Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNaBo_02g0016740 OGI:02047310 | 16/16 NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) Chr02:17629184-17635014
Gene Symbol OsFbox088, OsFbox88, Os_F0475
DNA seq

cctctctctcgtgaaaagcaatggcggcggtggcgattcgggcggagcgacggtggcggcgacgattccggcggagccacaatgattccaacaagcggcaacagcgcgaagtcccttcctttctctcgtgaaaagcggcggtggcgacaattccggcgagcggcgatggcgcgtagcgtgaagccacggctgtctgagccactcggatatcgtgcagcgaactgatgccacccgagcccggtctgatgtcatgcgtggcgccgtcctggttctcctccgcacgcagccaaggccgcgatgacgagcctcgacctcacacgacccccaaaagacgggcgcaaggccggtccaaggcgatggctagggtgcgtgcacggcggtgctgatgccgtgctcgcatcacatgatggcagcaatttgccaaatcggtaagtcatcaatccaattcgcttgccgaggttctaattttggggatttttcgatttagggtttctgaaatcatgccaagtgtggaatttttgtatgttgtatattgaagttctcatggtgtaacacgatgtggtttaaatttaatccgatctatgtaaaatcttgactgaaaccaatttgatgcggactcgggatgacgcgatagggactgatgaaatttttttttacgacggacgaaaattttaccggaatccttacgtattgtttaagtaggtatatatatatatatagatatagatatatatgtagatatagatatagatatataaaactagcaaaagtgcccgtgcgttgcaccgggtgattacagagtgtgtatattgaccaaaagtgtccgtccgttgcaccgggaagcgtacagatcagaaaaatatgcaattaattaaaatacagattcgctgaaatatttggtatttttaagtaggtatgtgtataattaaataaatttacaagtaaagcaagtgtgagaaataaaatcatatggttaaatttaattttattaaattcttcatgattagttatgctctttgaaattttattggaattttcagagcttaattgctaattttaataatacagacatcatttaacaattatgtaattagaaaaagaaagaaaatacttccttttaggtttgcttcaaaataaacacataataactataattgtaatgcttctgaaaaaaataaagtactaaaaataaacttcttctctttatctttggcccgagggacctaaaatagacttatttccgtcccttgccggtcggcccacggccttatgaaaaccctaaccctaaccctccccctcccccccccacagccgagtcggccgcctcccccactcccgacgccgcttcccctcccctccggcggcgcctttccccatggtgagcggcggcggcggcgacgcccttccccatgctagcagcagtggcggcggtggctctccttcccaactcgccggcacggcgcagcgatggcggagatggcggcgacggccgtccttcccctctccctctccctctccccgtcagcgtcgacggcggtgtcggcttcgtccgagggtggatccatcggcggtggcggccaccgcgggcggatctgacagcggcgctccctccggcggcggtggtggcgtcagcggccgccgatttcttttttgcaattttttccatggctattgctaaccaaatcggattgagcacgtggacgaacgggacgaaaatagatgtgatgaaaggaataatacgaatatttatattagttatagattatagaaaaaatgccagtgcgttgcaacgggtaaactaaaattatattaaatataaaaatattagatgattaggatttagttttatatgatatgagctcttaaagaaaatctattcctaatgaaataaaaaaagttcaacttaagggacctcaagtgaacttattctgtgcggagtagaacaaattcgggacaactttagggatattaaataaacttattctgtgagattacaagcggcccaatagtgtgggcggcctgggaaggcccgacgagggagaagctgagcggttcGATCTGATGGATGGTACTGATTGATCGCGCCCTATATATAAAAGTTGAAAGATCAAACCCTAACCCTAAAAACATTCCCCACCCCCTCCCTCTCTCTCAGTGGCGCCGCCTCTCTCCCTCCGCCGCTCCTCCACCCCCCCGGCGGCGCCGCTCCCCCTCCCCCTCCCCCTCCACGGCGGCGCCTCTACCCCCTCTCTCTCGCCTCCCTCGTGCGACGGATCCGGCGTCGGCGGCGACCGTGGGTGGATCCGGCCGTGGTGGTGGCGGCCGAGGTCGGATCCGGTGGCGGCGGCTCCCTTCAACCCCTCTCGCCTCTCTCCCGCGGTGGATCTGACGGCGGTGGTGGCATCGACGCCGACCGCATGTGGGCTCGGCGGCTGCTACTCCCCTTCCCCGGTGTGGCGACGCGGCTGGGAGCGGCGGTGGGCTCAGGAGCCGGTCGCGGCGGAAGGCGGCGATATCGACGACGACCACGACGGACAACGGCGACAACGGCAGGGACGACGTCGACCACGAGGAGGGCGGCTCCGGTAGGCAGCTACGGTTAGGGTTTGGATTTTATTTTTGATTTGGGATGTTGATTTTGTCGAGATTCATGGTTTTGATTTGGGATTGCAATTAAGTGATTTTGTAATTCATATAGTTTGGGAATTGGAGGCAAAAGGGTTGGGAACAATCGGGATTTTTTTTATCCGACTGGAATTTTTTGGGGGGTGGGGGAGGGACGAAAAATCCccctggcggacgatgtgacgaccggaaaaatacgaatatttatattagttatagatttgtcaaaccacaagataatcacgaaatttatataacgtatatattttgtataggttaatgacatctatggtcaattatgcagagctataaaagattactatttgtacatcataccagtcttgaaaaattaaaactttcaaggccctagacatcaattaattaaaactttcaaggccctagacatcaatttgtgagtactaatataggggtatcttttaaaatattttgtatatacttaagtatatgataaaatatactattaggggtgaaaataaaaatatgctaggagtcagatgccacgtgctgacgtgcaggttcgccttttctccatccgcctctttcttttttctttctctcgctatctctcgtcatctccatcctctctcgccatctctcctgtctcctcgaatcctaagccccggcggctgctgctccctccctagcggcggctgctgctcttcctccccagcgtggtggcggttgctcccctccccgtcctggtggcatctgctatgcccccctccccggctgccccctcccctccccgacgtggagccgaaggcggctcctgctgcctctccccggtgtgggagcgtggcggcagcggcggcggttgcttccctcccggcgtggtggcagaagctgCcccccccctccccgacatcgtgctgacggtggctcctactctcccttcccggcatggcgacggcagctgtggcggctgcttccctcccccggcgtggtggtagcagctgcccgctgccccctccttcccggctgcccctcatctccccgatgtggagccgattgcgcttctctcctccatcgcgacggtttgatttgggaatattttgaggattttgtgatttgggatgttgattcagtaaccaccgtgatgaggattaagtttcttgcgatcaaattcatgagctctagattgaatttggctttttcatactgtttttggtcgtctcgtttgattgatttgggatcgcttggggattatttttctatgttcaattcggactggaaggacagaccaaccgaaaacatcacaaaaatcgcaaaaaaacacgggaatcggacttgagcagtgggacgacgtacgaaaatatttggtagaaacatcttaaacttttataatagatagagatagagataagtaggttagatagatatatccagttggtttattcgtttggtggtcgcaaataaatcgtaggcgagacttttccgtctcctagacggactcggtggccgtacgtgtcacctgttctgtccctgcaaagaaatactatggtataactagctagacgagacctttttggtctctactagacagataccgtaacagtgtctgtcttacctggattactggaacattgcagtatttatacctacatatatatgtgcacacaattcattatgaataatcataagtccctctccctttggctgcatgcatgccacgaagatgcagaagatgggtgtgaagaggaggaagagcagaagcaagcacacaaacacgacgtcgtactcctcccgagctgatggaagacatggttacggagatcctggtgcggctgcctgtcaagtccctcctgcggttcaagcccgcgtgcagagcctggcaagccatcatcgacgaccccgtgttcatccgagctcacctgcgccgctccgcctccaggtgggagcagagccacagcttcatcatcaaccctcacagcatggtcagagtcccttgggatcggtggccagtcccctccaatcgctaccgcttccatcagtggcagctgcaacgcggcaccaccaccacctctcccagaaacaataatgtggcgacgttcttgcatgccaaggacttatctgacgatcagcagttctacacaaccgagttcacgcaccgcgatggcctggtgttttctaccaccaccaccagcctccacgtcttcaacccagccaccagggatgccatcacgctgcctaccagttccaggtccaatctaatgggaggtggaagattcaactaccactgctcgggtctaggcctgcatccacgcaccggcatgtacaaggtagtccaggctttcttccggttccagtcaatggaaccagctgaaacaaaaatggggatggaggtgttcaccattggaggaggaggtggtggtgccggttggagggagatcacgagtgatcctccatacccagccaagagattccagatcggcgtgtctgtctgcggctacatgttctggcgcttttccgagaggcatacgaagctcgagcgcggcatcctccatcttagcctggaggaagaggagttcggcatcaccggcctgccagatgagctggacactgataacagcttcttgctggacgagctactcggccgggatctgtgtgtgtcggcgtctaacaccagctgcacgatgctgaacatatggacgctgcctgtagcggacgagagcctgtgcacgctgtggcaatggcgttactgcatcgagtacccctggagtctttgctctgtgatggctcttcctcctttcagcgatgaaatcatcttgttgcgaggtaataatatatgtcgctatgatctggcgacttctaagctcaagatactatgtagattggatcgcacgaggtaccagggggagggggcacggaagtcggaattgttcagtgccatgccgttcatcgaaagtctcgttcggatcacttattaatagccgatcatcgccctgttcagttggggctttagccttcagcagcaaagccagcacaaacaggattttgtgccttagctgtctgcagcgctgccgcagaataagcagctatttgcatgtttatctattttatatgtattttgaaccatgtgatatgtactaattaagttaaaagttttatgcttagctagtgaatatctgtgtggtactttcatcttaaccatataaatatggaaattcctagcttttaattttttt

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CDS seq

atggaagacatggttacggagatcctggtgcggctgcctgtcaagtccctcctgcggttcaagcccgcgtgcagagcctggcaagccatcatcgacgaccccgtgttcatccgagctcacctgcgccgctccgcctccaggtgggagcagagccacagcttcatcatcaaccctcacagcatggtcagagtcccttgggatcggtggccagtcccctccaatcgctaccgcttccatcagtggcagctgcaacgcggcaccaccaccacctctcccagaaacaataatgtggcgacgttcttgcatgccaaggacttatctgacgatcagcagttctacacaaccgagttcacgcaccgcgatggcctggtgttttctaccaccaccaccagcctccacgtcttcaacccagccaccagggatgccatcacgctgcctaccagttccaggtccaatctaatgggaggtggaagattcaactaccactgctcgggtctaggcctgcatccacgcaccggcatgtacaaggtagtccaggctttcttccggttccagtcaatggaaccagctgaaacaaaaatggggatggaggtgttcaccattggaggaggaggtggtggtgccggttggagggagatcacgagtgatcctccatacccagccaagagattccagatcggcgtgtctgtctgcggctacatgttctggcgcttttccgagaggcatacgaagctcgagcgcggcatcctccatcttagcctggaggaagaggagttcggcatcaccggcctgccagatgagctggacactgataacagcttcttgctggacgagctactcggccgggatctgtgtgtgtcggcgtctaacaccagctgcacgatgctgaacatatggacgctgcctgtagcggacgagagcctgtgcacgctgtggcaatggcgttactgcatcgagtacccctggagtctttgctctgtgatggctcttcctcctttcagcgatgaaatcatcttgttgcgaggtaataatatatgtcgctatgatctggcgacttctaagctcaagatactatgtagattggatcgcacgaggtaccagggggagggggcacggaagtcggaattgttcagtgccatgccgttcatcgaaagtctcgttcggatcacttattaa

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Protein seq

MEDMVTEILVRLPVKSLLRFKPACRAWQAIIDDPVFIRAHLRRSASRWEQSHSFIINPHSMVRVPWDRWPVPSNRYRFHQWQLQRGTTTTSPRNNNVATFLHAKDLSDDQQFYTTEFTHRDGLVFSTTTTSLHVFNPATRDAITLPTSSRSNLMGGGRFNYHCSGLGLHPRTGMYKVVQAFFRFQSMEPAETKMGMEVFTIGGGGGGAGWREITSDPPYPAKRFQIGVSVCGYMFWRFSERHTKLERGILHLSLEEEEFGITGLPDELDTDNSFLLDELLGRDLCVSASNTSCTMLNIWTLPVADESLCTLWQWRYCIEYPWSLCSVMALPPFSDEIILLRGNNICRYDLATSKLKILCRLDRTRYQGEGARKSELFSAMPFIESLVRITY

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNaBo_02g0016740 OsNaBo_02g0016740.02 Chr02 17632369 17635014 + NAM
CDS seq

atggaagacatggttacggagatcctggtgcggctgcctgtcaagtccctcctgcggttcaagcccgcgtgcagagcctggcaagccatcatcgacgaccccgtgttcatccgagctcacctgcgccgctccgcctccaggtgggagcagagccacagcttcatcatcaaccctcacagcatggtcagagtcccttgggatcggtggccagtcccctccaatcgctaccgcttccatcagtggcagctgcaacgcggcaccaccaccacctctcccagaaacaataatgtggcgacgttcttgcatgccaaggacttatctgacgatcagcagttctacacaaccgagttcacgcaccgcgatggcctggtgttttctaccaccaccaccagcctccacgtcttcaacccagccaccagggatgccatcacgctgcctaccagttccaggtccaatctaatgggaggtggaagattcaactaccactgctcgggtctaggcctgcatccacgcaccggcatgtacaaggtagtccaggctttcttccggttccagtcaatggaaccagctgaaacaaaaatggggatggaggtgttcaccattggaggaggaggtggtggtgccggttggagggagatcacgagtgatcctccatacccagccaagagattccagatcggcgtgtctgtctgcggctacatgttctggcgcttttccgagaggcatacgaagctcgagcgcggcatcctccatcttagcctggaggaagaggagttcggcatcaccggcctgccagatgagctggacactgataacagcttcttgctggacgagctactcggccgggatctgtgtgtgtcggcgtctaacaccagctgcacgatgctgaacatatggacgctgcctgtagcggacgagagcctgtgcacgctgtggcaatggcgttactgcatcgagtacccctggagtctttgctctgtgatggctcttcctcctttcagcgatgaaatcatcttgttgcgaggtaataatatatgtcgctatgatctggcgacttctaagctcaagatactatgtagattggatcgcacgaggtaccagggggagggggcacggaagtcggaattgttcagtgccatgccgttcatcgaaagtctcgttcggatcacttattaa

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Protein seq

MEDMVTEILVRLPVKSLLRFKPACRAWQAIIDDPVFIRAHLRRSASRWEQSHSFIINPHSMVRVPWDRWPVPSNRYRFHQWQLQRGTTTTSPRNNNVATFLHAKDLSDDQQFYTTEFTHRDGLVFSTTTTSLHVFNPATRDAITLPTSSRSNLMGGGRFNYHCSGLGLHPRTGMYKVVQAFFRFQSMEPAETKMGMEVFTIGGGGGGAGWREITSDPPYPAKRFQIGVSVCGYMFWRFSERHTKLERGILHLSLEEEEFGITGLPDELDTDNSFLLDELLGRDLCVSASNTSCTMLNIWTLPVADESLCTLWQWRYCIEYPWSLCSVMALPPFSDEIILLRGNNICRYDLATSKLKILCRLDRTRYQGEGARKSELFSAMPFIESLVRITY

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Gene Transcript Chromosome Start End Strand Source
OsNaBo_02g0016740 OsNaBo_02g0016740.01 Chr02 17629184 17635014 + NAM
CDS seq

atggaagacatggttacggagatcctggtgcggctgcctgtcaagtccctcctgcggttcaagcccgcgtgcagagcctggcaagccatcatcgacgaccccgtgttcatccgagctcacctgcgccgctccgcctccaggtgggagcagagccacagcttcatcatcaaccctcacagcatggtcagagtcccttgggatcggtggccagtcccctccaatcgctaccgcttccatcagtggcagctgcaacgcggcaccaccaccacctctcccagaaacaataatgtggcgacgttcttgcatgccaaggacttatctgacgatcagcagttctacacaaccgagttcacgcaccgcgatggcctggtgttttctaccaccaccaccagcctccacgtcttcaacccagccaccagggatgccatcacgctgcctaccagttccaggtccaatctaatgggaggtggaagattcaactaccactgctcgggtctaggcctgcatccacgcaccggcatgtacaaggtagtccaggctttcttccggttccagtcaatggaaccagctgaaacaaaaatggggatggaggtgttcaccattggaggaggaggtggtggtgccggttggagggagatcacgagtgatcctccatacccagccaagagattccagatcggcgtgtctgtctgcggctacatgttctggcgcttttccgagaggcatacgaagctcgagcgcggcatcctccatcttagcctggaggaagaggagttcggcatcaccggcctgccagatgagctggacactgataacagcttcttgctggacgagctactcggccgggatctgtgtgtgtcggcgtctaacaccagctgcacgatgctgaacatatggacgctgcctgtagcggacgagagcctgtgcacgctgtggcaatggcgttactgcatcgagtacccctggagtctttgctctgtgatggctcttcctcctttcagcgatgaaatcatcttgttgcgaggtaataatatatgtcgctatgatctggcgacttctaagctcaagatactatgtagattggatcgcacgaggtaccagggggagggggcacggaagtcggaattgttcagtgccatgccgttcatcgaaagtctcgttcggatcacttattaa

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Protein seq

MEDMVTEILVRLPVKSLLRFKPACRAWQAIIDDPVFIRAHLRRSASRWEQSHSFIINPHSMVRVPWDRWPVPSNRYRFHQWQLQRGTTTTSPRNNNVATFLHAKDLSDDQQFYTTEFTHRDGLVFSTTTTSLHVFNPATRDAITLPTSSRSNLMGGGRFNYHCSGLGLHPRTGMYKVVQAFFRFQSMEPAETKMGMEVFTIGGGGGGAGWREITSDPPYPAKRFQIGVSVCGYMFWRFSERHTKLERGILHLSLEEEEFGITGLPDELDTDNSFLLDELLGRDLCVSASNTSCTMLNIWTLPVADESLCTLWQWRYCIEYPWSLCSVMALPPFSDEIILLRGNNICRYDLATSKLKILCRLDRTRYQGEGARKSELFSAMPFIESLVRITY

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Gene Transcript Chromosome Start End Strand Source
OsNaBo_02g0016740 OsNaBo_02g0016740.03 Chr02 17632369 17635014 + NAM
CDS seq

atggaagacatggttacggagatcctggtgcggctgcctgtcaagtccctcctgcggttcaagcccgcgtgcagagcctggcaagccatcatcgacgaccccgtgttcatccgagctcacctgcgccgctccgcctccaggtgggagcagagccacagcttcatcatcaaccctcacagcatggtcagagtcccttgggatcggtggccagtcccctccaatcgctaccgcttccatcagtggcagctgcaacgcggcaccaccaccacctctcccagaaacaataatgtggcgacgttcttgcatgccaaggacttatctgacgatcagcagttctacacaaccgagttcacgcaccgcgatggcctggtgttttctaccaccaccaccagcctccacgtcttcaacccagccaccagggatgccatcacgctgcctaccagttccaggtccaatctaatgggaggtggaagattcaactaccactgctcgggtctaggcctgcatccacgcaccggcatgtacaaggtagtccaggctttcttccggttccagtcaatggaaccagctgaaacaaaaatggggatggaggtgttcaccattggaggaggaggtggtggtgccggttggagggagatcacgagtgatcctccatacccagccaagagattccagatcggcgtgtctgtctgcggctacatgttctggcgcttttccgagaggcatacgaagctcgagcgcggcatcctccatcttagcctggaggaagaggagttcggcatcaccggcctgccagatgagctggacactgataacagcttcttgctggacgagctactcggccgggatctgtgtgtgtcggcgtctaacaccagctgcacgatgctgaacatatggacgctgcctgtagcggacgagagcctgtgcacgctgtggcaatggcgttactgcatcgagtacccctggagtctttgctctgtgatggctcttcctcctttcagcgatgaaatcatcttgttgcgaggtaataatatatgtcgctatgatctggcgacttctaagctcaagatactatgtagattggatcgcacgaggtaccagggggagggggcacggaagtcggaattgttcagtgccatgccgttcatcgaaagtctcgttcggatcacttattaa

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Protein seq

MEDMVTEILVRLPVKSLLRFKPACRAWQAIIDDPVFIRAHLRRSASRWEQSHSFIINPHSMVRVPWDRWPVPSNRYRFHQWQLQRGTTTTSPRNNNVATFLHAKDLSDDQQFYTTEFTHRDGLVFSTTTTSLHVFNPATRDAITLPTSSRSNLMGGGRFNYHCSGLGLHPRTGMYKVVQAFFRFQSMEPAETKMGMEVFTIGGGGGGAGWREITSDPPYPAKRFQIGVSVCGYMFWRFSERHTKLERGILHLSLEEEEFGITGLPDELDTDNSFLLDELLGRDLCVSASNTSCTMLNIWTLPVADESLCTLWQWRYCIEYPWSLCSVMALPPFSDEIILLRGNNICRYDLATSKLKILCRLDRTRYQGEGARKSELFSAMPFIESLVRITY

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Gene Transcript Chromosome Start End Strand Source
OsNaBo_02g0016740 OsNaBo_02g0016740.04 Chr02 17629548 17629760 + IsoSeq
CDS seq

ggtgcgtgcacggcggtgctgatgccgtgctcgcatcacatgatggcagcaatttgccaaatcggtaagtcatcaatccaattcgcttgccgaggttctaattttggggatttttcg

Protein seq

GACTAVLMPCSHHMMAAICQIGKSSIQFACRGSNFGDFS

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
RI Chr02 17632369 17635014 + OsNaBo_02g0016740.03 OsNaBo_02g0016740.03,OsNaBo_02g0016740.02 All

Expression

Leaf Root Panicle
FPKM 3.795384 25.719503 11.213490

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_02g0474000 RBH 1.774810 1.569194 2.945289
Nipponbare | IRGSP 1.0 | MSU LOC_Os02g27400 RBH 1.190083 1.029894 0.755831
Nipponbare | IRGSP 1.0 | RAP-db Os02g0474000 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_02g0016860 RBH 2.193114 2.426846 11.556305
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_02g0016970 RBH 0.572420 2.524544 4.199785
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_02g0016870 RBH 2.539353 8.466831 13.383122
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_02g0016740 RBH 0.395002 0.194679 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_02g0016660 RBH 9.776774 15.805243 31.321560
Minghui 63 | MH63RS3 | HZAU OsMH63_02G0269900 RBH 4.617773 13.490216 26.0955745
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_02g0016420 RBH 0.300092 0.871008 2.155801
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_02G0291000 RBH 17.5057705 88.479702 34.999449
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_02g0016980 RBH 0.171072 0.566916 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_02g0016530 RBH 1.195912 12.452439 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_02g0017070 RBH 1.217172 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_02g0016850 RBH 1.488894 2.054478 2.050351
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_02g0016600 RBH 0.660928 9.183027 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_02G017030 RBH 0.472170 5.532261 4.980724
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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