Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0785000 | OGI:02094100 | 11/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:33324540-33325833 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CCTTTTGAGTTATCATCTGTGTATTTGAATCAAGTGTTCATTACAAACTGATGGGGATTAAAGGAGGAAAAAGGAAAATAATTTCTGCAAAATGTCGAATAATACCCAAAAAAATATATATAGTAGAAACCATTTCATTCCCCAAAATTAACCAACAATGTATAACGCATGTCCAATTCCAATCGATGGATCCTCTGTTTCTAGTTTATCTTGTAGAACTTTGAGGGCTCGAGGCCCTTGGTGAAGTTGAAGTACTTGAGCGTCTCGGCCCAGCGCGGGTTGTCCTTGAGGCGGTGGACGGCGATGGTGTCCGGGATAAACTCGTGCGAGCACTTGTCCACCGGCGCCGGCAGCGGGTAGTCGTACATGGCCGGCTTGGCGTTGAACCTGTTCTTCCCTCTCCCCCCGAGCCGCAGCCACTGCCCCGTCATCCTGTCCTCCGGCCCCACGGTGCGGTTGCGCGGCACGTCGGAGGTCGCCACCCACTCGACGACGTCCCACGACAGCGCGTACGCCATGCCGGACATGTACTCCCTGAACGGGTCCATGCTGCCGCACGGGATGGTGGCGCCGTAGTACGCGTCCTCCCGCGGCATCGCGCCCAGGGAGGCCAGCAGCCGCGGCAGCCGGAGGAAGATGTCGTCGTCGGCCTTCATCACGTAGTCGTAGGGGTCGTCGGCGTACAGCCGCGCCGCCGCGGAGAAGAAGGCGTACGTCTTGCCGCCGTTGAGGTTCTCCTCGCACTCGTCGAGGACGATGATGTCGCCGTGGCGGAGGATCTCGAGCGGGACGAGGACGCGCTGGTCGTCCTTGTAGAGGCGGCAGAAGACGAAGCGGACGTCGACGTGCGCGGTCAGGTCGCCGGCGGCGAGCTGGAGGCCGTACACCATGCGAAGGAGGTGCCGGCGCTCGTAGTTGTCGGCGCGGGTGAGCACGCCGATGAGGAGGCGGAAGTCGGGCTTCCGCGACGCCGGTGGCTCCCCGGCGAGGCGGCGCGGCGCCGCCGTGTACGCCCCCGCCGCCGTCGTCGGCCCGCACGAGCTCATCATGAGCGCCTGCAGCTCGAACTCCTTGGGGTAGACGAAGAGGTAGATGAACCCGAGGAGCAGCAGCGGCAGCAGCACCAGCGCCTTGCTTGACGCCGACAGCTTGGGGAAGCCATGCTTAGAGCTCTTCGCCGGCGGCATGGCAGGCAAGAGCTCGAGCTCGACACAGTCGTCGTCGTCTTCGTCGTCGTTGCTGCTGCGATTCAAGAAGCTCTCCTTGTGATCCAGAGATTGCTGTGAATTGAATT
More
|
||||||||||
| CDS seq | ATGCCGCCGGCGAAGAGCTCTAAGCATGGCTTCCCCAAGCTGTCGGCGTCAAGCAAGGCGCTGGTGCTGCTGCCGCTGCTGCTCCTCGGGTTCATCTACCTCTTCGTCTACCCCAAGGAGTTCGAGCTGCAGGCGCTCATGATGAGCTCGTGCGGGCCGACGACGGCGGCGGGGGCGTACACGGCGGCGCCGCGCCGCCTCGCCGGGGAGCCACCGGCGTCGCGGAAGCCCGACTTCCGCCTCCTCATCGGCGTGCTCACCCGCGCCGACAACTACGAGCGCCGGCACCTCCTTCGCATGGTGTACGGCCTCCAGCTCGCCGCCGGCGACCTGACCGCGCACGTCGACGTCCGCTTCGTCTTCTGCCGCCTCTACAAGGACGACCAGCGCGTCCTCGTCCCGCTCGAGATCCTCCGCCACGGCGACATCATCGTCCTCGACGAGTGCGAGGAGAACCTCAACGGCGGCAAGACGTACGCCTTCTTCTCCGCGGCGGCGCGGCTGTACGCCGACGACCCCTACGACTACGTGATGAAGGCCGACGACGACATCTTCCTCCGGCTGCCGCGGCTGCTGGCCTCCCTGGGCGCGATGCCGCGGGAGGACGCGTACTACGGCGCCACCATCCCGTGCGGCAGCATGGACCCGTTCAGGGAGTACATGTCCGGCATGGCGTACGCGCTGTCGTGGGACGTCGTCGAGTGGGTGGCGACCTCCGACGTGCCGCGCAACCGCACCGTGGGGCCGGAGGACAGGATGACGGGGCAGTGGCTGCGGCTCGGGGGGAGAGGGAAGAACAGGTTCAACGCCAAGCCGGCCATGTACGACTACCCGCTGCCGGCGCCGGTGGACAAGTGCTCGCACGAGTTTATCCCGGACACCATCGCCGTCCACCGCCTCAAGGACAACCCGCGCTGGGCCGAGACGCTCAAGTACTTCAACTTCACCAAGGGCCTCGAGCCCTCAAAGTTCTACAAGATAAACTAG
More
|
||||||||||
| Protein seq | MPPAKSSKHGFPKLSASSKALVLLPLLLLGFIYLFVYPKEFELQALMMSSCGPTTAAGAYTAAPRRLAGEPPASRKPDFRLLIGVLTRADNYERRHLLRMVYGLQLAAGDLTAHVDVRFVFCRLYKDDQRVLVPLEILRHGDIIVLDECEENLNGGKTYAFFSAAARLYADDPYDYVMKADDDIFLRLPRLLASLGAMPREDAYYGATIPCGSMDPFREYMSGMAYALSWDVVEWVATSDVPRNRTVGPEDRMTGQWLRLGGRGKNRFNAKPAMYDYPLPAPVDKCSHEFIPDTIAVHRLKDNPRWAETLKYFNFTKGLEPSKFYKIN |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0785000 | OsNip_02t0785000-01 | Chr02 | 33324540 | 33325833 | - | RAP2018-11-26 | ||
| CDS seq | ATGCCGCCGGCGAAGAGCTCTAAGCATGGCTTCCCCAAGCTGTCGGCGTCAAGCAAGGCGCTGGTGCTGCTGCCGCTGCTGCTCCTCGGGTTCATCTACCTCTTCGTCTACCCCAAGGAGTTCGAGCTGCAGGCGCTCATGATGAGCTCGTGCGGGCCGACGACGGCGGCGGGGGCGTACACGGCGGCGCCGCGCCGCCTCGCCGGGGAGCCACCGGCGTCGCGGAAGCCCGACTTCCGCCTCCTCATCGGCGTGCTCACCCGCGCCGACAACTACGAGCGCCGGCACCTCCTTCGCATGGTGTACGGCCTCCAGCTCGCCGCCGGCGACCTGACCGCGCACGTCGACGTCCGCTTCGTCTTCTGCCGCCTCTACAAGGACGACCAGCGCGTCCTCGTCCCGCTCGAGATCCTCCGCCACGGCGACATCATCGTCCTCGACGAGTGCGAGGAGAACCTCAACGGCGGCAAGACGTACGCCTTCTTCTCCGCGGCGGCGCGGCTGTACGCCGACGACCCCTACGACTACGTGATGAAGGCCGACGACGACATCTTCCTCCGGCTGCCGCGGCTGCTGGCCTCCCTGGGCGCGATGCCGCGGGAGGACGCGTACTACGGCGCCACCATCCCGTGCGGCAGCATGGACCCGTTCAGGGAGTACATGTCCGGCATGGCGTACGCGCTGTCGTGGGACGTCGTCGAGTGGGTGGCGACCTCCGACGTGCCGCGCAACCGCACCGTGGGGCCGGAGGACAGGATGACGGGGCAGTGGCTGCGGCTCGGGGGGAGAGGGAAGAACAGGTTCAACGCCAAGCCGGCCATGTACGACTACCCGCTGCCGGCGCCGGTGGACAAGTGCTCGCACGAGTTTATCCCGGACACCATCGCCGTCCACCGCCTCAAGGACAACCCGCGCTGGGCCGAGACGCTCAAGTACTTCAACTTCACCAAGGGCCTCGAGCCCTCAAAGTTCTACAAGATAAACTAG
More
|
|||||||
| Protein seq | MPPAKSSKHGFPKLSASSKALVLLPLLLLGFIYLFVYPKEFELQALMMSSCGPTTAAGAYTAAPRRLAGEPPASRKPDFRLLIGVLTRADNYERRHLLRMVYGLQLAAGDLTAHVDVRFVFCRLYKDDQRVLVPLEILRHGDIIVLDECEENLNGGKTYAFFSAAARLYADDPYDYVMKADDDIFLRLPRLLASLGAMPREDAYYGATIPCGSMDPFREYMSGMAYALSWDVVEWVATSDVPRNRTVGPEDRMTGQWLRLGGRGKNRFNAKPAMYDYPLPAPVDKCSHEFIPDTIAVHRLKDNPRWAETLKYFNFTKGLEPSKFYKIN
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0192400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g54370 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0785000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0036230 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0036320 | RBH | 0.000000 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0036170 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0035760 | RBH | 0.0 | 0.044687 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0035950 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0545500 | RBH | 0.0294715 | 0.0876645 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0035770 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0575800 | RBH | 0.024581 | 0.01456 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0036040 | RBH | 0.0 | 0.098627 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0035850 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0036100 | SBH | 0.0 | 1.381064 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0036050 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0035650 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G036300 | RBH | 0.0 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0036050 | SBH | 0.0 | 0.864619 | 0.0 |
