Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0786500 | OGI:02094330 | 8/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:33408020-33408939 | ||||||||
| Gene Symbol | PR1-21, OsPR1#021, OsPR1-21 | ||||||||||
| DNA seq | ACTGGTAGTGGCAGTAGTGCAAATCCACAGCTCAGCATTTTGCCTCCCATGGCGTCCTCCACCGCCATTGCCCTTGCTCTCCTCGGCATTGTGCTTCTTCTTCCCGGCAATGCCTTCGTCGTGGTCGCCTACCCACGCGGCGGCGGCGGCGGGGACTACAGGATGCAGTTCTTGGGGCAGCAGAACGCGGCGAGGGCGGCGATGGGGTTGCCGGCGCTGGTGTGGGACGAGCGGGTGGCCGGGTACGCGCGGTGGTACGCGGAGTCGCGGCGCGGCGACTGCGCGCTGGTGCACTCGTCGGGGCCGTACGGGGAGAACCTGTTCTGGGGGAGCGGCACGGGTTGGTCGCCGGCGCAGGCCGTGGGCGCGTGGCTCGCCGAGCAGCCGCGGTACAACTACTGGAGCAACAGCTGCTACGGCGGCATGTGCGGGCACTACACCCAGATCATGTGGCGCGCCACGCGCCGCGTCGGCTGCGCCATGGTCGCCTGCTACAACGGCAGGGGCACCTTCATCACCTGCAACTACGACCCGCCCGGCAACTACGTCGGCATGCGCCCCTACTGACTACCCGCCCACCCACCCTCCGCCGCCGCTGCCGTCGCCGGTGATGGTGACGGTGACCGATTCTTTCCTTGGTCCGCTCTGCCGGCCGGCCGGGAGCACCGCGGCACACGGCAGGGCGACGCAGCGCAGCAACCAACCAATCTTGCTGTCTCATTCATTGCCATATGATGATGATGATGATGTTACAAGAGTACTACAACTGTACAAAATAATTCTTTCTTTCTACTGCACGCTGCAACATCTTTTTTTTTTTGCTTTTTTACCTTTTTTCCTACCAAAATATATATTATGATGTTATTGGTAGGATCGGGGAAACTACAATGAAATATGATCAGCTAATTGATTGGTCTGTT
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| CDS seq | ATGGCGTCCTCCACCGCCATTGCCCTTGCTCTCCTCGGCATTGTGCTTCTTCTTCCCGGCAATGCCTTCGTCGTGGTCGCCTACCCACGCGGCGGCGGCGGCGGGGACTACAGGATGCAGTTCTTGGGGCAGCAGAACGCGGCGAGGGCGGCGATGGGGTTGCCGGCGCTGGTGTGGGACGAGCGGGTGGCCGGGTACGCGCGGTGGTACGCGGAGTCGCGGCGCGGCGACTGCGCGCTGGTGCACTCGTCGGGGCCGTACGGGGAGAACCTGTTCTGGGGGAGCGGCACGGGTTGGTCGCCGGCGCAGGCCGTGGGCGCGTGGCTCGCCGAGCAGCCGCGGTACAACTACTGGAGCAACAGCTGCTACGGCGGCATGTGCGGGCACTACACCCAGATCATGTGGCGCGCCACGCGCCGCGTCGGCTGCGCCATGGTCGCCTGCTACAACGGCAGGGGCACCTTCATCACCTGCAACTACGACCCGCCCGGCAACTACGTCGGCATGCGCCCCTACTGA
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| Protein seq | MASSTAIALALLGIVLLLPGNAFVVVAYPRGGGGGDYRMQFLGQQNAARAAMGLPALVWDERVAGYARWYAESRRGDCALVHSSGPYGENLFWGSGTGWSPAQAVGAWLAEQPRYNYWSNSCYGGMCGHYTQIMWRATRRVGCAMVACYNGRGTFITCNYDPPGNYVGMRPY |
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| Function | Pathogenesis-related protein PR-1 [UniProtKB/Swiss-Prot:Q40374] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0786500 | OsNip_02t0786500-01 | Chr02 | 33408020 | 33408939 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCGTCCTCCACCGCCATTGCCCTTGCTCTCCTCGGCATTGTGCTTCTTCTTCCCGGCAATGCCTTCGTCGTGGTCGCCTACCCACGCGGCGGCGGCGGCGGGGACTACAGGATGCAGTTCTTGGGGCAGCAGAACGCGGCGAGGGCGGCGATGGGGTTGCCGGCGCTGGTGTGGGACGAGCGGGTGGCCGGGTACGCGCGGTGGTACGCGGAGTCGCGGCGCGGCGACTGCGCGCTGGTGCACTCGTCGGGGCCGTACGGGGAGAACCTGTTCTGGGGGAGCGGCACGGGTTGGTCGCCGGCGCAGGCCGTGGGCGCGTGGCTCGCCGAGCAGCCGCGGTACAACTACTGGAGCAACAGCTGCTACGGCGGCATGTGCGGGCACTACACCCAGATCATGTGGCGCGCCACGCGCCGCGTCGGCTGCGCCATGGTCGCCTGCTACAACGGCAGGGGCACCTTCATCACCTGCAACTACGACCCGCCCGGCAACTACGTCGGCATGCGCCCCTACTGA
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| Protein seq | MASSTAIALALLGIVLLLPGNAFVVVAYPRGGGGGDYRMQFLGQQNAARAAMGLPALVWDERVAGYARWYAESRRGDCALVHSSGPYGENLFWGSGTGWSPAQAVGAWLAEQPRYNYWSNSCYGGMCGHYTQIMWRATRRVGCAMVACYNGRGTFITCNYDPPGNYVGMRPY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g54540 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0786500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0036290 | SBH | 0.0 | 35.544170 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0036400 | RBH | 0.000000 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0036230 | SBH | 0.0 | 10.896524 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0016680 | SBH | 0.041160 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0036020 | RBH | 0.0 | 5.797383 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0546500 | RBH | 1.943875 | 0.6125315 | 0.3020005 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0016360 | SBH | 0.073459 | 0.0 | 0.037450 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0577200 | RBH | 2.410577 | 0 | 12.846218 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0036100 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0035920 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0036160 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0036110 | SBH | 0.0 | 0.259330 | 0.128697 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0035720 | SBH | 0.0 | 14.767255 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G036360 | SBH | 0.0 | 8.546945 | 1.054079 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0016680 | SBH | 0.000000 | 0.0 | 0.169651 |
