Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0474000 | OGI:02047310 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:16150047-16152871 | ||||||||
| Gene Symbol | OsFbox088, OsFbox88, Os_F0475 | ||||||||||
| DNA seq | TCTCTCGCTATCTCTCGTCATCTCCATCCTCTCTCGCCATCTCTCCTGTCTCCTCGAATCCTAAGCCCCGGCGGCTGCTGCTCCCTCCCTAGCGGCGGCTGCTGCTCTTCCTCCCCGGCGTGGTGGCGGTTGCTCCCCTCCCCGTCCTGGTGGCATCTGCTACGCCCCCCTCCCCGGCTGCCCCCTCCCCTCCCCGACGTGGAGCCGAAGGCGGCTCCTGCTGCCTCTCCCCGGTGTGGGAGCGTGGCGGCAGCGGCGGCGGTTGCTTCCCTCCCGGCGTGGTGGCAGCAGCTGCCCCCCCTCCCCGACATTGTGTTGACGGTGGCTCCTACTCTCCCTTCCCGGCATGGTGACGGCGGCTGTGGCGGCTGCTTCCCTCCCCCGGCGTGGTGGTAGCAGCTGCCCGCTGCCTCCTCCTTCCCGGCTGCCCCTCATCTCCCCGATGTGGAGCCGAAGGCGGCTCCTGCTGCCTCTCCCCGGTGTGGGAGCGTGGCGGCAGCGGCGGCGGTTGCTTCCCTCCCGGCGTGGTGGCAGCAGCTGCCCCCCCTCCCCGACATCGTGTTGACGGTGGCTCCTACTCTCCCTTCCCGGCATGGCGATGGCGGCTGTGGCGGCTGCTTCCCTCCCCCGGCGTGGTGGTAGCAGCTGCCCGCTGCCCCCTCCTTCCCGGCTGCCCCTCATCTCCCCGATGTGGAGCCGATGGCGCTTCTCTCCTCCATCGCGACGGTTTGATTTGGGAATATTTTGAGGATTTTGTGATTTGGGATGTTGATTCAGTAACCACCGTGATGAGGATTAAGTTTCTTGCGATCAAATTCATGAGCTCTAGATTGAATTTGGCTTTTTCATACTGTTTTTGGTCGTCTCGTTTGATTGATTTGGGATCGCTTGGGGATTATTTTTCTATGTTCGAGTCGGACTGGAAGGACAGACAAACCGAAAACATCACAAAAATCGCAAAAAAACGCGGGAATCGGACTTGAGCAGTGGGACGACGTACGAAAATATTTGGTAGAAACATCTTAAACTTTTATAATAGGTAGAGATAGAGATAGAGATAAGTAGGTTAGATAGATATATCCAGTTGGTTTATTCGTTTGGTGGTCGCAAATAAATCGTAGGCGAGACTTTTCCGTCTCCTAGACGGACTCGGTGGCCGTACGTGTCACCTGTTCTGTCCCTGCAAAGAAATACTATGGTATAACTAGCTAGACGAGACCTTTTTGGTCTCTACTAGACAGATACCGTAACAGTGTCTGTCTTACCTGGATTACTGGAACATTGCAGTATTTATACCTACATATATATATATGTGCACACAATTCATTATGAATAATCATAAGTCTCTCTCCCTTTGGCTGCATGCATGCCACGAAGATGCAGAAGATGGGTGTGAAGAGGAGGAAGAGCAGAAGCAAGCACACAAACACGACGTCGTACTCCTCCCGAGCTGATGGAAGACATGGTTACGGAGATCCTGGTGCGGCTGCCTGTCAAGTCCCTCCTGCGGTTCAAGCCCGCGTGCAGAGCCTGGCAAGCCATCATCGACGACCCCGTGTTCATCCGAGCTCACCTGCGCCGCTCCGCCTCCAGGTGGGAGCAGAGCCACAGCTTCATCATCAACCCTCACAGCATGGTCAGAGTCCCTTGGGATCGGTGGCCAGTCCCCTCCAATCGCTACCGCTTCCATCAGTGGCAGCTGCAACGCGGCACCACCACCACCTCTCCCAGAAACAATAATGTGGCGACGTTCTTGCATGCCAAGGACTTATCTGACGATCAGCAGTTCTACACAACCGAGTTCACGCACCGCGACGGCCTGGTGTTTTCTACCACCACCACCAGCCTCCACGTCTTCAACCCAGCCACCAGGGATGCCATCACGCTGCCTACCAGTTCCAGGTCCAATCTAATGGGAGGTGGAAGATTCAACTACCACTGCTCGGGTCTAGGCCTGGATCCACGCACCGGCATGTACAAGGTAGTCCAGGCTTTCTTCCGGTTCCAGTCAATGGAACCAGCTGAAACAAAAATGGGGATGGAGGTGTTCACCATTGGAGGAGGAGGTGGTGGTGCCGGTTGGAGGGAGATCACGAGTGATCCTCCATACCCAGCCAAGAGATTCCAGATCGGCGTGTCTGTCTGCGGCTACATGTTCTGGCGCTTTTCCGAGAGGCATACGAAGCTCGAGCGCGGCATCCTCCATCTTAGCCTGGAGGAAGAGGAGTTCGGCATCACCGGCCTGCCAGATGAGCTGGACACTGATAACAGCTTCTTGCTGGACGAGCTACTCGGCCGGGATCTGTGTGTGTCGGCGTCTAACACCAGCTGCACGATGCTGAACATATGGACGCTGCCTGTAGCGGACGAGAGCCTGTGCACGCTGTGGCAATGGCGTTACTGCATCGATTACCCCTGGAGTCTTTGCTCTGTGATGGCTCTTCCTCCTTTCAGCGATGAAATCATCTTGTTGCGAGGTAATAATATATGTCGCTATGATCTGGCGACTTCTAAGCTCAAGATACTATGTAGATTGGATCGCACGAGGTACCAGGGGGAGGGGGCACGGAAGTCGGAATTGTTCAGTGCCATGCCGTTCATCGAAAGTCTCGTTCGGATCACTTATTAATAGCCGATCATCGCCCTGTTCAGTTGGGGCTTTAGCCTTCAGCAGCAAAGCCAGCACAAACAGGATTTTGTGCCTTCTCAGCTGTCTGCAGCGCTGCCGCAGAATAAGCAGCTATTTGCATGTTTATCTATTTTATATGTATTTTGAACCATGTGATATGTACTAATTAAGTTAAAAGTTTTATGCTTAGCTAGTG
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| CDS seq | ATGGAAGACATGGTTACGGAGATCCTGGTGCGGCTGCCTGTCAAGTCCCTCCTGCGGTTCAAGCCCGCGTGCAGAGCCTGGCAAGCCATCATCGACGACCCCGTGTTCATCCGAGCTCACCTGCGCCGCTCCGCCTCCAGGTGGGAGCAGAGCCACAGCTTCATCATCAACCCTCACAGCATGGTCAGAGTCCCTTGGGATCGGTGGCCAGTCCCCTCCAATCGCTACCGCTTCCATCAGTGGCAGCTGCAACGCGGCACCACCACCACCTCTCCCAGAAACAATAATGTGGCGACGTTCTTGCATGCCAAGGACTTATCTGACGATCAGCAGTTCTACACAACCGAGTTCACGCACCGCGACGGCCTGGTGTTTTCTACCACCACCACCAGCCTCCACGTCTTCAACCCAGCCACCAGGGATGCCATCACGCTGCCTACCAGTTCCAGGTCCAATCTAATGGGAGGTGGAAGATTCAACTACCACTGCTCGGGTCTAGGCCTGGATCCACGCACCGGCATGTACAAGGTAGTCCAGGCTTTCTTCCGGTTCCAGTCAATGGAACCAGCTGAAACAAAAATGGGGATGGAGGTGTTCACCATTGGAGGAGGAGGTGGTGGTGCCGGTTGGAGGGAGATCACGAGTGATCCTCCATACCCAGCCAAGAGATTCCAGATCGGCGTGTCTGTCTGCGGCTACATGTTCTGGCGCTTTTCCGAGAGGCATACGAAGCTCGAGCGCGGCATCCTCCATCTTAGCCTGGAGGAAGAGGAGTTCGGCATCACCGGCCTGCCAGATGAGCTGGACACTGATAACAGCTTCTTGCTGGACGAGCTACTCGGCCGGGATCTGTGTGTGTCGGCGTCTAACACCAGCTGCACGATGCTGAACATATGGACGCTGCCTGTAGCGGACGAGAGCCTGTGCACGCTGTGGCAATGGCGTTACTGCATCGATTACCCCTGGAGTCTTTGCTCTGTGATGGCTCTTCCTCCTTTCAGCGATGAAATCATCTTGTTGCGAGGTAATAATATATGTCGCTATGATCTGGCGACTTCTAAGCTCAAGATACTATGTAGATTGGATCGCACGAGGTACCAGGGGGAGGGGGCACGGAAGTCGGAATTGTTCAGTGCCATGCCGTTCATCGAAAGTCTCGTTCGGATCACTTATTAA
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| Protein seq | MEDMVTEILVRLPVKSLLRFKPACRAWQAIIDDPVFIRAHLRRSASRWEQSHSFIINPHSMVRVPWDRWPVPSNRYRFHQWQLQRGTTTTSPRNNNVATFLHAKDLSDDQQFYTTEFTHRDGLVFSTTTTSLHVFNPATRDAITLPTSSRSNLMGGGRFNYHCSGLGLDPRTGMYKVVQAFFRFQSMEPAETKMGMEVFTIGGGGGGAGWREITSDPPYPAKRFQIGVSVCGYMFWRFSERHTKLERGILHLSLEEEEFGITGLPDELDTDNSFLLDELLGRDLCVSASNTSCTMLNIWTLPVADESLCTLWQWRYCIDYPWSLCSVMALPPFSDEIILLRGNNICRYDLATSKLKILCRLDRTRYQGEGARKSELFSAMPFIESLVRITY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0474000 | OsNip_02t0474000-01 | Chr02 | 16150047 | 16152871 | + | RAP2018-11-26 | ||
| CDS seq | ATGGAAGACATGGTTACGGAGATCCTGGTGCGGCTGCCTGTCAAGTCCCTCCTGCGGTTCAAGCCCGCGTGCAGAGCCTGGCAAGCCATCATCGACGACCCCGTGTTCATCCGAGCTCACCTGCGCCGCTCCGCCTCCAGGTGGGAGCAGAGCCACAGCTTCATCATCAACCCTCACAGCATGGTCAGAGTCCCTTGGGATCGGTGGCCAGTCCCCTCCAATCGCTACCGCTTCCATCAGTGGCAGCTGCAACGCGGCACCACCACCACCTCTCCCAGAAACAATAATGTGGCGACGTTCTTGCATGCCAAGGACTTATCTGACGATCAGCAGTTCTACACAACCGAGTTCACGCACCGCGACGGCCTGGTGTTTTCTACCACCACCACCAGCCTCCACGTCTTCAACCCAGCCACCAGGGATGCCATCACGCTGCCTACCAGTTCCAGGTCCAATCTAATGGGAGGTGGAAGATTCAACTACCACTGCTCGGGTCTAGGCCTGGATCCACGCACCGGCATGTACAAGGTAGTCCAGGCTTTCTTCCGGTTCCAGTCAATGGAACCAGCTGAAACAAAAATGGGGATGGAGGTGTTCACCATTGGAGGAGGAGGTGGTGGTGCCGGTTGGAGGGAGATCACGAGTGATCCTCCATACCCAGCCAAGAGATTCCAGATCGGCGTGTCTGTCTGCGGCTACATGTTCTGGCGCTTTTCCGAGAGGCATACGAAGCTCGAGCGCGGCATCCTCCATCTTAGCCTGGAGGAAGAGGAGTTCGGCATCACCGGCCTGCCAGATGAGCTGGACACTGATAACAGCTTCTTGCTGGACGAGCTACTCGGCCGGGATCTGTGTGTGTCGGCGTCTAACACCAGCTGCACGATGCTGAACATATGGACGCTGCCTGTAGCGGACGAGAGCCTGTGCACGCTGTGGCAATGGCGTTACTGCATCGATTACCCCTGGAGTCTTTGCTCTGTGATGGCTCTTCCTCCTTTCAGCGATGAAATCATCTTGTTGCGAGGTAATAATATATGTCGCTATGATCTGGCGACTTCTAAGCTCAAGATACTATGTAGATTGGATCGCACGAGGTACCAGGGGGAGGGGGCACGGAAGTCGGAATTGTTCAGTGCCATGCCGTTCATCGAAAGTCTCGTTCGGATCACTTATTAA
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| Protein seq | MEDMVTEILVRLPVKSLLRFKPACRAWQAIIDDPVFIRAHLRRSASRWEQSHSFIINPHSMVRVPWDRWPVPSNRYRFHQWQLQRGTTTTSPRNNNVATFLHAKDLSDDQQFYTTEFTHRDGLVFSTTTTSLHVFNPATRDAITLPTSSRSNLMGGGRFNYHCSGLGLDPRTGMYKVVQAFFRFQSMEPAETKMGMEVFTIGGGGGGAGWREITSDPPYPAKRFQIGVSVCGYMFWRFSERHTKLERGILHLSLEEEEFGITGLPDELDTDNSFLLDELLGRDLCVSASNTSCTMLNIWTLPVADESLCTLWQWRYCIDYPWSLCSVMALPPFSDEIILLRGNNICRYDLATSKLKILCRLDRTRYQGEGARKSELFSAMPFIESLVRITY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.774810 | 1.569194 | 2.945289 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g27400 | RBH | 1.190083 | 1.029894 | 0.755831 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0474000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0016860 | RBH | 2.193114 | 2.426846 | 11.556305 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0016970 | RBH | 0.572420 | 2.524544 | 4.199785 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0016870 | RBH | 2.539353 | 8.466831 | 13.383122 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0016740 | RBH | 0.395002 | 0.194679 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0016660 | RBH | 9.776774 | 15.805243 | 31.321560 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0270100 | RBH | 8.955091 | 42.019552 | 49.291393 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0016420 | RBH | 0.300092 | 0.871008 | 2.155801 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0291000 | RBH | 17.5057705 | 88.479702 | 34.999449 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0016980 | RBH | 0.171072 | 0.566916 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0016530 | RBH | 1.195912 | 12.452439 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0017070 | RBH | 1.217172 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0016850 | RBH | 1.488894 | 2.054478 | 2.050351 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0016600 | RBH | 0.660928 | 9.183027 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G017030 | RBH | 0.472170 | 5.532261 | 4.980724 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0016740 | RBH | 3.795384 | 25.719503 | 11.213490 |
