Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNip_02g0192200 OGI:02015330 | 16/16 Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) Chr02:5121681-5125735
Gene Symbol -
DNA seq

CCCTAGCCGGCGGCGGCGGCTGCACGAGCACGAGCACAATCCCCGCGAGCTCCAAACCCTAGCCTAGCCGCACGCGCGCGCGCCCGCCGCGCGCCACGGTGGCCGGCGGCGCTCCGTCCGCCGGTGCTCGCGGGCTGGGAGGTGAGGCCGTGATTTGGGGGGTGTTCCTGGCGGCGGCGGCGGCGGCGGCGTGGGTGGTGAGGGAGCGGAGGCGCGACTACTGCATCCCCGACTCCGGCAACTGCAGCTGTGGAAGCTTCACCGTGGCCGGTAAAAATTCCGTGCGTTCATATGTAAATAAATATAATGGAATATCGAAAATATTTGTGGAAATAATTGGGGGGCTTCATTTCGTGCGTTCGTATGTAATAAATATAATGGCTTATCGAAAGAATTTGTGGAAATAGTTGGGGGGTTTCTTTGCTTTTGATGAATGTTTAGACATTGAGCTGTTCGTGGGTAGAATTTGTGGATTTTGTGAGGGTTTCCCGTGATCTTTCTGTCCTGGGGGATGGAGAGGAGACGGGATTAGGGTTGGATCACTGACGTTTTGGGCGTAGGTTTGGGATCTGATGAGTAATCATCATCTCACCACGGTGGCGAAAAGTGTGTCCAGAAACTAATGGATGGTCATTTCTCCAGTTTCAAGTTTTCCACTTTATGTGATATAGATAGAACCCTCAGTTCCATATTCTTCAATTTAAGCACTGGGACCTTTTGTTTTGAGTTATATAACTAAATTAAACTGTTGGGAGGATAAGGGGTAAGAAGAATATTTTCTCTACCAATAATAAGCTGTTGTAAGCAATGCAGAGAAAAGTAAGGGAGTGATGGGCAGATTAGAGTTTCTGCCAAAGTCCTTCAAGTCTTATCTAATTGAAATTAGGTCCAAAAGTTTTGAAACCTATATGTATGGAGGGGATATGTAATAGTAATATGGAAATTAGGGTATCCTGTGCGTTCCCAGCATTCCAGTACCAAAAGTACACTTACATAAATAGTAAATTGTTGCACGCAAAATTAATCATCTGACTGAACAGAGAGTAATATATATTTTATGGTTATCTACGATTGGCTGTCTAAAACTCATTTGCCTGAGTAGTTAAGTGGTAGCTTCTTTAAAAGGATTAGGATACCAGGAAACTCGGTAAAAAAAATGTTCTGTTATTATTTTCTGTCTGTATCTCTGTTAATATAGTGGTATAGATTATAGTAGTATTATTCTAGTGAGACTAGATAATTCATGTGCTGGATGCTGTTTTTATGTCCTGCCCCATTTGTTTAAGGATGGCCTGCTGCTTGTGTCTCTCAAAACTCTTTAAGTTTTTCACTCGGCAATATGGTAGCCTGATAATATCTTGAACTTGATGCACTGCCTTTAACTGGTAAACAAGTATCGGCTGCACAATAAGTACTTTCCCATGTAGATTAACTTGCTGAGCATACATCCTTAATTCTGCAAATCATTAACACTTTCATTGAACCTCTTCTTAGGAAAGTGTAAGTCATGGGGAGCAAACAGATAGTAGCTGTTCTTCAAGTAGGTGGAGAATTCAAAACTGATGATGATGGACAGATGTCCTATTCTGGTGGAGAGGCGCACGCGATGCATGTGAAAAGTGATTGGACTTTTAAAACATTCAAACATGAGATATCTTCAACGCTCAATAACCTCAAACTTGACTCCTATGTGTTCAAGTACTTCCTTCCGAGGAATAACAAGACTTTGATTTCAATTTCCAATGACAAAGACCTAAAACGCATGGTTGAATTCCATGCAGAGTCAGAGACAACATATATTTATGTCATGAAGAAGGCTGACAACAGGTACCCTTCTGACTGGCATAAACATCTTCATAAGTGGATATCCAAAAATGACATGAGACATTTTTTTCAGGGTAAAAACATCTGCCGTGGTGCCTGCTGCTTCTGCAGATCATGCTGTAGCAGCAACTACTCCAGATGGATCTAAGAGGCAAAAGATTTGTGCAAGTTGGGAGAATGCGATTACTGGAGCTGGTCAAGTGTTTGAAGGTCCAAAGGAATTCCGTGATGCACTACACAAGTATGCCATTGCACATAGGTTCCATTACAGATTTGTCAAGAATGACTCTTCTCGTGTCACTGTGGAATGTACCGCTGAAGGATGTCCATGGCGTATACATGCATCCAAGTCTCCTGCAAAGAAGGATTTCATGATTAAGAAAGTTTTTGGAAGTCATACATGTGAATCAGAGTCAGTCAAAAGTCATCGTCTAGCGTCTCAAAAGTGGGTGGCCAGTGTTATTAAGGAAAAATTGCGTGATAGTCCAAACTATAGGCCAAGAGATATTGCTAATGATCTTCAGCGGGAATATGGGCTAAGCCTGAATTACTCCCAAGCTTGGCGAGGCAAATCAATAGCCCAGAAAGAACTATACAGTTCACATGAAGAGGCATGCAACCAGCTTCCTTGGTTTTGCCAAAGGATTGTCGAGACAAACCCTGGAAGTGCGGCAACAGTAGAGGCCTTGGAAGATTCAAAATTCCGCTTCTTTGTTGCATTTCATGCCTCCATTCAAGGTTTTGTGCATGGCTGCAGACCTCTCCTCTTTCTTGATGTGATATCTGTGAAACCGAACAAGCATTGGAAGCTGTTGGCTGCTACCTCAGTTGATGGTGAAGGCGATATGTTCCCAGTTGCACTCTCTGTAGTGGACGACGAGAGTCAAGAAAATTGGCATTGGTTTCTTGAACAGCTAAAAGCTTCATTGCCTGTGTCTGGAGAACTAACATTCATATCAAATGGCAAATGTGGTCTGTTGGATGAGGTCTCTCTTATATTTCCAGATAGCTATCATGGCTACCATGTCAACTATTTTATTGAAGAATTTAAGGCACAATTGGATGACAGTTGGAGTGAAGAACTAAAAGATACAATGGTTGAGCATGTTAAGAAAGCCATGTATTCATGCAAAGTTGATGAATTCAACCAGTGTATTGAACTCATCAAAGTTGAATCTGATAAGCTTGCTGAATGGCTTTTGGAGACTAAACCTGAGAAGTGGTCAGATGCCTTCTTCAAGGGGTCGCGACTTGGCCAGTACACCTGCAATGTTCCCGAGACAATTCTTCAGTGGGTCCCCAGTAGATATGAGCTCTCAGTAGTGCAGTTGGTTGATACAATCAGATGCAACTTGATGGAGATGATGTATACGCGCAGGGAATATTCGAATTCATGGACGGAACCGCTAACTCCATCAACCAATCAGAAAATTCAGGAAGAGATGGGCAAAGCTCTTACACACAGTGTTGTTTGCTCAACAGGCAATGACGGAAACAATAATGTGTTTGAGGTATGCGATGGCGCTGTCAATGTTGTCAACATTGATACATGGGACTGCACCTGCAGAAAGTGGCATGTCTCTGGGATCCCATGCTCACATGCAATTGCGGTGTTTGAGCGCACTGATCATAACCCACTTGACTTCTGTGCCAAGTATTTCACAACAGAGTGCTACCGCTTGACCTATGCCATGTCAATCAATCCAATACCTGACATTGTTGTGGCTGCTCCATCAACTGACCCATCACAAGGCGAGGCATTACATCAATCACCGATTCTAACCCGGAGGCAGGTTGGAAGACCAAAGGAAAAGCCAGCTGATCCTCGAATCGCAATCAAAAGGGCGGTGCGCTGCAGCAGGTGTAAGGGTTATGGGCACAACAAGGCAACCTGCAAAGTCCCTATCGCAGCATAAAACCCTTGCCATATGTTCTCAAGTGTAAATTATGTTGTGCCTTTTGTTGCCCTTTTATGAACTCGTTCTAGTGGAACCTGTGCAATGCCATCATGTATCTTTTATCAGATAACGTGTGAAACATAATCTTATTCGGTGGTTTTAGCTCCAAGTATGGTTTGCCTAGCACTAGCCGGTACTTTTAGATTGAACTTTTTGTGGTGGGCAGAATCTGGGAAAAGGATTGGAGTTTTTTGTACGTTGTTATCCAGCACTCCCTTCCTCCATATGGTTGTAAATTTTGACATCCGAAGATAAGTTATTTTATTTCTGTTG

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CDS seq

ATGGGGAGCAAACAGATAGTAGCTGTTCTTCAAGTAGGTGGAGAATTCAAAACTGATGATGATGGACAGATGTCCTATTCTGGTGGAGAGGCGCACGCGATGCATGTGAAAAGTGATTGGACTTTTAAAACATTCAAACATGAGATATCTTCAACGCTCAATAACCTCAAACTTGACTCCTATGTGTTCAAGTACTTCCTTCCGAGGAATAACAAGACTTTGATTTCAATTTCCAATGACAAAGACCTAAAACGCATGGTTGAATTCCATGCAGAGTCAGAGACAACATATATTTATGTCATGAAGAAGGCTGACAACAGGGTAAAAACATCTGCCGTGGTGCCTGCTGCTTCTGCAGATCATGCTGTAGCAGCAACTACTCCAGATGGATCTAAGAGGCAAAAGATTTGTGCAAGTTGGGAGAATGCGATTACTGGAGCTGGTCAAGTGTTTGAAGGTCCAAAGGAATTCCGTGATGCACTACACAAGTATGCCATTGCACATAGGTTCCATTACAGATTTGTCAAGAATGACTCTTCTCGTGTCACTGTGGAATGTACCGCTGAAGGATGTCCATGGCGTATACATGCATCCAAGTCTCCTGCAAAGAAGGATTTCATGATTAAGAAAGTTTTTGGAAGTCATACATGTGAATCAGAGTCAGTCAAAAGTCATCGTCTAGCGTCTCAAAAGTGGGTGGCCAGTGTTATTAAGGAAAAATTGCGTGATAGTCCAAACTATAGGCCAAGAGATATTGCTAATGATCTTCAGCGGGAATATGGGCTAAGCCTGAATTACTCCCAAGCTTGGCGAGGCAAATCAATAGCCCAGAAAGAACTATACAGTTCACATGAAGAGGCATGCAACCAGCTTCCTTGGTTTTGCCAAAGGATTGTCGAGACAAACCCTGGAAGTGCGGCAACAGTAGAGGCCTTGGAAGATTCAAAATTCCGCTTCTTTGTTGCATTTCATGCCTCCATTCAAGGTTTTGTGCATGGCTGCAGACCTCTCCTCTTTCTTGATGTGATATCTGTGAAACCGAACAAGCATTGGAAGCTGTTGGCTGCTACCTCAGTTGATGGTGAAGGCGATATGTTCCCAGTTGCACTCTCTGTAGTGGACGACGAGAGTCAAGAAAATTGGCATTGGTTTCTTGAACAGCTAAAAGCTTCATTGCCTGTGTCTGGAGAACTAACATTCATATCAAATGGCAAATGTGGTCTGTTGGATGAGGTCTCTCTTATATTTCCAGATAGCTATCATGGCTACCATGTCAACTATTTTATTGAAGAATTTAAGGCACAATTGGATGACAGTTGGAGTGAAGAACTAAAAGATACAATGGTTGAGCATGTTAAGAAAGCCATGTATTCATGCAAAGTTGATGAATTCAACCAGTGTATTGAACTCATCAAAGTTGAATCTGATAAGCTTGCTGAATGGCTTTTGGAGACTAAACCTGAGAAGTGGTCAGATGCCTTCTTCAAGGGGTCGCGACTTGGCCAGTACACCTGCAATGTTCCCGAGACAATTCTTCAGTGGGTCCCCAGTAGATATGAGCTCTCAGTAGTGCAGTTGGTTGATACAATCAGATGCAACTTGATGGAGATGATGTATACGCGCAGGGAATATTCGAATTCATGGACGGAACCGCTAACTCCATCAACCAATCAGAAAATTCAGGAAGAGATGGGCAAAGCTCTTACACACAGTGTTGTTTGCTCAACAGGCAATGACGGAAACAATAATGTGTTTGAGGTATGCGATGGCGCTGTCAATGTTGTCAACATTGATACATGGGACTGCACCTGCAGAAAGTGGCATGTCTCTGGGATCCCATGCTCACATGCAATTGCGGTGTTTGAGCGCACTGATCATAACCCACTTGACTTCTGTGCCAAGTATTTCACAACAGAGTGCTACCGCTTGACCTATGCCATGTCAATCAATCCAATACCTGACATTGTTGTGGCTGCTCCATCAACTGACCCATCACAAGGCGAGGCATTACATCAATCACCGATTCTAACCCGGAGGCAGGTTGGAAGACCAAAGGAAAAGCCAGCTGATCCTCGAATCGCAATCAAAAGGGCGGTGCGCTGCAGCAGGTGTAAGGGTTATGGGCACAACAAGGCAACCTGCAAAGTCCCTATCGCAGCATAA

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Protein seq

MGSKQIVAVLQVGGEFKTDDDGQMSYSGGEAHAMHVKSDWTFKTFKHEISSTLNNLKLDSYVFKYFLPRNNKTLISISNDKDLKRMVEFHAESETTYIYVMKKADNRVKTSAVVPAASADHAVAATTPDGSKRQKICASWENAITGAGQVFEGPKEFRDALHKYAIAHRFHYRFVKNDSSRVTVECTAEGCPWRIHASKSPAKKDFMIKKVFGSHTCESESVKSHRLASQKWVASVIKEKLRDSPNYRPRDIANDLQREYGLSLNYSQAWRGKSIAQKELYSSHEEACNQLPWFCQRIVETNPGSAATVEALEDSKFRFFVAFHASIQGFVHGCRPLLFLDVISVKPNKHWKLLAATSVDGEGDMFPVALSVVDDESQENWHWFLEQLKASLPVSGELTFISNGKCGLLDEVSLIFPDSYHGYHVNYFIEEFKAQLDDSWSEELKDTMVEHVKKAMYSCKVDEFNQCIELIKVESDKLAEWLLETKPEKWSDAFFKGSRLGQYTCNVPETILQWVPSRYELSVVQLVDTIRCNLMEMMYTRREYSNSWTEPLTPSTNQKIQEEMGKALTHSVVCSTGNDGNNNVFEVCDGAVNVVNIDTWDCTCRKWHVSGIPCSHAIAVFERTDHNPLDFCAKYFTTECYRLTYAMSINPIPDIVVAAPSTDPSQGEALHQSPILTRRQVGRPKEKPADPRIAIKRAVRCSRCKGYGHNKATCKVPIAA

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNip_02g0192200 OsNip_02t0192200-01 Chr02 5121681 5125735 + RAP2018-11-26
CDS seq

ATGGGGAGCAAACAGATAGTAGCTGTTCTTCAAGTAGGTGGAGAATTCAAAACTGATGATGATGGACAGATGTCCTATTCTGGTGGAGAGGCGCACGCGATGCATGTGAAAAGTGATTGGACTTTTAAAACATTCAAACATGAGATATCTTCAACGCTCAATAACCTCAAACTTGACTCCTATGTGTTCAAGTACTTCCTTCCGAGGAATAACAAGACTTTGATTTCAATTTCCAATGACAAAGACCTAAAACGCATGGTTGAATTCCATGCAGAGTCAGAGACAACATATATTTATGTCATGAAGAAGGCTGACAACAGGGTAAAAACATCTGCCGTGGTGCCTGCTGCTTCTGCAGATCATGCTGTAGCAGCAACTACTCCAGATGGATCTAAGAGGCAAAAGATTTGTGCAAGTTGGGAGAATGCGATTACTGGAGCTGGTCAAGTGTTTGAAGGTCCAAAGGAATTCCGTGATGCACTACACAAGTATGCCATTGCACATAGGTTCCATTACAGATTTGTCAAGAATGACTCTTCTCGTGTCACTGTGGAATGTACCGCTGAAGGATGTCCATGGCGTATACATGCATCCAAGTCTCCTGCAAAGAAGGATTTCATGATTAAGAAAGTTTTTGGAAGTCATACATGTGAATCAGAGTCAGTCAAAAGTCATCGTCTAGCGTCTCAAAAGTGGGTGGCCAGTGTTATTAAGGAAAAATTGCGTGATAGTCCAAACTATAGGCCAAGAGATATTGCTAATGATCTTCAGCGGGAATATGGGCTAAGCCTGAATTACTCCCAAGCTTGGCGAGGCAAATCAATAGCCCAGAAAGAACTATACAGTTCACATGAAGAGGCATGCAACCAGCTTCCTTGGTTTTGCCAAAGGATTGTCGAGACAAACCCTGGAAGTGCGGCAACAGTAGAGGCCTTGGAAGATTCAAAATTCCGCTTCTTTGTTGCATTTCATGCCTCCATTCAAGGTTTTGTGCATGGCTGCAGACCTCTCCTCTTTCTTGATGTGATATCTGTGAAACCGAACAAGCATTGGAAGCTGTTGGCTGCTACCTCAGTTGATGGTGAAGGCGATATGTTCCCAGTTGCACTCTCTGTAGTGGACGACGAGAGTCAAGAAAATTGGCATTGGTTTCTTGAACAGCTAAAAGCTTCATTGCCTGTGTCTGGAGAACTAACATTCATATCAAATGGCAAATGTGGTCTGTTGGATGAGGTCTCTCTTATATTTCCAGATAGCTATCATGGCTACCATGTCAACTATTTTATTGAAGAATTTAAGGCACAATTGGATGACAGTTGGAGTGAAGAACTAAAAGATACAATGGTTGAGCATGTTAAGAAAGCCATGTATTCATGCAAAGTTGATGAATTCAACCAGTGTATTGAACTCATCAAAGTTGAATCTGATAAGCTTGCTGAATGGCTTTTGGAGACTAAACCTGAGAAGTGGTCAGATGCCTTCTTCAAGGGGTCGCGACTTGGCCAGTACACCTGCAATGTTCCCGAGACAATTCTTCAGTGGGTCCCCAGTAGATATGAGCTCTCAGTAGTGCAGTTGGTTGATACAATCAGATGCAACTTGATGGAGATGATGTATACGCGCAGGGAATATTCGAATTCATGGACGGAACCGCTAACTCCATCAACCAATCAGAAAATTCAGGAAGAGATGGGCAAAGCTCTTACACACAGTGTTGTTTGCTCAACAGGCAATGACGGAAACAATAATGTGTTTGAGGTATGCGATGGCGCTGTCAATGTTGTCAACATTGATACATGGGACTGCACCTGCAGAAAGTGGCATGTCTCTGGGATCCCATGCTCACATGCAATTGCGGTGTTTGAGCGCACTGATCATAACCCACTTGACTTCTGTGCCAAGTATTTCACAACAGAGTGCTACCGCTTGACCTATGCCATGTCAATCAATCCAATACCTGACATTGTTGTGGCTGCTCCATCAACTGACCCATCACAAGGCGAGGCATTACATCAATCACCGATTCTAACCCGGAGGCAGGTTGGAAGACCAAAGGAAAAGCCAGCTGATCCTCGAATCGCAATCAAAAGGGCGGTGCGCTGCAGCAGGTGTAAGGGTTATGGGCACAACAAGGCAACCTGCAAAGTCCCTATCGCAGCATAA

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Protein seq

MGSKQIVAVLQVGGEFKTDDDGQMSYSGGEAHAMHVKSDWTFKTFKHEISSTLNNLKLDSYVFKYFLPRNNKTLISISNDKDLKRMVEFHAESETTYIYVMKKADNRVKTSAVVPAASADHAVAATTPDGSKRQKICASWENAITGAGQVFEGPKEFRDALHKYAIAHRFHYRFVKNDSSRVTVECTAEGCPWRIHASKSPAKKDFMIKKVFGSHTCESESVKSHRLASQKWVASVIKEKLRDSPNYRPRDIANDLQREYGLSLNYSQAWRGKSIAQKELYSSHEEACNQLPWFCQRIVETNPGSAATVEALEDSKFRFFVAFHASIQGFVHGCRPLLFLDVISVKPNKHWKLLAATSVDGEGDMFPVALSVVDDESQENWHWFLEQLKASLPVSGELTFISNGKCGLLDEVSLIFPDSYHGYHVNYFIEEFKAQLDDSWSEELKDTMVEHVKKAMYSCKVDEFNQCIELIKVESDKLAEWLLETKPEKWSDAFFKGSRLGQYTCNVPETILQWVPSRYELSVVQLVDTIRCNLMEMMYTRREYSNSWTEPLTPSTNQKIQEEMGKALTHSVVCSTGNDGNNNVFEVCDGAVNVVNIDTWDCTCRKWHVSGIPCSHAIAVFERTDHNPLDFCAKYFTTECYRLTYAMSINPIPDIVVAAPSTDPSQGEALHQSPILTRRQVGRPKEKPADPRIAIKRAVRCSRCKGYGHNKATCKVPIAA

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.617810 0.087685 1.940817

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_06g0632700 RBH 1.832181 2.083357 2.992766
Nipponbare | IRGSP 1.0 | MSU LOC_Os02g09900 RBH 0.417341 0.727661 0.499062
Nipponbare | IRGSP 1.0 | RAP-db Os02g0192200 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_02g0029330 RBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_02g0029390 RBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) NA NA NA NA NA
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_02g0028850 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_02g0029040 RBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_02G0086600 RBH 5.422314 12.502957 15.173641
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_02g0028410 RBH 0.0 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_02G0089400 RBH 5.688096 12.842806 18.0511505
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_02g0029160 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_02g0028460 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_02g0029200 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_02g0029060 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_02g0028740 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_02G029300 RBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_02g0029070 RBH 0.0 0.0 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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