Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0624300 | OGI:02070600 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:24878777-24879933 | ||||||||
| Gene Symbol | MYB30, OsMYB30, OsMYB5P, MYB5P, OsMYB13a, MYB13a | ||||||||||
| DNA seq | AAAGATAATATTGCCTTCTTTCGTTTCCCATCAATCTCTCCGCTTTGTAAAGATTTACACAGCTCCAAAGATTCAAAGAATAGTGGTGGTAAGAAAAATGAACAAGAGATCGACCCAAGAGGCCAATTCTCTGCCTAAATTAAATCTGGGGCAAATTCTGCATGCCACCGGCCTGGATGAACAGCTTGAGCCAGAAGTCGTCCATGTCGTCGTCGTTGCTCGACGACGGCGAGGCACCGCCCGCGCCGAGAGGATCGCCGCCGCTCATCTCCATCCCGGAGTCGGTGCTGTCCACCGTCATTGCCAGCGTCTCCGACCAGAAGCTGTCGTCGATCTGGAACTCCTCCTCCGAGGTGAAACTGTCCGTGGTGTTGTGATCCGCGGAGGAGGCCATCGAGTACGAGTACTCCTCGGTGGTGGCGGCCGACGTCGTCGTGGTCGAGAGCGACTGCTCCGGCGACACCGGCACGGTGGTCGGAACGTCGATCGCCACCGCCACCGCCGCAGCCTTCTTGGTCGCCTTTCGCTTGGGCGCGGCGGCTTCCCGGCCGGACGACGGCTTCGGCTCCAGCCGCTTCTTGAGGTGAGTGTGCCACACATTCTTGATCTCGTTGTCCGTCCTCCCCGGCAGCCTCGCTGCAATCGCGGACCATCTGAATCATTCGCCACAAATCGAGTTAATTAACCAATAAACAAATCCGAGACAAAATCTTTCGCGTATCCAAGGCAAAAGATTAGTAAACTAGTATTGGACAGTGGCTTGAAAAGTACCGGTTGCCGAGAAGGTCGTGGAGGTGGATGATGGCGTCCTCCTCCTCGCGGGTGAAGTTGCCGCGCTTGATGTCGGGGCGGAGGTAGTTGATCCACCGGAGGCGGCAGCTCTTGCCGCAGCGGAGAAGGCCGGCCTGCCTCGGCAGCGCGCGCCAGTTGCTGTGCCCGTGCCGCTCGATGTGCGCCACCAGGATCCTGTCCTCCTCCGCCGTCCACGGCCCCCTCTTCAGCCCCATCTTCTCGCAGCACGGCGCCCTCCCCATTGCCGACCTTTCCTCCTCTCGTTCGAGCTCTCGCGCCCTGTGCGTTTGTTTGTGTTTGTGTGTGATGGATTGATTGCTCGGTGTGTGTGTGTGTTGCTGATGCTGCGTCGTCTGTGTGATGCT
More
|
||||||||||
| CDS seq | ATGGGGAGGGCGCCGTGCTGCGAGAAGATGGGGCTGAAGAGGGGGCCGTGGACGGCGGAGGAGGACAGGATCCTGGTGGCGCACATCGAGCGGCACGGGCACAGCAACTGGCGCGCGCTGCCGAGGCAGGCCGGCCTTCTCCGCTGCGGCAAGAGCTGCCGCCTCCGGTGGATCAACTACCTCCGCCCCGACATCAAGCGCGGCAACTTCACCCGCGAGGAGGAGGACGCCATCATCCACCTCCACGACCTTCTCGGCAACCGATGGTCCGCGATTGCAGCGAGGCTGCCGGGGAGGACGGACAACGAGATCAAGAATGTGTGGCACACTCACCTCAAGAAGCGGCTGGAGCCGAAGCCGTCGTCCGGCCGGGAAGCCGCCGCGCCCAAGCGAAAGGCGACCAAGAAGGCTGCGGCGGTGGCGGTGGCGATCGACGTTCCGACCACCGTGCCGGTGTCGCCGGAGCAGTCGCTCTCGACCACGACGACGTCGGCCGCCACCACCGAGGAGTACTCGTACTCGATGGCCTCCTCCGCGGATCACAACACCACGGACAGTTTCACCTCGGAGGAGGAGTTCCAGATCGACGACAGCTTCTGGTCGGAGACGCTGGCAATGACGGTGGACAGCACCGACTCCGGGATGGAGATGAGCGGCGGCGATCCTCTCGGCGCGGGCGGTGCCTCGCCGTCGTCGAGCAACGACGACGACATGGACGACTTCTGGCTCAAGCTGTTCATCCAGGCCGGTGGCATGCAGAATTTGCCCCAGATTTAA
More
|
||||||||||
| Protein seq | MGRAPCCEKMGLKRGPWTAEEDRILVAHIERHGHSNWRALPRQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDAIIHLHDLLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLEPKPSSGREAAAPKRKATKKAAAVAVAIDVPTTVPVSPEQSLSTTTTSAATTEEYSYSMASSADHNTTDSFTSEEEFQIDDSFWSETLAMTVDSTDSGMEMSGGDPLGAGGASPSSSNDDDMDDFWLKLFIQAGGMQNLPQI |
||||||||||
| Function | Transcription factor MYB30 [UniProtKB/Swiss-Prot:Q6K1S6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0624300 | OsNip_02t0624300-01 | Chr02 | 24878777 | 24879932 | - | RAP2018-11-26 | ||
| CDS seq | ATGGGGAGGGCGCCGTGCTGCGAGAAGATGGGGCTGAAGAGGGGGCCGTGGACGGCGGAGGAGGACAGGATCCTGGTGGCGCACATCGAGCGGCACGGGCACAGCAACTGGCGCGCGCTGCCGAGGCAGGCCGGCCTTCTCCGCTGCGGCAAGAGCTGCCGCCTCCGGTGGATCAACTACCTCCGCCCCGACATCAAGCGCGGCAACTTCACCCGCGAGGAGGAGGACGCCATCATCCACCTCCACGACCTTCTCGGCAACCGATGGTCCGCGATTGCAGCGAGGCTGCCGGGGAGGACGGACAACGAGATCAAGAATGTGTGGCACACTCACCTCAAGAAGCGGCTGGAGCCGAAGCCGTCGTCCGGCCGGGAAGCCGCCGCGCCCAAGCGAAAGGCGACCAAGAAGGCTGCGGCGGTGGCGGTGGCGATCGACGTTCCGACCACCGTGCCGGTGTCGCCGGAGCAGTCGCTCTCGACCACGACGACGTCGGCCGCCACCACCGAGGAGTACTCGTACTCGATGGCCTCCTCCGCGGATCACAACACCACGGACAGTTTCACCTCGGAGGAGGAGTTCCAGATCGACGACAGCTTCTGGTCGGAGACGCTGGCAATGACGGTGGACAGCACCGACTCCGGGATGGAGATGAGCGGCGGCGATCCTCTCGGCGCGGGCGGTGCCTCGCCGTCGTCGAGCAACGACGACGACATGGACGACTTCTGGCTCAAGCTGTTCATCCAGGCCGGTGGCATGCAGAATTTGCCCCAGATTTAA
More
|
|||||||
| Protein seq | MGRAPCCEKMGLKRGPWTAEEDRILVAHIERHGHSNWRALPRQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDAIIHLHDLLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLEPKPSSGREAAAPKRKATKKAAAVAVAIDVPTTVPVSPEQSLSTTTTSAATTEEYSYSMASSADHNTTDSFTSEEEFQIDDSFWSETLAMTVDSTDSGMEMSGGDPLGAGGASPSSSNDDDMDDFWLKLFIQAGGMQNLPQI
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0624300 | OsNip_02t0624300-02 | Chr02 | 24878777 | 24879933 | - | IsoSeq | ||
| CDS seq | ATGTGTGGCACACTCACCTCAAGAAGCGGCTGGAGCCGAAGCCGTCGTCCGGCCGGGAAGCCGCCGCGCCCAAGCGAAAGGCGACCAAGAAGGCTGCGGCGGTGGCGGTGGCGATCGACGTTCCGACCACCGTGCCGGTGTCGCCGGAGCAGTCGCTCTCGACCACGACGACGTCGGCCGCCACCACCGAGGAGTACTCGTACTCGATGGCCTCCTCCGCGGATCACAACACCACGGACAGTTTCACCTCGGAGGAGGAGTTCCAGATCGACGACAGCTTCTGGTCGGAGACGCTGG
More
|
|||||||
| Protein seq | MCGTLTSRSGWSRSRRPAGKPPRPSERRPRRLRRWRWRSTFRPPCRCRRSSRSRPRRRRPPPPRSTRTRWPPPRITTPRTVSPRRRSSRSTTASGRRRW |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.216401 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0517100 | RBH | 1.783421 | 1.523612 | 3.962170 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g41510 | RBH | 0.0 | 0.122692 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0624300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0025650 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0025800 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0025620 | RBH | 0.562899 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0025230 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0025330 | RBH | 0.0 | 4.925956 | 1.613063 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0404500 | RBH | 0.715922 | 180.6356125 | 0.8679345 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0025220 | RBH | 0.0 | 0.509632 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0433400 | RBH | 0.7281245 | 156.2604145 | 0.1274835 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0025420 | RBH | 0.0 | 0.173337 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0025240 | RBH | 0.000000 | 6.464422 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0025570 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0025450 | RBH | 0.0 | 0.418251 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0024970 | RBH | 0.000000 | 2.357901 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G025620 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0025470 | RBH | 0.0 | 13.201606 | 0.0 |
