Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0317600 | OGI:07010130 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:12620372-12624397 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCATGTACTCCTGTTTCCCCCAATTCCTTCCCACCACCGGCCACCTCTAGCGTATCGCCTGGTCCTTCCATGCCATGCCTGCTGGTCCCCCAACCCCCCATCTCCAAGCTCTTTCTCTCCCTGCTGGCTCCCCATCTTCACCTCGTGGCGGCATCTGGTCATGCACCTCGGCCACAGCGCAGCTCGAGCAGTCGACGGGGTGGAGTGGCCTCGGCAGCGGCACGGATTGGACTCGGCGACGGTGGTATACTTCCGGTCAGTCTCTCGTCCGGATCTACTTCCGACAAGCCTCTCGTCCGGATCTAGGGCCTTGCAGCGGTAATCACTGGATCTGGGGTCTCCGCGGCTGGATGCCCTCTCCTGCTTCGTCGTTGCGGTGGCAATCACCAGATCTGGGGCCTCTGCGCCTGGATTCGGTTGATGGGAGTTTTGGAGCGAGGATGGAGGTGTGTTTGAGAATAATCACCCCTCGTCTGCTGACTCGTCCCCATCGCCCGACCGGTCCACGGGGTTCCAGGCAACATGCATCGCGGCGTCTCGGCATGGAGGGTGCACAGTGTTGGGGTTCAGCTACGGCAGCTTCGTGGTGTTCGTTGTAAGTTTGTACTAACTATTAGTAATCTTGTCAAATTAAGTTCGAACTAATTAAGGTCGTCCTTTCCACTACTTAATTGAGAATACTTGAACTCAATTCTTATTCTGCTTATAAAACACATTAACTAATTAAGCTCATGTAAAGCATGCACAGCGATGGAACTTTTTGTGAGCAGAAGAAGCAACTTGTTTTTCCCTGTAGACTTTTGAATTGACACAATGTATTCTGTCAAGGTACTGAACCACATCCTTTTGTAGGCCTGCTGTGGGGTGCTTTGTGTTGTGGATAGTGGGCGTGGACCAGAAGCTGATTATGTGTTTTCACCGCGCGAAATTGGTAAGCTCTACGGACTCTTGAACTACTATAAGTTATTTAGATAATCATGAAAAGATACATGTCTGATTAATCAGGTAGTCAATTATCTATTTCTTTGAGGTGATACATAGAAGCATGTCTCTTACACCTTGAGGCATACTGCTCTCACATTCATTCTCTTGGTACGCCAATAGTTCTACTAAGAAATGCTTCCTTAGCTCATATCCATCCTGTATATGCATTTATTTATGTAAGCGAACAAGGTTAGCACTGTATGTGTAAAAAGGTAGTAGCATTTAAATAGTCAATGCTAAGTGTCACGATACTTGCCTTTATAATTGGTAACTGCAATTCTTCATCATTCCATTTGCGCATGAAGAGGGACACAAGATAACCAGATAGTTCGCTAAGAAAAATTTAATTGTTAATTAATTTTGTTTTAGGGAAATAAATTAACTGGTTGTACAATGGAGTTTAAAAGAAAGTTTACCCGTTGTTAATTGGAACATTTGGTAGAATTATTTGACGCCATAGGTTGATATCCTCGTTCCATCTTGACCCAAGGCATGCTTTTGCCATTGCTTTTGGCAAGTGTTTGGCAATCCATAGTAGTTTTTTGACATATCTTGCATTTGGGTTGTTCTCATAAATTGGTTCAAGCGGAGTCGGGTCTAATATATAGACGATTCTGGTATCTTGGTCCAATACGATCAAAATGAAAAATTTATAGAATTCTATTGGCATAAGAATCTGTAAAAGCTAACTGTTAGGATAGAAAAAAATCATGGCCATGATGAGCAAATGGAAGAGAACTTACCAATCTGCATTTTGAAATATTGTAGTCAATCCCAGGCCAATTACAAACTGACTTTGCTAGCCGTTCAGTGTCGAGCTTTTGACGAAAGTTTGGGTGTTGTCCAAAATTGGTAGTCATCTTTGTATATAATTGTGCAAAAATGATATACAACATGAGACAAAGGGGATAATACATGTGATTATAAAGGCATACTCAAAATTGCAAAACGGAATAATACACGTGATTGTAAAAACATACCCAAAATTGCATGTCTAGATAGTGTTTTGATATTGTTCCCTTTATCTTTTTCACCATTTGGATGTCGTCGTATACATGAATCTGTGAATAACATCACATTAGAAGAGAGCGACATATGTAAACATGTATGGTAACAAAACATGATGTTGAAGGCAAAAATATATGAAATACTAACCTGGGTTATTGTCATTGTTGTCGTTGTTTTTGCGATTACGACGAGCCTTCAGCACATCTTCCAGGTTAACACCAAACTTTGGTATATCGGTATGCCAACCCAATTCACCTCTAGGAAAGAATAGTGGATAAGACAATGGATCATAGCATCCATAGTACGACCGGATGCCTTCTATTTCATTGTTTCATTGTTGTTCCCTTGTAGGATTACACTCTTGTCAAATGTCTTTCGTCGCTCATTTCCCTCGACCCAAACTGCAGCCACCTCTGAAGTTATTGGCGCGTTATACGTCCTCTGATCCAACCATTGGTCAAGGTTCAATATCACACGGTAGTCCTCGAGATTCTCGGCTTGCCCCAAACTCCTAAACTGCTCAGAGTATGGATTACCACGTAGAATGTTAGTTATAGTGCTGATTACTTTTTGATCTTGTTCGTATAGATCTGGCCGACAATGACGGTACCGATGCTCTAGGGTAGGATCATCATCGTAAAAGTACAATTCCAGACGCTTAGGGTTTGAACCATCAGTACCGAATGAACGTATATTGTGATACATCTGGCCATGAGCTCAAAACGTGTAAATACCACTATTCCTGATGTCAGTTATCTCTCTGTCAAGGTGACAGTAAAGAGATGTGAATGAGAAATGTCCATTGAAAAATCTTATGTTGTTGCGGAAATGTTGGGCATCTGAATCTTCGCTCGTCCACAGTCTCGTGAGTTCAGGAGGTGTGTCTTGATTGGCTAGTTTGATTTGTCCACTTCGGCAACAGAAGCCCTTTGACTCATACTCAAACTTCTTTTTGCACCACAAAATCCACAATTTTCTACGGGTTTCAGCATATGAGTGCTTTGTGGTAAGTTGCTGTACACGATCTTGTCTAGATCAGGGATGCTAGGGCTCTCAGTGATGGCATCGACAACATCTATGATTTGTATGTCCTGATCTTCCTCCCAACCTGGAAAGTTTTAGTGCCAAGATATAAGTTTACGTTTGACATGATGGTGGCGAACAGCGACAAAATTACCTTGATCATCAAGCATGTCGCTTTCCTCATCAGTATCATCGTCAAATATGACCTCACCATCGGCTGCATAAAAAATCAGTACGTGCATATGTAGATTAAGGCCCTAACTGTATCAAATCAAAATAAAATCAAATAGAGATGACAATGTTACCATCATCATTGATGTGACTGTGATGGAGGCTCTACACCATTGGTTCCTTTAGATATTGTAGACATGTTATTGTCTATTGAAAGAAGATGGTTAGTAGTACACCAGGATACATTGCAGTACAACATAAAGTAAGTGTATATAGCTAGGATCCTCACCAATGTTCATTACGCTTGGTTGATTAGAAGGGTCTACGCCACTGACTGGTTGGGCGCTTATGGAAGGATCTTCTAATTCTAACAAGGCAGAAGTACTTTTGTCTCGTCTAACCATGAAGCTTTCGTTGCGACGTGCCATCAATGCATGTCTTTCTCCATGCGTTACACATTTTTTTTGGTGATCTTGTTGGGACAGGGGGTGACATATCCGTCGTGATATACCCAGGGTTCTCCATTGCTATGGAATATTTACTTGGATTGTTGCGCCGTGATGCACGCTTATCTTTGATCCGTTCTATCACAACTTGTTTTTTGTTCAGTTCCATATTTCTATATCTCATCCTTTCACGTGTGTGTTTTTCTTGGATAACTTTTGGGTCTACTGCTGGGTCTTCTTGTTCGGAATGTGCAGTATGCAATGACCCTGGTTGATCACCCCGAAAAGTGATGCAATGTAGTTCATCAGCATTTGCACGGGCCATTGACTCCTTTTTGAGCTTATAGGCTTCACGACGCTTTGCTAGAGTTTCCTGCTTTTCTTTGTCTGTCAT
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| CDS seq | ATGACAGACAAAGAAAAGCAGGAAACTCTAGCAAAGCGTCGTGAAGCCTATAAGCTCAAAAAGGAGTCAATGGCCCGTGCAAATGCTGATGAACTACATTGCATCACTTTTCGGGGTGATCAACCAGGGTCATTGCATACTGCACATTCCGAACAAGAAGACCCAGCAGTAGACCCAAAAGTTATCCAAGAAAAACACACACGTGAAAGGATGAGATATAGAAATATGGAACTGAACAAAAAACAAGTTGTGATAGAACGGATCAAAGATAAGCGTGCATCACGGCGCAACAATCCAACCGATGGTGAGGTCATATTTGACGATGATACTGATGAGGAAAGCGACATGCTTGATGATCAAGGCGCAGAGGCCCCAGATCTGGTGATTGCCACCGCAACGACGAAGCAGGAGAGGGCATCCAGCCGCGGAGACCCCAGATCCAGTGATTACCGCTGCAAGGCCCTAGATCCGGACGAGAGGCTTGTCGGAAGTAGATCCGGACGAGAGACTGACCGGAAGTATACCACCGTCGCCGAGTCCAATCCGTGCCGCTGCCGAGGCCACTCCACCCCGTCGACTGCTCGAGCTGCGCTGTGGCCGAGGTGCATGACCAGATGCCGCCACGAGGTGAAGATGGGGAGCCAGCAGGGAGAGAAAGAGCTTGGAGATGGGGGGTTGGGGGACCAGCAGGCATGGCATGGAAGGACCAGGCGATACGCTAGAGGTGGCCGGTGGTGGGAAGGAATTGGGGGAAACAGGAGTACATGA
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| Protein seq | MTDKEKQETLAKRREAYKLKKESMARANADELHCITFRGDQPGSLHTAHSEQEDPAVDPKVIQEKHTRERMRYRNMELNKKQVVIERIKDKRASRRNNPTDGEVIFDDDTDEESDMLDDQGAEAPDLVIATATTKQERASSRGDPRSSDYRCKALDPDERLVGSRSGRETDRKYTTVAESNPCRCRGHSTPSTARAALWPRCMTRCRHEVKMGSQQGEKELGDGGLGDQQAWHGRTRRYARGGRWWEGIGGNRST |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0317600 | OsNip_02t0317600-00 | Chr02 | 12620372 | 12624397 | - | RAP2018-11-26 | ||
| CDS seq | ATGACAGACAAAGAAAAGCAGGAAACTCTAGCAAAGCGTCGTGAAGCCTATAAGCTCAAAAAGGAGTCAATGGCCCGTGCAAATGCTGATGAACTACATTGCATCACTTTTCGGGGTGATCAACCAGGGTCATTGCATACTGCACATTCCGAACAAGAAGACCCAGCAGTAGACCCAAAAGTTATCCAAGAAAAACACACACGTGAAAGGATGAGATATAGAAATATGGAACTGAACAAAAAACAAGTTGTGATAGAACGGATCAAAGATAAGCGTGCATCACGGCGCAACAATCCAACCGATGGTGAGGTCATATTTGACGATGATACTGATGAGGAAAGCGACATGCTTGATGATCAAGGCGCAGAGGCCCCAGATCTGGTGATTGCCACCGCAACGACGAAGCAGGAGAGGGCATCCAGCCGCGGAGACCCCAGATCCAGTGATTACCGCTGCAAGGCCCTAGATCCGGACGAGAGGCTTGTCGGAAGTAGATCCGGACGAGAGACTGACCGGAAGTATACCACCGTCGCCGAGTCCAATCCGTGCCGCTGCCGAGGCCACTCCACCCCGTCGACTGCTCGAGCTGCGCTGTGGCCGAGGTGCATGACCAGATGCCGCCACGAGGTGAAGATGGGGAGCCAGCAGGGAGAGAAAGAGCTTGGAGATGGGGGGTTGGGGGACCAGCAGGCATGGCATGGAAGGACCAGGCGATACGCTAGAGGTGGCCGGTGGTGGGAAGGAATTGGGGGAAACAGGAGTACATGA
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| Protein seq | MTDKEKQETLAKRREAYKLKKESMARANADELHCITFRGDQPGSLHTAHSEQEDPAVDPKVIQEKHTRERMRYRNMELNKKQVVIERIKDKRASRRNNPTDGEVIFDDDTDEESDMLDDQGAEAPDLVIATATTKQERASSRGDPRSSDYRCKALDPDERLVGSRSGRETDRKYTTVAESNPCRCRGHSTPSTARAALWPRCMTRCRHEVKMGSQQGEKELGDGGLGDQQAWHGRTRRYARGGRWWEGIGGNRST
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.688752 | 0.821755 | 0.184020 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0317600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0016250 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0016380 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0016280 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0016180 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0013980 | RBH | 0.059214 | 0.261092 | 0.170730 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0014530 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0014080 | RBH | 0.081675 | 13.421832 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0014620 | RBH | 1.154542 | 11.835513 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G014540 | RBH | 0.364358 | 1.031822 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
