Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_02g0029330 | OGI:02015330 | 16/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr02:28547422-28550176 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTCATCAGACCATGATAATTGTTCTTGTATACACTGGAGGTGAAATTGTATATGGAGCGACTGGTGCAGAGTATAGCATTCCACCCAAGATTACTTTTCCTGCTTCCGAAGCTACAACTTTCGAAGATGTAAAGAATGAGATTTATGGAGGGCTAAAATATTCTGAAACTGAATATTCACTTGTTATACAAGGCCGATATGATGTAGGAGCACCAAGTCCACATTTTTTCCAGTTGATCCCATTATATAAGACCAGATCATGGCAAATGATTTTTGACATGACATTAGCACTGAACAGTTGGCGTATGGTGGAATTATATGTTGAGTTCACTCCAACAAATAGTGGATTCAGCCAAAACCACATTGTTAGTGAAATAACAAGAGAAAACCTAGAACCAACTATGGCTACAGTTGCTGAGAATATTGTGTCAGCATCACATCAGTCGCCTAAGCATGGTATATCTCCTAAAATTCATGATGTGAGTAATTCTGCACCAATTGTGGGCTTGTCTTCTGATAATATCATAAATGAAGCGCAAGAAAATTCTCAAGATGATGGCTATGTGGACGAAGAGACAGAACGTGAGGGTGATATGATTGAGGAAGATGAGAGCGATGGCGAAGCCGAAGAGGATGTGAATGATAACACCTATGGTCAGCCTGTGGTCAAATTGATCAAATCGTTGCCACTCGTGGGCAGGTCTGACAAGCACCCTGTAAGTGCCTTCCATGATATATCTGTGCTACAGAATACAACGGCCGATGAGAGATTCTTTGGTTCGAGGAAACATTTTAACAGTCCATTAGCTAAAGGCCGAACTTTTGATTCCAAGGAGCATTTGCAGTTTGCTATTAATGAATTTCACATTAGTACCAATCAAGAAGTAAAGGTTACCACAAGTAACAAGTCAAGACTAAGTATGAAGTGCATAGACAATACTTGCTTGTGGAAGCTATATGGGAAACCAACAAAAATTGGTTCAAGTTGGAAGATACAAACTTGCCCCTATCCTCACACATGTCGAGCTCCCGCTGATCGACTTGATCGTGCACAATTGACATCTGCAGTTATTGCAGATGTTATACGTGATGACTTAAAAGAGAACTTGGAGTTGAGCATAATGAACATACGGCAATTAGTTCGGCAACGGTATAAAAATGTAAAGCCACACTACAACAAGTTATGGCGTGGCCGGGAGTTAGCAATTGCTCAACTTTTTGGAAGTTGGGAAGGATCATATGCATTGCTCACTCCATTATTGGAGGCTATTAAAGCAACTAATCCTGGAACAAGATATCAAATTTTGTCACAACCGATGACTCGTGAAGGGCATCGAGCATTCAAGTGCGTGGCTTGGGCTTTTGGACCTTGTATTGAAGCAGTACCTTATCTTCGACCTGTCATTAATATAGATGCTTCTTTTTTGTCTGGAAGGTACCGAGGTAGGTTGTTGATAGCATGTGGATATGATGCTGAAAACAAATTATTACCTCTTGCATTTGCAATAGTGGAGAAGGAAGACAGTGACAATTGGGGATGGTTCATGAGATGGTTGCGGAAAGAGGTTATTGGTTTTGGTAAATTTGTGTGTGTTATTTCTGATCGCCACAAAGCTATCAAATGGGTGTTCAAGCAGCCACATATTGGATGGAATGAAAGTGCTGGTGAGTGTGTGCATCGATTTTGTTCACAACATATTGCTGAGAATCTTTACAAGCAATGTAAAGATGATGATGTGGTAAAAACTTTTAATTGGGTTGTCAAGAAGAAGAAACCACGTAGATTCAATGAAGGTATGGAAGCTATTTCAAAAACTTGTCCAGATGCAATTGCTTATCTTGGTAAGGTGGGAAAATATCGGCAAGAAGATAAGAATGAGCCGGAAAAATCTAAAAAGGTTTTCCAGTGCATGGATGGTGGACATCGATGGGGGATAATGACAAGTAATGGCTCCGAGTCTCTAAATAATGTGTTCAAGTACTCAAGGAGATTACCAGTCATGGCAATAGTGGAGGAAACATTTAACAAGTGCTTAGAATGGTTTATTGATAGAAGAAGATCTTCTCTTGATCTTGCAAACTCAGGGAAAATGTGGTCTCGACGGGTTGAGAAGTTATTAGTGAAACGAGGGGCCAAGGCCGGATCCATGCATGTTATATCATATGGTGATGAAAGAGGAGAATATGAGGTGAAGGTTGACCGTGAACGAGTTGCATTGCATCAAGGAGATCGTGTTGTGTATGTTCGAAGGGATTTCAAGTATAAGCTAGTTATGCGCAACAATGCTATTCCGACATGTGAGTGCCAAAAGCCCAACCTTACTAGTATTCCTTGTGCTCATGTGCTTGCTGTTTGAAAAGATAGAAACCTTAATGAGAATCAGTTTATCCATCCTTACTACTCTTCTACAACACTCGCAAACACTTGGGCTGGTCAGTTTCACCCATATGGAAATCAATCGGAGTGGCCAACTTATAATGGTCCAATTATTGAGCCTGATGCTAGGTTGATACAGTTGGGTCGACGAAGACATAACCGAATTCCAATGTATATGGATGAAATGCAAGGTCGACGCTTAGGACATCAAGCACGTCGTTCAACCCAAGATAAAAATCAAGCCGGTCTGTCATAATTTAATTATTGTATGATATATCTATGCTTCCTACTAATATAGAATTAACACTGCAGGTGTGCCATCTCACCAACATCAAGGGTGATACAATCCATAGGATGGACTCCGCTGCATCGCCCTAG
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| CDS seq | ATGATAATTGTTCTTGTATACACTGGAGGTGAAATTGTATATGGAGCGACTGGTGCAGAGTATAGCATTCCACCCAAGATTACTTTTCCTGCTTCCGAAGCTACAACTTTCGAAGATGTAAAGAATGAGATTTATGGAGGGCTAAAATATTCTGAAACTGAATATTCACTTGTTATACAAGGCCGATATGATGTAGGAGCACCAAGTCCACATTTTTTCCAGTTGATCCCATTATATAAGACCAGATCATGGCAAATGATTTTTGACATGACATTAGCACTGAACAGTTGGCGTATGGTGGAATTATATGTTGAGTTCACTCCAACAAATAGTGGATTCAGCCAAAACCACATTGTTAGTGAAATAACAAGAGAAAACCTAGAACCAACTATGGCTACAGTTGCTGAGAATATTGTGTCAGCATCACATCAGTCGCCTAAGCATGGTATATCTCCTAAAATTCATGATGTGAGTAATTCTGCACCAATTGTGGGCTTGTCTTCTGATAATATCATAAATGAAGCGCAAGAAAATTCTCAAGATGATGGCTATGTGGACGAAGAGACAGAACGTGAGGGTGATATGATTGAGGAAGATGAGAGCGATGGCGAAGCCGAAGAGGATGTGAATGATAACACCTATGGTCAGCCTGTGGTCAAATTGATCAAATCGTTGCCACTCGTGGGCAGGTCTGACAAGCACCCTGTAAGTGCCTTCCATGATATATCTGTGCTACAGAATACAACGGCCGATGAGAGATTCTTTGGTTCGAGGAAACATTTTAACAGTCCATTAGCTAAAGGCCGAACTTTTGATTCCAAGGAGCATTTGCAGTTTGCTATTAATGAATTTCACATTAGTACCAATCAAGAAGTAAAGGTTACCACAAGTAACAAGTCAAGACTAAGTATGAAGTGCATAGACAATACTTGCTTGTGGAAGCTATATGGGAAACCAACAAAAATTGGTTCAAGTTGGAAGATACAAACTTGCCCCTATCCTCACACATGTCGAGCTCCCGCTGATCGACTTGATCGTGCACAATTGACATCTGCAGTTATTGCAGATGTTATACGTGATGACTTAAAAGAGAACTTGGAGTTGAGCATAATGAACATACGGCAATTAGTTCGGCAACGGTATAAAAATGTAAAGCCACACTACAACAAGTTATGGCGTGGCCGGGAGTTAGCAATTGCTCAACTTTTTGGAAATGATGATGTGGTAAAAACTTTTAATTGGGTTGTCAAGAAGAAGAAACCACGTAGATTCAATGAAGGTATGGAAGCTATTTCAAAAACTTGTCCAGATGCAATTGCTTATCTTGGTAAGGTGGGAAAATATCGGCAAGAAGATAAGAATGAGCCGGAAAAATCTAAAAAGGTTTTCCAGTGCATGGATGGTGGACATCGATGGGGGATAATGACAAGTAATGGCTCCGAGTCTCTAAATAATGTGTTCAAGTACTCAAGGAGATTACCAGTCATGGCAATAGTGGAGGAAACATTTAACAAGTGCTTAGAATGGTTTATTGATAGAAGAAGATCTTCTCTTGATCTTGCAAACTCAGGGAAAATGTGGTCTCGACGGGTTGAGAAGTTATTAGTGAAACGAGGGGCCAAGGCCGGATCCATGCATGTTATATCATATGGTGATGAAAGAGGAGAATATGAGGTGAAGGTTGACCGTGAACGAGTTGCATTGCATCAAGGAGATCGTGTTGTGTATGTTCGAAGGGATTTCAAGTATAAGCTAGTTATGCGCAACAATGCTATTCCGACATGTGAGTGCCAAAAGCCCAACCTTACTAATAGAAACCTTAATGAGAATCAGTTTATCCATCCTTACTACTCTTCTACAACACTCGCAAACACTTGGGCTGGTCAGTTTCACCCATATGGAAATCAATCGGAGTGGCCAACTTATAATGGTCCAATTATTGAGCCTGATGCTAGGTTGATACAGTTGGGTCGACGAAGACATAACCGAATTCCAATGTATATGGATGAAATGCAAGGTCGACGCTTAGGACATCAAGCACGTCGTTCAACCCAAGATAAAAATCAAGCCGAATTAACACTGCAGGTGTGCCATCTCACCAACATCAAGGGTGATACAATCCATAGGATGGACTCCGCTGCATCGCCCTAG
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| Protein seq | MIIVLVYTGGEIVYGATGAEYSIPPKITFPASEATTFEDVKNEIYGGLKYSETEYSLVIQGRYDVGAPSPHFFQLIPLYKTRSWQMIFDMTLALNSWRMVELYVEFTPTNSGFSQNHIVSEITRENLEPTMATVAENIVSASHQSPKHGISPKIHDVSNSAPIVGLSSDNIINEAQENSQDDGYVDEETEREGDMIEEDESDGEAEEDVNDNTYGQPVVKLIKSLPLVGRSDKHPVSAFHDISVLQNTTADERFFGSRKHFNSPLAKGRTFDSKEHLQFAINEFHISTNQEVKVTTSNKSRLSMKCIDNTCLWKLYGKPTKIGSSWKIQTCPYPHTCRAPADRLDRAQLTSAVIADVIRDDLKENLELSIMNIRQLVRQRYKNVKPHYNKLWRGRELAIAQLFGNDDVVKTFNWVVKKKKPRRFNEGMEAISKTCPDAIAYLGKVGKYRQEDKNEPEKSKKVFQCMDGGHRWGIMTSNGSESLNNVFKYSRRLPVMAIVEETFNKCLEWFIDRRRSSLDLANSGKMWSRRVEKLLVKRGAKAGSMHVISYGDERGEYEVKVDRERVALHQGDRVVYVRRDFKYKLVMRNNAIPTCECQKPNLTNRNLNENQFIHPYYSSTTLANTWAGQFHPYGNQSEWPTYNGPIIEPDARLIQLGRRRHNRIPMYMDEMQGRRLGHQARRSTQDKNQAELTLQVCHLTNIKGDTIHRMDSAASP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_02g0029330 | OsAzu_02g0029330.01 | Chr02 | 28547422 | 28550176 | + | NAM | ||
| CDS seq | ATGATAATTGTTCTTGTATACACTGGAGGTGAAATTGTATATGGAGCGACTGGTGCAGAGTATAGCATTCCACCCAAGATTACTTTTCCTGCTTCCGAAGCTACAACTTTCGAAGATGTAAAGAATGAGATTTATGGAGGGCTAAAATATTCTGAAACTGAATATTCACTTGTTATACAAGGCCGATATGATGTAGGAGCACCAAGTCCACATTTTTTCCAGTTGATCCCATTATATAAGACCAGATCATGGCAAATGATTTTTGACATGACATTAGCACTGAACAGTTGGCGTATGGTGGAATTATATGTTGAGTTCACTCCAACAAATAGTGGATTCAGCCAAAACCACATTGTTAGTGAAATAACAAGAGAAAACCTAGAACCAACTATGGCTACAGTTGCTGAGAATATTGTGTCAGCATCACATCAGTCGCCTAAGCATGGTATATCTCCTAAAATTCATGATGTGAGTAATTCTGCACCAATTGTGGGCTTGTCTTCTGATAATATCATAAATGAAGCGCAAGAAAATTCTCAAGATGATGGCTATGTGGACGAAGAGACAGAACGTGAGGGTGATATGATTGAGGAAGATGAGAGCGATGGCGAAGCCGAAGAGGATGTGAATGATAACACCTATGGTCAGCCTGTGGTCAAATTGATCAAATCGTTGCCACTCGTGGGCAGGTCTGACAAGCACCCTGTAAGTGCCTTCCATGATATATCTGTGCTACAGAATACAACGGCCGATGAGAGATTCTTTGGTTCGAGGAAACATTTTAACAGTCCATTAGCTAAAGGCCGAACTTTTGATTCCAAGGAGCATTTGCAGTTTGCTATTAATGAATTTCACATTAGTACCAATCAAGAAGTAAAGGTTACCACAAGTAACAAGTCAAGACTAAGTATGAAGTGCATAGACAATACTTGCTTGTGGAAGCTATATGGGAAACCAACAAAAATTGGTTCAAGTTGGAAGATACAAACTTGCCCCTATCCTCACACATGTCGAGCTCCCGCTGATCGACTTGATCGTGCACAATTGACATCTGCAGTTATTGCAGATGTTATACGTGATGACTTAAAAGAGAACTTGGAGTTGAGCATAATGAACATACGGCAATTAGTTCGGCAACGGTATAAAAATGTAAAGCCACACTACAACAAGTTATGGCGTGGCCGGGAGTTAGCAATTGCTCAACTTTTTGGAAATGATGATGTGGTAAAAACTTTTAATTGGGTTGTCAAGAAGAAGAAACCACGTAGATTCAATGAAGGTATGGAAGCTATTTCAAAAACTTGTCCAGATGCAATTGCTTATCTTGGTAAGGTGGGAAAATATCGGCAAGAAGATAAGAATGAGCCGGAAAAATCTAAAAAGGTTTTCCAGTGCATGGATGGTGGACATCGATGGGGGATAATGACAAGTAATGGCTCCGAGTCTCTAAATAATGTGTTCAAGTACTCAAGGAGATTACCAGTCATGGCAATAGTGGAGGAAACATTTAACAAGTGCTTAGAATGGTTTATTGATAGAAGAAGATCTTCTCTTGATCTTGCAAACTCAGGGAAAATGTGGTCTCGACGGGTTGAGAAGTTATTAGTGAAACGAGGGGCCAAGGCCGGATCCATGCATGTTATATCATATGGTGATGAAAGAGGAGAATATGAGGTGAAGGTTGACCGTGAACGAGTTGCATTGCATCAAGGAGATCGTGTTGTGTATGTTCGAAGGGATTTCAAGTATAAGCTAGTTATGCGCAACAATGCTATTCCGACATGTGAGTGCCAAAAGCCCAACCTTACTAATAGAAACCTTAATGAGAATCAGTTTATCCATCCTTACTACTCTTCTACAACACTCGCAAACACTTGGGCTGGTCAGTTTCACCCATATGGAAATCAATCGGAGTGGCCAACTTATAATGGTCCAATTATTGAGCCTGATGCTAGGTTGATACAGTTGGGTCGACGAAGACATAACCGAATTCCAATGTATATGGATGAAATGCAAGGTCGACGCTTAGGACATCAAGCACGTCGTTCAACCCAAGATAAAAATCAAGCCGAATTAACACTGCAGGTGTGCCATCTCACCAACATCAAGGGTGATACAATCCATAGGATGGACTCCGCTGCATCGCCCTAG
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| Protein seq | MIIVLVYTGGEIVYGATGAEYSIPPKITFPASEATTFEDVKNEIYGGLKYSETEYSLVIQGRYDVGAPSPHFFQLIPLYKTRSWQMIFDMTLALNSWRMVELYVEFTPTNSGFSQNHIVSEITRENLEPTMATVAENIVSASHQSPKHGISPKIHDVSNSAPIVGLSSDNIINEAQENSQDDGYVDEETEREGDMIEEDESDGEAEEDVNDNTYGQPVVKLIKSLPLVGRSDKHPVSAFHDISVLQNTTADERFFGSRKHFNSPLAKGRTFDSKEHLQFAINEFHISTNQEVKVTTSNKSRLSMKCIDNTCLWKLYGKPTKIGSSWKIQTCPYPHTCRAPADRLDRAQLTSAVIADVIRDDLKENLELSIMNIRQLVRQRYKNVKPHYNKLWRGRELAIAQLFGNDDVVKTFNWVVKKKKPRRFNEGMEAISKTCPDAIAYLGKVGKYRQEDKNEPEKSKKVFQCMDGGHRWGIMTSNGSESLNNVFKYSRRLPVMAIVEETFNKCLEWFIDRRRSSLDLANSGKMWSRRVEKLLVKRGAKAGSMHVISYGDERGEYEVKVDRERVALHQGDRVVYVRRDFKYKLVMRNNAIPTCECQKPNLTNRNLNENQFIHPYYSSTTLANTWAGQFHPYGNQSEWPTYNGPIIEPDARLIQLGRRRHNRIPMYMDEMQGRRLGHQARRSTQDKNQAELTLQVCHLTNIKGDTIHRMDSAASP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0192200 | RBH | 0.617810 | 0.087685 | 1.940817 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g46070 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0192200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0028940 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0029390 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0028870 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0028850 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0029040 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0456200 | RBH | 0.0045105 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0028850 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0484000 | RBH | 0.001857 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0029160 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0028910 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0029200 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0029060 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0028740 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G029300 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0028660 | SBH | 0.0 | 0.0 | 0.0 |
