Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNip_02g0193000 OGI:02015420 | 16/16 Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) Chr02:5179724-5182004
Gene Symbol OsLysM-RLK1, OsLYK4, OsNFR5/OsRLK2, OsNFR5, NFR5, OsRLK2, RLK2
DNA seq

AATTACAAGGCCTCGCCGGAGACGGAGACGGAGACCAATCCGCCCCCGACCTCGCCGATGGCGGAAACTCCACGCCGAATCCGCCGCGGCGGCGCCGGGCTCTCGCTCGTCGTCGTCGCCCTCCTCCTCGCCGTCGCGGCGAGGGCGCAGCAGGAGTACGAGGCGAACCAGCAGAACGCCTGCTACGCCACCAACGCGAGCTCCACCCTCGGCTACACCTGCAACGCCACCTCCGCCTCCGCCGCCGCCGCGGCGCCCTGCGACGCGTACCTGGTGTTCCGCTCCTCCCCGCCCCTCTACGCCTCCGCTGTCTCCATCTCCTACCTCCTCAACGTCGCCGCCGCCGCCGTCGCCGACTCCAACGCCGTCGACCCGGTCGCCCCCGTCGCCGCCGACCGCCTCGTGCTCGCGCCCGTGCCGTGCGGCTGCTCCCCGGGCGGCTACTACCAGCACAACGCCTCCCACACCATCCGCGACACCGGCGTCGAGACCTACTTCATCATCGCCAACCTCACCTACCAGGGCCTCTCGACGTGCCAGGCTCTCATCGCGCAGAATCCCCTCCACGACAGCCGCGGCCTCGTCGCCGGCGACAACCTCACCGTCCCGCTCCGCTGCGCCTGCCCCTCGCCGCCGCAGGCCGCCGCGGGCGTCAAGCACATGGTCACCTACCTCGTCACCTGGGGCGACACCGTCTCCGCCATCGCCGCGCGGTTCCGCGTCGACGCGCAGGAGGTGCTCGACGCCAACACGCTCACCGAGAGCTCCATCATATACCCCTTCACCACGCTGCTGGTCCCGCTCAAGAACGCGCCCACGCCGGACATGCTCGCGCCGCCGGCCCAGGCGCCGCCGCCCCCCGCGCCCGCGCCGCCGCGGGCGCAGCCGCCGCCTGGTGGGTCGGGCAGCGGGAAGGGAGTCGCCGTTGGGGTAGGCGTCGGTTGCGGCGTTCTTGCGTTGGCGGGTGTCTTTGGCTTGCTGTTCTTCTGTCTCCGGCGGCGACGCGGCGTTGGGGAAGAAAGTGTTCGTCCGGGGAAGGTGGTCGGCGACGTGTCCTCTTCGGCGGAGTACGGCGCCCTGGCATCGGGGAAGCAGACGACGACGGCAACCTCGATGTCGTCGCTGTCCGCGGCGAGGTCGCTGATGGCGAGCGAAGTGCGCGAGGCGTTGGAGTCGCTAACGGTGTACAAGTACTCGGAGCTGGAGAAGGCCACGGCGGGGTTCTCGGAGGAGCGGAGGGTGCCCGGCACCGCCGTGTACCGCGGCGTGTTCAACGGCGATGCGGCGGCGGTGAAGCGTGTTTCCGGCGACGTGAGCGGCGAGGTCGGCATCCTGAAGCGCGTGAACCACTGCAGCCTGATCCGCCTCTCCGGCCTCTGCGTCCACCGCGGCGACACCTACCTCGTCTTCGAGTACGCCGAGAACGGCGCGCTCAGCGACTGGCTCCACGGCGGCGACGCCGCCACCGGCGTCCTGGGGTGGAGGCAGCGCGTGCAGGTGGCGTTCGACGTCGCCGACGGGCTCAACTACCTCCACCACTACACCAACCCGCCATGTGTGCACAAGAACATCAAGAGCAGCAACATCCTCCTCGACGCCGACCTCCACGGCAAGATGTCCAGCTTCGGGCTAGCCCGCGCGCTCCCCGCGGGCGACGGCGCCGCCGCCGCCGCCGCGCAGCTGACGCGCCACGTCGTGGGCACCCAGGGCTACCTCTCCCCGGAGTACCTCGAGCACGGCCTCATCACGCCCAAGCTCGACGTGTTCGCCTTCGGCGTCGTCCTCCTCGAGCTCCTCTCCGGCAAGGAGGCGGCGTCCTCCGGCGACGGCGAGAACGGCGAGGCGCTGCTGCTGTGGGAGTCCGCGGCGGAGGCGCTCGTCGACGGCGGCGGCGAGGACGCGGGGAGCAACGTGCGCGCGTTCATGGACCCGCGGCTTGGCGGCGACTACCCGCTCGACCTGGCCATGGCCGTGGCGTCGCTGGCGGCGCGGTGCGTGGCGAGGCAGCCCGCCGCGCGGCCGGCCATGGACGAGGTGTTCGTCTCGCTCGCGGCGGTGTACGGCTCCACGGTGGACTGGAACCCCTCGGATCACGGCAACTCCGGGTCGTCGCTGATTGGGAGGTAGCAAAACGAACCAAATCGGTGGCAAATTCGATTCAAATCGATGCGAAAAGATCGGAATTTTTCAAATTGAGTTTTGAATTTGTAGCTGAAAATAGTATTTGTGTTGCAATTGATGGTGCGAATAAAAACTGTCCTCGAGCAGCAGCGACAACTTG

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CDS seq

TTACAAGGCCTCGCCGGAGACGGAGACGGAGACCAATCCGCCCCCGACCTCGCCGATGGCGGAAACTCCACGCCGAATCCGCCGCGGCGGCGCCGGGCTCTCGCTCGTCGTCGTCGCCCTCCTCCTCGCCGTCGCGGCGAGGGCGCAGCAGGAGTACGAGGCGAACCAGCAGAACGCCTGCTACGCCACCAACGCGAGCTCCACCCTCGGCTACACCTGCAACGCCACCTCCGCCTCCGCCGCCGCCGCGGCGCCCTGCGACGCGTACCTGGTGTTCCGCTCCTCCCCGCCCCTCTACGCCTCCGCTGTCTCCATCTCCTACCTCCTCAACGTCGCCGCCGCCGCCGTCGCCGACTCCAACGCCGTCGACCCGGTCGCCCCCGTCGCCGCCGACCGCCTCGTGCTCGCGCCCGTGCCGTGCGGCTGCTCCCCGGGCGGCTACTACCAGCACAACGCCTCCCACACCATCCGCGACACCGGCGTCGAGACCTACTTCATCATCGCCAACCTCACCTACCAGGGCCTCTCGACGTGCCAGGCTCTCATCGCGCAGAATCCCCTCCACGACAGCCGCGGCCTCGTCGCCGGCGACAACCTCACCGTCCCGCTCCGCTGCGCCTGCCCCTCGCCGCCGCAGGCCGCCGCGGGCGTCAAGCACATGGTCACCTACCTCGTCACCTGGGGCGACACCGTCCGCGGCTTGGCGGCGACTACCCGCTCGACCTGGCCATGGCCGTGGCGTCGCTGGCGGCGCGGTGCGTGGCGAGGCAGCCCGCCGCGCGGCCGGCCATGGACGAGGTGTTCGTCTCGCTCGCGGCGGTGTACGGCTCCACGGTGGACTGGAACCCCTCGGATCACGGCAACTCCGGGTCGTCGCTGATTGGGAGGTAG

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Protein seq

LQGLAGDGDGDQSAPDLADGGNSTPNPPRRRRALARRRRPPPRRRGEGAAGVRGEPAERLLRHQRELHPRLHLQRHLRLRRRRGALRRVPGVPLLPAPLRLRCLHLLPPQRRRRRRRRLQRRRPGRPRRRRPPRARARAVRLLPGRLLPAQRLPHHPRHRRRDLLHHRQPHLPGPLDVPGSHRAESPPRQPRPRRRRQPHRPAPLRLPLAAAGRRGRQAHGHLPRHLGRHRPRLGGDYPLDLAMAVASLAARCVARQPAARPAMDEVFVSLAAVYGSTVDWNPSDHGNSGSSLIGR

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNip_02g0193000 OsNip_02t0193000-01 Chr02 5179724 5182004 + RAP2018-11-26
CDS seq

TTACAAGGCCTCGCCGGAGACGGAGACGGAGACCAATCCGCCCCCGACCTCGCCGATGGCGGAAACTCCACGCCGAATCCGCCGCGGCGGCGCCGGGCTCTCGCTCGTCGTCGTCGCCCTCCTCCTCGCCGTCGCGGCGAGGGCGCAGCAGGAGTACGAGGCGAACCAGCAGAACGCCTGCTACGCCACCAACGCGAGCTCCACCCTCGGCTACACCTGCAACGCCACCTCCGCCTCCGCCGCCGCCGCGGCGCCCTGCGACGCGTACCTGGTGTTCCGCTCCTCCCCGCCCCTCTACGCCTCCGCTGTCTCCATCTCCTACCTCCTCAACGTCGCCGCCGCCGCCGTCGCCGACTCCAACGCCGTCGACCCGGTCGCCCCCGTCGCCGCCGACCGCCTCGTGCTCGCGCCCGTGCCGTGCGGCTGCTCCCCGGGCGGCTACTACCAGCACAACGCCTCCCACACCATCCGCGACACCGGCGTCGAGACCTACTTCATCATCGCCAACCTCACCTACCAGGGCCTCTCGACGTGCCAGGCTCTCATCGCGCAGAATCCCCTCCACGACAGCCGCGGCCTCGTCGCCGGCGACAACCTCACCGTCCCGCTCCGCTGCGCCTGCCCCTCGCCGCCGCAGGCCGCCGCGGGCGTCAAGCACATGGTCACCTACCTCGTCACCTGGGGCGACACCGTCCGCGGCTTGGCGGCGACTACCCGCTCGACCTGGCCATGGCCGTGGCGTCGCTGGCGGCGCGGTGCGTGGCGAGGCAGCCCGCCGCGCGGCCGGCCATGGACGAGGTGTTCGTCTCGCTCGCGGCGGTGTACGGCTCCACGGTGGACTGGAACCCCTCGGATCACGGCAACTCCGGGTCGTCGCTGATTGGGAGGTAG

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Protein seq

LQGLAGDGDGDQSAPDLADGGNSTPNPPRRRRALARRRRPPPRRRGEGAAGVRGEPAERLLRHQRELHPRLHLQRHLRLRRRRGALRRVPGVPLLPAPLRLRCLHLLPPQRRRRRRRRLQRRRPGRPRRRRPPRARARAVRLLPGRLLPAQRLPHHPRHRRRDLLHHRQPHLPGPLDVPGSHRAESPPRQPRPRRRRQPHRPAPLRLPLAAAGRRGRQAHGHLPRHLGRHRPRLGGDYPLDLAMAVASLAARCVARQPAARPAMDEVFVSLAAVYGSTVDWNPSDHGNSGSSLIGR

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.233184 0.0 0.000000

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) NA NA NA NA NA
Nipponbare | IRGSP 1.0 | MSU LOC_Os02g09960 RBH 0.276115 0.283037 0.064330
Nipponbare | IRGSP 1.0 | RAP-db Os02g0193000 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_02g0007000 SBH 0.0 1.101189 0.266138
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_02g0007160 RBH 0.0 1.132687 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_02g0006940 SBH 0.176508 0.0 0.273817
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_02g0006880 SBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_02g0006950 SBH 0.439293 1.688964 1.423530
Minghui 63 | MH63RS3 | HZAU OsMH63_02G0087100 RBH 1.786769 24.934599 0.9392395
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_02g0006890 SBH 0.040602 0.134173 0.154813
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_02G0089800 RBH 2.6378695 28.062851 1.8794965
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_02g0007320 SBH 0.034765 0.049133 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_02g0006930 SBH 0.076542 3.794844 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_02g0007200 SBH 0.0 2.649705 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_02g0007200 SBH 0.0 0.100179 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_02g0006950 SBH 0.043475 1.745700 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_02G007050 SBH 0.116118 0.373239 0.130662
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_02g0007030 SBH 0.594335 1.658854 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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