Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0037040 | OGI:02095900 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:36104466-36107720 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcccagaacaagaccatggctctgctccttgccacccttgtggcggtggttgcggtagtacgagccaccgaagagaaggatatagaagaagctgtgtgctcagagcattgtaacgatgaggaaaaagaaggcaccatcgaccacaagcactgtgtagacatctgcatcctcacgaacagggaactttttggggccgtggagagaggaataaagccctcgatggagcaattcagcgctttgtgcaatgaggggtgtagcaaagaatttaaggaggatcctgccaccaacaagaagtgcgtagacagttgcatcgtcgatgctaaggaactcaatggacgcttagcgaaaggtggcgcttctagtgttcccgcacgtgcatgattgtgtcgagctgcacatctgttccttcatccatgatcgagggacgatacccattaatggttcccacccagcggtcggccttgtattacattgtcctgttgttccttttgcctcttcaattgtttcattatttggtgttcataacttctatgtgatcgatctggtctgttgttctacccaatattgttactaaaatcatttgttatctttaattgattaaaatagttctagttgtgctttgtcttttaacattcattaatatacggtctcatattccactttgagtacgtgcaatgttagtacatagatatagttcatgcttccttccgcgcgtccggtgcgtgccctgtgatcatgctctcttggaaaacgcaacaactagggcaccacgatacacgtgcatctactcctagtcctactgctatgagagagccaaagagaacacaaaaggcacgcggccacgctaaactcttcaaaacaaaactaattctccgctttcaaggcacgctgcttttgaatagctacaaaccggtaccctcagtgatgatattatacatgtttctctagcgtaaaaaatatgtttcagttattgccttgacatgttgcaccaatgtgttgcatcgatgagtttataggtatgttgtttcacgaatacaatatcgaaggttccgatttgaaaagtatagcttttaagtgcaagactgaaacaatctttttcctcgttagagaacaacaccatattaaggcaatataatacatacatttgatttcatcattttttttaatttttgatattgggcctgatgaaaataatggatcttgttttaacaaattaagctaaacattttgtttcgcaagcctatacaaaagtttcagaaatgcgagttttagtacataatacaccattgtcgtgtgatgaccggtcaggccatgggttttttttttggactggaagttatttaattaatcatttatagaatttatattaatgtgcaagtcatttgacatgtaaagtaaaggagggaactaaactttccttgaataaaccatgtttggagtattttcatgtgattcgccatccctaaaatattgtctgaaattttctcggaactcaacctttaattttaacgatgccaatggttacgccttttctagaactctttggccatatagttacacggaaaggataggtgcgtctagctagacatatatgctaacatctgatggcatgtcgagacaggtgcacgcgtacagtcattccatggatcgcatataatagctactaaatcacattagttgttgcaaagccatgacaataaaagatagagaggatgttctcccaatgacctgtagggtgaaacggagcttgagacaacaagttcttccacatatataatttttttttggggtctttcaattttcgttcgttataaatatgtaacgggaattttacttttggtatatcattactatcccccaatgttctgggactatcttcatttagaaaaatatatcgcagcccatttgagatattctacaggaccgggacgacgatctaaatctttttcttttgtcatctgagaacatttttgaaaaaaaaattaaaggcctacattagataatcacatgtctttggattagctagaacaagataatgctaacctacacattatggaaaccgaatgttcatggtactgtttagcacatcaagcaggtccaagttgttgtttgccagtttgtgcagcctatcaagtaaaatatcatcgcaatagaataggtcgtgttatacgtgtatggcaaattaggtaacagattaatggcgctaagcttaattcatgacatgaatgccatttaggctggaagtgtaacaagaaagcatattcttacaatccaccatccaaataaaaagtgaccagtagatacaacggaggacatagatatttatttgaattatttaaacgcatgcacgcatgccatgagaacctcatcactctctggtcataaggaacgcatctctagcaaccaaagatgacaaacatgcatataattagcctcattggtggtccatgaagctctcccagccccatatatatatatacatatatagctcctttgctatcatgtacgtagtatataacatgagcatcagggtaaggaaagtcatctcaaatccacaccagttaccctcaatagaaacggtgctaatggcccagaacaagaccatggctctgctccttgccacccttgtggcggtggttgcggtagtacgagccaccgaagagaaggatatagaagaagctgtgtgctcagagcattgtaacgatgaggaaaaagaaggcaccatcgaccacaagcactgtgtagacatctgcatcctcacgaacagggaacttttgggggccttggagagaggaataaagccctcgatggagcaattcagcgctttgtgcaatgaggggtgtagcaaagaatttaaggaggatcctgccaccaacaagaagtgcgtagacagttgcatcgtcgatgctaaggaactcaatggacgcttagcgaaaggtggcgcttctagtgttcccgcacgtgcatgattgtgtcgagctgcacatctgttccttcatccatgatcgagggacgatacccattaatggttcccacccagcggtcggccttgtattacattgtcctgttgttccttttgcctcttcaattgtttcattatttggtgttcataacttctatgtgatcgatctggtctgttgttctacccaatattgttactaaaatcatttgttatctttaattgattaaaatagttccagttgtgctttgtcttttaacattcattaatatacggtctcatattccactttg
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| CDS seq | atggcccagaacaagaccatggctctgctccttgccacccttgtggcggtggttgcggtagtacgagccaccgaagagaaggatatagaagaagctgtgtgctcagagcattgtaacgatgaggaaaaagaaggcaccatcgaccacaagcactgtgtagacatctgcatcctcacgaacagggaactttttggggccgtggagagaggaataaagccctcgatggagcaattcagcgctttgtgcaatgaggggtgtagcaaagaatttaaggaggatcctgccaccaacaagaagtgcgtagacagttgcatcgtcgatgctaaggaactcaatggacgcttagcgaaaggtggcgcttctagtaacaagaccatggctctgctccttgccacccttgtggcggtggttgcggtagtacgagccaccgaagagaaggatatagaagaagctgtgtgctcagagcattgtaacgatgaggaaaaagaaggcaccatcgaccacaagcactgtgtagacatctgcatcctcacgaacagggaacttttgggggccttggagagaggaataaagccctcgatggagcaattcagcgctttgtgcaatgaggggtgtagcaaagaatttaaggaggatcctgccaccaacaagaagtgcgtagacagttgcatcgtcgatgctaaggaactcaatggacgcttagcgaaaggtggcgcttctagtgttcccgcacgtgcatga
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| Protein seq | MAQNKTMALLLATLVAVVAVVRATEEKDIEEAVCSEHCNDEEKEGTIDHKHCVDICILTNRELFGAVERGIKPSMEQFSALCNEGCSKEFKEDPATNKKCVDSCIVDAKELNGRLAKGGASSNKTMALLLATLVAVVAVVRATEEKDIEEAVCSEHCNDEEKEGTIDHKHCVDICILTNRELLGALERGIKPSMEQFSALCNEGCSKEFKEDPATNKKCVDSCIVDAKELNGRLAKGGASSVPARA |
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| Function | Uncharacterized protein Os02g0798501 [UniProtKB/Swiss-Prot:B7F6L8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0037040 | OsLima_02g0037040.01 | Chr02 | 36104466 | 36107720 | + | NAM | ||
| CDS seq | atggcccagaacaagaccatggctctgctccttgccacccttgtggcggtggttgcggtagtacgagccaccgaagagaaggatatagaagaagctgtgtgctcagagcattgtaacgatgaggaaaaagaaggcaccatcgaccacaagcactgtgtagacatctgcatcctcacgaacagggaactttttggggccgtggagagaggaataaagccctcgatggagcaattcagcgctttgtgcaatgaggggtgtagcaaagaatttaaggaggatcctgccaccaacaagaagtgcgtagacagttgcatcgtcgatgctaaggaactcaatggacgcttagcgaaaggtggcgcttctagtaacaagaccatggctctgctccttgccacccttgtggcggtggttgcggtagtacgagccaccgaagagaaggatatagaagaagctgtgtgctcagagcattgtaacgatgaggaaaaagaaggcaccatcgaccacaagcactgtgtagacatctgcatcctcacgaacagggaacttttgggggccttggagagaggaataaagccctcgatggagcaattcagcgctttgtgcaatgaggggtgtagcaaagaatttaaggaggatcctgccaccaacaagaagtgcgtagacagttgcatcgtcgatgctaaggaactcaatggacgcttagcgaaaggtggcgcttctagtgttcccgcacgtgcatga
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| Protein seq | MAQNKTMALLLATLVAVVAVVRATEEKDIEEAVCSEHCNDEEKEGTIDHKHCVDICILTNRELFGAVERGIKPSMEQFSALCNEGCSKEFKEDPATNKKCVDSCIVDAKELNGRLAKGGASSNKTMALLLATLVAVVAVVRATEEKDIEEAVCSEHCNDEEKEGTIDHKHCVDICILTNRELLGALERGIKPSMEQFSALCNEGCSKEFKEDPATNKKCVDSCIVDAKELNGRLAKGGASSVPARA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0801000 | RBH | 0.0 | 0.0 | 13.548160 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g55658 | RBH | 0.035307 | 0.0 | 5.786339 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0800300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0037370 | RBH | 0.0 | 0.0 | 0.308441 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0037480 | RBH | 0.0 | 0.0 | 54.138470 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0037190 | RBH | 0.000000 | 0.0 | 37.620041 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0036940 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0037070 | RBH | 0.0 | 0.0 | 81.364395 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0558500 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0036800 | SBH | 0.0 | 0.0 | 14.838871 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0599100 | RBH | 0.046833 | 0.0131645 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0037050 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0036870 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0037100 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0037100 | RBH | 0.0 | 0.0 | 4.890491 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0036700 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G037370 | SBH | 0.0 | 0.0 | 3.562411 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0037130 | RBH | 0.000000 | 0.000000 | 49.325008 |
