Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_02g0014620 | OGI:07010130 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr02:12746243-12750375 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcatgtactcctgtttcccccaattccttcccaccaccggccacctctagcgtattgcctggtccttccatgccatgcctgctggtcccccaaccccccatctccaagctctttctctccctgctggctccccatcttcacctcgtggcggcatctggtcatgcacctcggccacagcgcagctcgagcagtcgacGgggtggagtggcctcggcagcggcacggattggactcggcgacggtggtatacttccggtcagtctctcgtccggatctacttccgacaagcctctcgtccggatctagggccttgcagcggtaatcactggatctggggtctccgcggctggatgccctctcctgcttcgtcgttgcggtggcaatcaccagatctggggcctctgcgcctggattcggttgatgggagttttggagcgaggatggaggtgtgtttgagaataatcacccctcgtctgctgactcgtccccatcgcccgaccggtccacggggttccaggcagcatgcatcgcggcgtctcggcatggagggtgcacagtgttggggttcagctacggcagcttcgtggtgttcgttgtaagtttgtactaactattagtaatcttgtcaaattaagttcgaactaattaaggtcgtcctttccactacttaattgagaatacttgaactcaattcttattctgcttataaaacacattaactaattaagctcatgtaaagcatgcacagcgatggaactttttgtgagcagaagaagcaacttgtttttccctgtagacttttgaattgacacaatgtattctgtcaaggtactgaaccacatccttttgtaggcctgctgtggggtgctttgtgttgtggatagtgggcgtggaccagaagctgattatgtgttttcaccgtgcgaaattggtaagctctacggactcttgaactactataagttatttagataatcatgaaaagatacatgtctgattaatcaggtagtcaattatctatttctttgaggtgatacatagaagcatgtctcttacaccttgaggcatactgctctcacattcattctcttggtacgccaatagttctactaagaaatgcttccttagctcatatccatcctgtatatgcatttatttatgtaagcgaacaaggttagcattgtatgtgtaaaaaggtagtagcatttaaatagtcaatgctaagtgtcacgatacttgcctttataattggtaactgcaattcttcatcattccatttgcgcatgaagagggacacaagataaccagatagttcgctaagaaaaatttaattgttaattaattttgttttagggaaataaattaactggttgtacaatggagtttaaaagaaagtttacccgttgttaattggaacatttggtagaattatttgacgccataggttgatatcctcgttccatcttgacccaaggcatgcttttgccattgcttttggcaagtgtttggcaatccatagtagttttttgacatatcttgcatttgggttgttctcataaattggttcaagcggagtcgggtctaatatatagacgattttggcatcttggtccaatacgatcaaaatgaaaaatttatagaattctattggcataagaatctgtaaaagctaactgttaggatagaaaaaaatcatggccatgatgagcaaatggaagagaacttaccaatctgcattttgaaatattgtagtcaatcccaggccaattacaaactgactttgctagccgttcagtgtcgagcttttgacgaaagtttgggtgttgtccaaaattggtagtcatctttgtatataattgtgcaaaaatgatatacaacatgagacaaaggggataatacatgtgattataaaggcatactcaaaattgcaaaacggaataatacacgtgattgtaaaaacatacccaaaattgcatgtctagatagtgttttgatattgttccctttatctttttcaccatttggatgtcgtcgtatacatgaatctgtgaataacatcacattagaagagagcgacatatgtaaacatgtatggtaacaaaacatgatgttgaaggcaaaaatatatgaaatactaacctgggttattgtcattgttgtcgttgtttttgcgattacgacgagccttcagcacatcttccatgttaacaccaaactttggtatatcggtatgccaacccaattcacctctaggaaagaatagtggataagacaatggatcatagcatccatagtacgaccggatgccttctatttcattgtttcattgttgttcccttgtaggattacactcttgtcaaatgtctttcgtcgctcatttccctcgacccaaactgcagccacatctgaagttattggcgcgttatacgtcctctgatccaaccattggtcaaggttcaatatcacacggtagtcctcgagattctcggcttgccccaaactcctaaactgctcagagtatggattaccacgtagaatgttagttatagtgctgattactttttgatcttgttcgtatagatctggccgacaatgacggtaccgatgctctagggtaggatcatcatcgtaaaagtacaattccagatgcttaGggtttgaaccatcagtaccgaatgaacgtatattgtgatacatctggccatgagctcaaaacgtgtaaataccactattcctgatgtcagttgtctctctgtcaaggtgacagtaaagagatgtgaatgagaaatgtccattgaaaaatcttatgttgttgcggaaatgttgggcatctgaatcttcgctcgtccacagtctcgtgagttcaggaggtgtgtcttgattggctagtttgatttgtccacttcggcaacagaagccctttgactcatactcaaacttctttttgcaccacaaaatccacaattttctacgggtttcagcatatgagtgctttgtggtaagttgctgtacacgatctcgtctagatcagggatgctagggCTctcagtgatggcatcgacaacatctatgatttgtatgtcctgatcttcctcccaacctggaaagttttagtgccaagatataagtttacgtttgacatgatggtggcgaacagcgacaaaattactttgatcatcaagcatgtcgctttcctcatcagtatcatcgtcaaatatgacctcaccatcggctgcataaaaaatcagtacgtgcatatgtaaactaaggccctaactgtatcaaatcaaaataaaatcaaatagagatgacaatgttaccatcatcattgatgtgactgtgatggaggctctacaccattggttcctttagatattgtagacatgttattgtctattgaaagaagatggttagtagtacaccaggatacattgcagtacaacataaagtaagtgtatatagctaggatcctcaccaatgttcattacgcttggttgattagaagggtctacgccactgactggttgggcgcttatggaaggatcttctaattctaacaaggcagaagtacttttgtctcgtctaaccatgaagctttcgttgcgacgtgccatcaatgcatgtctttctccatgcgttacacaTtttttttggtgatcttgttgggacagggggtgacatatccgtcgtgatatacccagggttctccattgctatggaatatttacttggattgttgcgccgtgatgcacgcttatctttgatccgttctatcacaacttgttttttgttcagttccatatttctatatctcatcctttcacgtgtgtgTttttcttggataacttttgggtctactgctgggtcttcttgttcggaatgtgcagtatgcaatgaccctggttgatcaccccgaaaagtgatgcaatgtagttcatcagcatttgcacgggccattgactcctttttgagcttataggcttcacgacgctttgctagagtttcctgcttttctttgtctgtcatccgcgcataccgctccttatctctttgtcttcttcttacattaggatccaagagtggggatggtgatgcagatggcgtggtaccagcatcaagcatgtgtgatggag
More
|
||||||||||
| CDS seq | atgcttgatgctggtaccacgccatctgcatcaccatccccactcttggatcctaatgtaagaagaagacaaagagataaggagcggtatgcgcggatgacagacaaagaaaagcaggaaactctagcaaagcgtcgtgaagcctataagctcaaaaaggagtcaatggcccgtgcaaatgctgatgaactacattgcatcacttttcggggtgatcaaccagggtcattgcatactgcacattccgaacaagaagacccagcagtagacccaaaagttatccaagaaaaAcacacacgtgaaaggatgagatatagaaatatggaactgaacaaaaaacaagttgtgatagaacggatcaaagataagcgtgcatcacggcgcaacaatccaaccgatggtgaggtcatatttgacgatgatactgatgaggaaagcgacatgcttgatgatcaaaacccgactccgcttgaaccaatttatgagaacaacccaaatgcaagatatgtcaaaaaactactatggattgccaaacacttgccaaaagcaatggcaaaagcatgccttgggtcaagatggaacgaggatatcaacctatggcgtcaaataattctaccaaatgttccaattaacaacggcgaactatctggcgcagaggccccagatctggtgattgccaccgcaacgacgaagcaggagagggcatccagccgcggagaccccagatccagtgattaccgctgcaaggccctagatccggacgagaggcttgtcggaagtagatccggacgagagactgaccggaagtataccaccgtcgccgagtccaatccgtgccgctgccgaggccactccacccCgtcgactgctcgagctgcgctgtggccgaggtgcatgaccagatgccgccacgaggtgaagatggggagccagcagggagagaaagagcttggagatggggggttgggggaccagcaggcatggcatggaaggaccaggcaatacgctagaggtggccggtggtgggaaggaattgggggaaacaggagtacatga
More
|
||||||||||
| Protein seq | MLDAGTTPSASPSPLLDPNVRRRQRDKERYARMTDKEKQETLAKRREAYKLKKESMARANADELHCITFRGDQPGSLHTAHSEQEDPAVDPKVIQEKHTRERMRYRNMELNKKQVVIERIKDKRASRRNNPTDGEVIFDDDTDEESDMLDDQNPTPLEPIYENNPNARYVKKLLWIAKHLPKAMAKACLGSRWNEDINLWRQIILPNVPINNGELSGAEAPDLVIATATTKQERASSRGDPRSSDYRCKALDPDERLVGSRSGRETDRKYTTVAESNPCRCRGHSTPSTARAALWPRCMTRCRHEVKMGSQQGEKELGDGGLGDQQAWHGRTRQYARGGRWWEGIGGNRST |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_02g0014620 | OsGoSa_02g0014620.01 | Chr02 | 12746243 | 12750375 | - | NAM | ||
| CDS seq | atgcttgatgctggtaccacgccatctgcatcaccatccccactcttggatcctaatgtaagaagaagacaaagagataaggagcggtatgcgcggatgacagacaaagaaaagcaggaaactctagcaaagcgtcgtgaagcctataagctcaaaaaggagtcaatggcccgtgcaaatgctgatgaactacattgcatcacttttcggggtgatcaaccagggtcattgcatactgcacattccgaacaagaagacccagcagtagacccaaaagttatccaagaaaaAcacacacgtgaaaggatgagatatagaaatatggaactgaacaaaaaacaagttgtgatagaacggatcaaagataagcgtgcatcacggcgcaacaatccaaccgatggtgaggtcatatttgacgatgatactgatgaggaaagcgacatgcttgatgatcaaaacccgactccgcttgaaccaatttatgagaacaacccaaatgcaagatatgtcaaaaaactactatggattgccaaacacttgccaaaagcaatggcaaaagcatgccttgggtcaagatggaacgaggatatcaacctatggcgtcaaataattctaccaaatgttccaattaacaacggcgaactatctggcgcagaggccccagatctggtgattgccaccgcaacgacgaagcaggagagggcatccagccgcggagaccccagatccagtgattaccgctgcaaggccctagatccggacgagaggcttgtcggaagtagatccggacgagagactgaccggaagtataccaccgtcgccgagtccaatccgtgccgctgccgaggccactccacccCgtcgactgctcgagctgcgctgtggccgaggtgcatgaccagatgccgccacgaggtgaagatggggagccagcagggagagaaagagcttggagatggggggttgggggaccagcaggcatggcatggaaggaccaggcaatacgctagaggtggccggtggtgggaaggaattgggggaaacaggagtacatga
More
|
|||||||
| Protein seq | MLDAGTTPSASPSPLLDPNVRRRQRDKERYARMTDKEKQETLAKRREAYKLKKESMARANADELHCITFRGDQPGSLHTAHSEQEDPAVDPKVIQEKHTRERMRYRNMELNKKQVVIERIKDKRASRRNNPTDGEVIFDDDTDEESDMLDDQNPTPLEPIYENNPNARYVKKLLWIAKHLPKAMAKACLGSRWNEDINLWRQIILPNVPINNGELSGAEAPDLVIATATTKQERASSRGDPRSSDYRCKALDPDERLVGSRSGRETDRKYTTVAESNPCRCRGHSTPSTARAALWPRCMTRCRHEVKMGSQQGEKELGDGGLGDQQAWHGRTRQYARGGRWWEGIGGNRST
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.154542 | 11.835513 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0317600 | RBH | 0.688752 | 0.821755 | 0.184020 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g22580 | RBH | 3.398391 | 3.051788 | 0.895832 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0317600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0015020 | RBH | 0.000000 | 0.000000 | 2.852060 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0016380 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0016280 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0016180 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0016930 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0013980 | RBH | 0.059214 | 0.261092 | 0.170730 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0014530 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0014080 | RBH | 0.081675 | 13.421832 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0017150 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0016850 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G014540 | RBH | 0.364358 | 1.031822 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0015020 | RBH | 1.879290 | 15.905820 | 3.792721 |
