Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os02g0193000 | OGI:02015420 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr02:5179724-5182004 | ||||||||
| Gene Symbol | OsLysM-RLK1, OsLYK4, OsNFR5/OsRLK2, OsNFR5, NFR5, OsRLK2, RLK2 | ||||||||||
| DNA seq | AATTACAAGGCCTCGCCGGAGACGGAGACGGAGACCAATCCGCCCCCGACCTCGCCGATGGCGGAAACTCCACGCCGAATCCGCCGCGGCGGCGCCGGGCTCTCGCTCGTCGTCGTCGCCCTCCTCCTCGCCGTCGCGGCGAGGGCGCAGCAGGAGTACGAGGCGAACCAGCAGAACGCCTGCTACGCCACCAACGCGAGCTCCACCCTCGGCTACACCTGCAACGCCACCTCCGCCTCCGCCGCCGCCGCGGCGCCCTGCGACGCGTACCTGGTGTTCCGCTCCTCCCCGCCCCTCTACGCCTCCGCTGTCTCCATCTCCTACCTCCTCAACGTCGCCGCCGCCGCCGTCGCCGACTCCAACGCCGTCGACCCGGTCGCCCCCGTCGCCGCCGACCGCCTCGTGCTCGCGCCCGTGCCGTGCGGCTGCTCCCCGGGCGGCTACTACCAGCACAACGCCTCCCACACCATCCGCGACACCGGCGTCGAGACCTACTTCATCATCGCCAACCTCACCTACCAGGGCCTCTCGACGTGCCAGGCTCTCATCGCGCAGAATCCCCTCCACGACAGCCGCGGCCTCGTCGCCGGCGACAACCTCACCGTCCCGCTCCGCTGCGCCTGCCCCTCGCCGCCGCAGGCCGCCGCGGGCGTCAAGCACATGGTCACCTACCTCGTCACCTGGGGCGACACCGTCTCCGCCATCGCCGCGCGGTTCCGCGTCGACGCGCAGGAGGTGCTCGACGCCAACACGCTCACCGAGAGCTCCATCATATACCCCTTCACCACGCTGCTGGTCCCGCTCAAGAACGCGCCCACGCCGGACATGCTCGCGCCGCCGGCCCAGGCGCCGCCGCCCCCCGCGCCCGCGCCGCCGCGGGCGCAGCCGCCGCCTGGTGGGTCGGGCAGCGGGAAGGGAGTCGCCGTTGGGGTAGGCGTCGGTTGCGGCGTTCTTGCGTTGGCGGGTGTCTTTGGCTTGCTGTTCTTCTGTCTCCGGCGGCGACGCGGCGTTGGGGAAGAAAGTGTTCGTCCGGGGAAGGTGGTCGGCGACGTGTCCTCTTCGGCGGAGTACGGCGCCCTGGCATCGGGGAAGCAGACGACGACGGCAACCTCGATGTCGTCGCTGTCCGCGGCGAGGTCGCTGATGGCGAGCGAAGTGCGCGAGGCGTTGGAGTCGCTAACGGTGTACAAGTACTCGGAGCTGGAGAAGGCCACGGCGGGGTTCTCGGAGGAGCGGAGGGTGCCCGGCACCGCCGTGTACCGCGGCGTGTTCAACGGCGATGCGGCGGCGGTGAAGCGTGTTTCCGGCGACGTGAGCGGCGAGGTCGGCATCCTGAAGCGCGTGAACCACTGCAGCCTGATCCGCCTCTCCGGCCTCTGCGTCCACCGCGGCGACACCTACCTCGTCTTCGAGTACGCCGAGAACGGCGCGCTCAGCGACTGGCTCCACGGCGGCGACGCCGCCACCGGCGTCCTGGGGTGGAGGCAGCGCGTGCAGGTGGCGTTCGACGTCGCCGACGGGCTCAACTACCTCCACCACTACACCAACCCGCCATGTGTGCACAAGAACATCAAGAGCAGCAACATCCTCCTCGACGCCGACCTCCACGGCAAGATGTCCAGCTTCGGGCTAGCCCGCGCGCTCCCCGCGGGCGACGGCGCCGCCGCCGCCGCCGCGCAGCTGACGCGCCACGTCGTGGGCACCCAGGGCTACCTCTCCCCGGAGTACCTCGAGCACGGCCTCATCACGCCCAAGCTCGACGTGTTCGCCTTCGGCGTCGTCCTCCTCGAGCTCCTCTCCGGCAAGGAGGCGGCGTCCTCCGGCGACGGCGAGAACGGCGAGGCGCTGCTGCTGTGGGAGTCCGCGGCGGAGGCGCTCGTCGACGGCGGCGGCGAGGACGCGGGGAGCAACGTGCGCGCGTTCATGGACCCGCGGCTTGGCGGCGACTACCCGCTCGACCTGGCCATGGCCGTGGCGTCGCTGGCGGCGCGGTGCGTGGCGAGGCAGCCCGCCGCGCGGCCGGCCATGGACGAGGTGTTCGTCTCGCTCGCGGCGGTGTACGGCTCCACGGTGGACTGGAACCCCTCGGATCACGGCAACTCCGGGTCGTCGCTGATTGGGAGGTAGCAAAACGAACCAAATCGGTGGCAAATTCGATTCAAATCGATGCGAAAAGATCGGAATTTTTCAAATTGAGTTTTGAATTTGTAGCTGAAAATAGTATTTGTGTTGCAATTGATGGTGCGAATAAAAACTGTCCTCGAGCAGCAGCGACAACTTG
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| CDS seq | TTACAAGGCCTCGCCGGAGACGGAGACGGAGACCAATCCGCCCCCGACCTCGCCGATGGCGGAAACTCCACGCCGAATCCGCCGCGGCGGCGCCGGGCTCTCGCTCGTCGTCGTCGCCCTCCTCCTCGCCGTCGCGGCGAGGGCGCAGCAGGAGTACGAGGCGAACCAGCAGAACGCCTGCTACGCCACCAACGCGAGCTCCACCCTCGGCTACACCTGCAACGCCACCTCCGCCTCCGCCGCCGCCGCGGCGCCCTGCGACGCGTACCTGGTGTTCCGCTCCTCCCCGCCCCTCTACGCCTCCGCTGTCTCCATCTCCTACCTCCTCAACGTCGCCGCCGCCGCCGTCGCCGACTCCAACGCCGTCGACCCGGTCGCCCCCGTCGCCGCCGACCGCCTCGTGCTCGCGCCCGTGCCGTGCGGCTGCTCCCCGGGCGGCTACTACCAGCACAACGCCTCCCACACCATCCGCGACACCGGCGTCGAGACCTACTTCATCATCGCCAACCTCACCTACCAGGGCCTCTCGACGTGCCAGGCTCTCATCGCGCAGAATCCCCTCCACGACAGCCGCGGCCTCGTCGCCGGCGACAACCTCACCGTCCCGCTCCGCTGCGCCTGCCCCTCGCCGCCGCAGGCCGCCGCGGGCGTCAAGCACATGGTCACCTACCTCGTCACCTGGGGCGACACCGTCCGCGGCTTGGCGGCGACTACCCGCTCGACCTGGCCATGGCCGTGGCGTCGCTGGCGGCGCGGTGCGTGGCGAGGCAGCCCGCCGCGCGGCCGGCCATGGACGAGGTGTTCGTCTCGCTCGCGGCGGTGTACGGCTCCACGGTGGACTGGAACCCCTCGGATCACGGCAACTCCGGGTCGTCGCTGATTGGGAGGTAG
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| Protein seq | LQGLAGDGDGDQSAPDLADGGNSTPNPPRRRRALARRRRPPPRRRGEGAAGVRGEPAERLLRHQRELHPRLHLQRHLRLRRRRGALRRVPGVPLLPAPLRLRCLHLLPPQRRRRRRRRLQRRRPGRPRRRRPPRARARAVRLLPGRLLPAQRLPHHPRHRRRDLLHHRQPHLPGPLDVPGSHRAESPPRQPRPRRRRQPHRPAPLRLPLAAAGRRGRQAHGHLPRHLGRHRPRLGGDYPLDLAMAVASLAARCVARQPAARPAMDEVFVSLAAVYGSTVDWNPSDHGNSGSSLIGR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os02g0193000 | Os02t0193000-01 | Chr02 | 5179724 | 5182004 | + | irgsp1_rep | ||
| CDS seq | TTACAAGGCCTCGCCGGAGACGGAGACGGAGACCAATCCGCCCCCGACCTCGCCGATGGCGGAAACTCCACGCCGAATCCGCCGCGGCGGCGCCGGGCTCTCGCTCGTCGTCGTCGCCCTCCTCCTCGCCGTCGCGGCGAGGGCGCAGCAGGAGTACGAGGCGAACCAGCAGAACGCCTGCTACGCCACCAACGCGAGCTCCACCCTCGGCTACACCTGCAACGCCACCTCCGCCTCCGCCGCCGCCGCGGCGCCCTGCGACGCGTACCTGGTGTTCCGCTCCTCCCCGCCCCTCTACGCCTCCGCTGTCTCCATCTCCTACCTCCTCAACGTCGCCGCCGCCGCCGTCGCCGACTCCAACGCCGTCGACCCGGTCGCCCCCGTCGCCGCCGACCGCCTCGTGCTCGCGCCCGTGCCGTGCGGCTGCTCCCCGGGCGGCTACTACCAGCACAACGCCTCCCACACCATCCGCGACACCGGCGTCGAGACCTACTTCATCATCGCCAACCTCACCTACCAGGGCCTCTCGACGTGCCAGGCTCTCATCGCGCAGAATCCCCTCCACGACAGCCGCGGCCTCGTCGCCGGCGACAACCTCACCGTCCCGCTCCGCTGCGCCTGCCCCTCGCCGCCGCAGGCCGCCGCGGGCGTCAAGCACATGGTCACCTACCTCGTCACCTGGGGCGACACCGTCCGCGGCTTGGCGGCGACTACCCGCTCGACCTGGCCATGGCCGTGGCGTCGCTGGCGGCGCGGTGCGTGGCGAGGCAGCCCGCCGCGCGGCCGGCCATGGACGAGGTGTTCGTCTCGCTCGCGGCGGTGTACGGCTCCACGGTGGACTGGAACCCCTCGGATCACGGCAACTCCGGGTCGTCGCTGATTGGGAGGTAG
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| Protein seq | LQGLAGDGDGDQSAPDLADGGNSTPNPPRRRRALARRRRPPPRRRGEGAAGVRGEPAERLLRHQRELHPRLHLQRHLRLRRRRGALRRVPGVPLLPAPLRLRCLHLLPPQRRRRRRRRLQRRRPGRPRRRRPPRARARAVRLLPGRLLPAQRLPHHPRHRRRDLLHHRQPHLPGPLDVPGSHRAESPPRQPRPRRRRQPHRPAPLRLPLAAAGRRGRQAHGHLPRHLGRHRPRLGGDYPLDLAMAVASLAARCVARQPAARPAMDEVFVSLAAVYGSTVDWNPSDHGNSGSSLIGR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0193000 | RBH | 0.233184 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g09960 | RBH | 0.276115 | 0.283037 | 0.064330 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0007000 | SBH | 0.0 | 1.101189 | 0.266138 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0007160 | SBH | 0.0 | 1.132687 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0006940 | SBH | 0.176508 | 0.0 | 0.273817 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0006880 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0006950 | SBH | 0.439293 | 1.688964 | 1.423530 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0087100 | RBH | 1.786769 | 24.934599 | 0.9392395 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0006890 | SBH | 0.040602 | 0.134173 | 0.154813 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0089800 | RBH | 2.6378695 | 28.062851 | 1.8794965 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0007320 | SBH | 0.034765 | 0.049133 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0006930 | SBH | 0.076542 | 3.794844 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0007200 | SBH | 0.0 | 2.649705 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0007200 | SBH | 0.0 | 0.100179 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0006950 | SBH | 0.043475 | 1.745700 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G007050 | SBH | 0.116118 | 0.373239 | 0.130662 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0007030 | SBH | 0.594335 | 1.658854 | 0.0 |
