Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_02g0025220 | OGI:02070600 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr02:26101707-26102864 | ||||||||
| Gene Symbol | MYB30, OsMYB30, OsMYB5P, MYB5P, OsMYB13a, MYB13a | ||||||||||
| DNA seq | GAAAGATAATATTGCCTTCTTTCGTTTCCCATCAATCTCTCCGCTTTGTAAAGATTTACACAGCTCCAAAGATTCAAAGAATAGTGGTGGTAAGAAAAATGAACAAGAGATCGACCCAAGAGGCCAATTCTCTGCCTAAATTAAATCTGGGGCAAATTCTGCATGCCACCGGCCTGGATGAACAGCTTGAGCCAGAAGTCGTCCATGTCGTCGTCGTTGCTCGACGACGGCGAGGCACCGCCCGCGCCGAGAGGATCGCCGCCGCTCATCTCCATCCCGGAGTCGGTGCTGTCCACCGTCATTGCCAGCGTCTCCGACCAGAAGCTGTCGTCGATCTGGAACTCCTCCTCCGAGGTGAAACTGTCCGTGGTGTTGTGATCCGCGGAGGAGGCCATCGAGTACGAGTACTCCTCGGTGGTGGCGGCCGACGTCGTCGTGGTCGAGAGCGACTGCTCCGGCGACACCGGCACGGTGGTCGGAACGTCGATCGCCACCGCCACCGCCGCAGCCTTCTTGGTCGCCTTTCGCTTGGGCGCGGCGGCTTCCCGGCCGGACGACGGCTTCGGCTCCAGCCGCTTCTTGAGGTGAGTGTGCCACACATTCTTGATCTCGTTGTCCGTCCTCCCCGGCAGCCTCGCTGCAATCGCGGACCATCTGAATCATTCGCCACAAATCGAGTTAATTAACCAATAAACAAATCCGAGACAAAATCTTTCGCGTATCCAAGGCAAAAGATTAGTAAACTAGTATTGGACAGTGGCTTGAAAAGTACCGGTTGCCGAGAAGGTCGTGGAGGTGGATGATGGCGTCCTCCTCCTCGCGGGTGAAGTTGCCGCGCTTGATGTCGGGGCGGAGGTAGTTGATCCACCGGAGGCGGCAGCTCTTGCCGCAGCGGAGAAGGCCGGCCTGCCTCGGCAGCGCGCGCCAGTTGCTGTGCCCGTGCCGCTCGATGTGCGCCACCAGGATCCTGTCCTCCTCCGCCGTCCACGGCCCCCTCTTCAGCCCCATCTTCTCGCAGCACGGCGCCCTCCCCATTGCCGACCTTTCCTCCTCTCGTTCGAGCTCTCGCGCCCTGTGCGTTTGTTTGTGTTTGTGTGTGATGGATTGATTGCTCGGTGTGTGTGTGTTGCTGATGCTGCGTCGTCTGTGTGATGCTGC
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| CDS seq | ATGGGGAGGGCGCCGTGCTGCGAGAAGATGGGGCTGAAGAGGGGGCCATGGTCCGCGATTGCAGCGAGGCTGCCGGGGAGGACGGACAACGAGATCAAGAATGTGTGGCACACTCACCTCAAGAAGCGGCTGGAGCCGAAGCCGTCGTCCGGCCGGGAAGCCGCCGCGCCCAAGCGAAAGGCGACCAAGAAGGCTGCGGCGGTGGCGGTGGCGATCGACGTTCCGACCACCGTGCCGGTGTCGCCGGAGCAGTCGCTCTCGACCACGACGACGTCGGCCGCCACCACCGAGGAGTACTCGTACTCGATGGCCTCCTCCGCGGATCACAACACCACGGACAGTTTCACCTCGGAGGAGGAGTTCCAGATCGACGACAGCTTCTGGTCGGAGACGCTGGCAATGACGGTGGACAGCACCGACTCCGGGATGGAGATGAGCGGCGGCGATCCTCTCGGCGCGGGCGGTGCCTCGCCGTCGTCGAGCAACGACGACGACATGGACGACTTCTGGCTCAAGCTGTTCATCCAGGCCGGTGGCATGCAGAATTTGCCCCAGATTTAA
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| Protein seq | MGRAPCCEKMGLKRGPWSAIAARLPGRTDNEIKNVWHTHLKKRLEPKPSSGREAAAPKRKATKKAAAVAVAIDVPTTVPVSPEQSLSTTTTSAATTEEYSYSMASSADHNTTDSFTSEEEFQIDDSFWSETLAMTVDSTDSGMEMSGGDPLGAGGASPSSSNDDDMDDFWLKLFIQAGGMQNLPQI |
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| Function | Transcription factor MYB30 [UniProtKB/Swiss-Prot:Q6K1S6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_02g0025220 | OsIR64_02g0025220.01 | Chr02 | 26101707 | 26102741 | - | NAM | ||
| CDS seq | ATGGGGAGGGCGCCGTGCTGCGAGAAGATGGGGCTGAAGAGGGGGCCATGGTCCGCGATTGCAGCGAGGCTGCCGGGGAGGACGGACAACGAGATCAAGAATGTGTGGCACACTCACCTCAAGAAGCGGCTGGAGCCGAAGCCGTCGTCCGGCCGGGAAGCCGCCGCGCCCAAGCGAAAGGCGACCAAGAAGGCTGCGGCGGTGGCGGTGGCGATCGACGTTCCGACCACCGTGCCGGTGTCGCCGGAGCAGTCGCTCTCGACCACGACGACGTCGGCCGCCACCACCGAGGAGTACTCGTACTCGATGGCCTCCTCCGCGGATCACAACACCACGGACAGTTTCACCTCGGAGGAGGAGTTCCAGATCGACGACAGCTTCTGGTCGGAGACGCTGGCAATGACGGTGGACAGCACCGACTCCGGGATGGAGATGAGCGGCGGCGATCCTCTCGGCGCGGGCGGTGCCTCGCCGTCGTCGAGCAACGACGACGACATGGACGACTTCTGGCTCAAGCTGTTCATCCAGGCCGGTGGCATGCAGAATTTGCCCCAGATTTAA
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| Protein seq | MGRAPCCEKMGLKRGPWSAIAARLPGRTDNEIKNVWHTHLKKRLEPKPSSGREAAAPKRKATKKAAAVAVAIDVPTTVPVSPEQSLSTTTTSAATTEEYSYSMASSADHNTTDSFTSEEEFQIDDSFWSETLAMTVDSTDSGMEMSGGDPLGAGGASPSSSNDDDMDDFWLKLFIQAGGMQNLPQI |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_02g0025220 | OsIR64_02g0025220.02 | Chr02 | 26101709 | 26102864 | - | IsoSeq | ||
| CDS seq | ATGTGTGGCACACTCACCTCAAGAAGCGGCTGGAGCCGAAGCCGTCGTCCGGCCGGGAAGCCGCCGCGCCCAAGCGAAAGGCGACCAAGAAGGCTGCGGCGGTGGCGGTGGCGATCGACGTTCCGACCACCGTGCCGGTGTCGCCGGAGCAGTCGCTCTCGACCACGACGACGTCGGCCGCCACCACCGAGGAGTACTCGTACTCGATGGCCTCCTCCGCGGATCACAACACCACGGACAGTTTCACCTCGGAGGAGGAGTTCCAGATCGACGACAGCTTCTGGTCGGAGACGCTGG
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| Protein seq | MCGTLTSRSGWSRSRRPAGKPPRPSERRPRRLRRWRWRSTFRPPCRCRRSSRSRPRRRRPPPPRSTRTRWPPPRITTPRTVSPRRRSSRSTTASGRRRW |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.509632 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0624300 | RBH | 0.0 | 0.216401 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g41510 | RBH | 0.0 | 0.122692 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0624300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0025650 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0025800 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0025620 | RBH | 0.562899 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0025230 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0025330 | RBH | 0.0 | 4.925956 | 1.613063 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0404500 | RBH | 0.715922 | 180.6356125 | 0.8679345 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0024260 | SBH | 0.0 | 0.534992 | 0.355168 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0433400 | RBH | 0.7281245 | 156.2604145 | 0.1274835 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0025420 | RBH | 0.0 | 0.173337 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0025240 | RBH | 0.000000 | 6.464422 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0025570 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0025450 | RBH | 0.0 | 0.418251 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0024970 | RBH | 0.000000 | 2.357901 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G025620 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0025470 | RBH | 0.0 | 13.201606 | 0.0 |
