctcgtctccggcgacggccccaccctccgcgccaagatcgcccacttcggcgccgccgatctcgccggcgagctcctgggagaccgccgggggaggcggatcgagggcacgcgcgggtacatggcgccggagctcattgcgggcgccgccccgtcgcggcgatccgacgtgtacgcgctcggcgtcgtgctgctggagctggtgtccgggcaggaggcggtgaggtacgagcagaacaaggcgacgggggagtacgagaggacgtcggtgatcgagagcgcggaggcggcggcggaGgggggaggaggggaggcgatgcggcggtgggtggaccggaggctgagggactcgttcccggtggaggcggcggaggcgatgacggcggtggcgctgcggtgcgtggcgagggacgcggcggcgcggccggacatgtcgtgggtcgccgccaaggtgtccaagctcttcctggaggcgcaggattggtccgataagttccgcatccccaccgacatctccatctccatcgctcccaggtga

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Protein seq

MVTLWKRKPKPNPEPEEKEKEEEKDHRMCKTKSSVATASMAASASTATTPRKHQHQHQHQHQRSPRATATQYSTTSSSSAPSTATATSSSTAASLQALRDSLPDLPLLLTFHELAAATANFSSSHRLAPNSTSFRCSLRGHSAAVFRRPLRRDQAHVAARLAALGHCHHAAIARLLGAAASPDGSLFLAYELLPDASPLSALLRNPNSPSFTPLASWQSRLKVAADVADALHYVHLQADTVHNRLSASTVLVSGDGPTLRAKIAHFGAADLAGELLGDRRGRRIEGTRGYMAPELIAGAAPSRRSDVYALGVVLLELVSGQEAVRYEQNKATGEYERTSVIESAEAAAEGGGGEAMRRWVDRRLRDSFPVEAAEAMTAVALRCVARDAAARPDMSWVAAKVSKLFLEAQDWSDKFRIPTDISISIAPR

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.129598 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_02g0819900 RBH 0.264443 0.613590 0.489912
Nipponbare | IRGSP 1.0 | MSU LOC_Os02g57440 RBH 0.160364 0.433406 0.132443
Nipponbare | IRGSP 1.0 | RAP-db Os02g0819900 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_02g0038900 RBH 0.0 3.713323 0.703271
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_02g0038930 RBH 0.0 2.918581 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_02g0038800 RBH 0.327231 1.158685 0.402020
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_02g0038450 RBH 0.0 0.181902 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_02g0038480 RBH 0.0 0.0 2.577613
Minghui 63 | MH63RS3 | HZAU OsMH63_02G0574000 RBH 0.615741 3.907523 2.14775
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_02g0038150 RBH 0.0 0.125802 0.112346
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_02G0379600 SBH 0.2980835 0.9007235 0.06708
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_02g0038450 RBH 0.048171 0.047206 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_02g0038360 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_02g0038500 RBH 0.0 2.859225 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_03g0003790 SBH 0.575119 0.230788 0.000000
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_02g0038170 RBH 0.045994 3.975798 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_02G038830 RBH 0.0 1.041485 0.080716
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_02g0038730 RBH 0.368540 3.085906 0.174488
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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