Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0801600 | OGI:02095900 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:34167662-34168334 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATCTCAAATCCACACCAGTTACCCTCAATAGAAACGGTGCTAATGGCCCAGAACAAGACCATGGCTCTGCTCCTTGCCACCCTTGTGGCGGTGGTTGCGGTAGTACGAGCCACCGAAGAGAAGGATATAGAAGAAGCTGTGTGCTCAGAGCATTGCAACGACGAGGAAAAAGAAGGCACCATCGACCACAAGCACTGTGTAGACATCTACATCCTCACGAACAGGGAACTTTTTGGGGCCTTGGAGAGAGGAATGAAGCCCTCGATGGAGCAATTCAGCGCTTTGTGCAATGAGGGGTGTAGCAAAGAATTTAAGGAGGATCCTGCCACCAACAAGAAGTGCGTAGACAGTTGCATCGTCGATGCTAAGGAACTCAATGGACACTTAGCGAAAGGTGGCGCTTCTAGTGTTCCCGCACGTGCATGATTGTGTCGAGCTGCACATCTGTTCCTTCATCCATGATCGAGGGACGATACCCATTAATGGTTCCCACCCAGCGGTCGGCCTTGTATTACATTGTCCTGTTGTTCCTTTTGCCTCTTCAATTGTTTCATTATTTGGTGTTCATAACTTCTATGTGATCGATCTGGTCTGTTGTTCTACCCAATATTGTTACTAAAAGCATTTGTTATCTTTAATTGATTAAAATAGTTCCAGTTGTGCTTTGTCTTTT
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| CDS seq | ATGGCCCAGAACAAGACCATGGCTCTGCTCCTTGCCACCCTTGTGGCGGTGGTTGCGGTAGTACGAGCCACCGAAGAGAAGGATATAGAAGAAGCTGTGTGCTCAGAGCATTGCAACGACGAGGAAAAAGAAGGCACCATCGACCACAAGCACTGTGTAGACATCTACATCCTCACGAACAGGGAACTTTTTGGGGCCTTGGAGAGAGGAATGAAGCCCTCGATGGAGCAATTCAGCGCTTTGTGCAATGAGGGGTGTAGCAAAGAATTTAAGGAGGATCCTGCCACCAACAAGAAGTGCGTAGACAGTTGCATCGTCGATGCTAAGGAACTCAATGGACACTTAGCGAAAGGTGGCGCTTCTAGTGTTCCCGCACGTGCATGA |
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| Protein seq | MAQNKTMALLLATLVAVVAVVRATEEKDIEEAVCSEHCNDEEKEGTIDHKHCVDIYILTNRELFGALERGMKPSMEQFSALCNEGCSKEFKEDPATNKKCVDSCIVDAKELNGHLAKGGASSVPARA |
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| Function | Uncharacterized protein Os02g0798501 [UniProtKB/Swiss-Prot:B7F6L8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0801600 | OsNip_02t0801600-00 | Chr02 | 34167662 | 34168334 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCCCAGAACAAGACCATGGCTCTGCTCCTTGCCACCCTTGTGGCGGTGGTTGCGGTAGTACGAGCCACCGAAGAGAAGGATATAGAAGAAGCTGTGTGCTCAGAGCATTGCAACGACGAGGAAAAAGAAGGCACCATCGACCACAAGCACTGTGTAGACATCTACATCCTCACGAACAGGGAACTTTTTGGGGCCTTGGAGAGAGGAATGAAGCCCTCGATGGAGCAATTCAGCGCTTTGTGCAATGAGGGGTGTAGCAAAGAATTTAAGGAGGATCCTGCCACCAACAAGAAGTGCGTAGACAGTTGCATCGTCGATGCTAAGGAACTCAATGGACACTTAGCGAAAGGTGGCGCTTCTAGTGTTCCCGCACGTGCATGA
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| Protein seq | MAQNKTMALLLATLVAVVAVVRATEEKDIEEAVCSEHCNDEEKEGTIDHKHCVDIYILTNRELFGALERGMKPSMEQFSALCNEGCSKEFKEDPATNKKCVDSCIVDAKELNGHLAKGGASSVPARA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.217661 | 0.0 | 22.116682 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0800400 | SBH | 0.036277 | 0.0 | 15.975896 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g55810 | RBH | 0.142093 | 0.0 | 5.565886 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0801600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0037380 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0037400 | SBH | 0.0 | 0.0 | 29.493479 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0037220 | SBH | 0.000000 | 0.000000 | 74.601822 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0036820 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0037110 | SBH | 0.0 | 0.0 | 86.611778 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0558500 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0036800 | SBH | 0.0 | 0.0 | 14.838871 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0599100 | SBH | 0.046833 | 0.0131645 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0037040 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0036990 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0037100 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0037110 | SBH | 0.0 | 0.0 | 5.106956 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0036700 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G037280 | SBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0037220 | SBH | 0.0 | 0.0 | 104.812622 |
