Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0123100 | OGI:02004540 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:1207635-1211101 | ||||||||
| Gene Symbol | CDC2-2, cdc2Os-2, CDC2Os-2, CDKA-2, CDKA;2, Orysa;CDKA;2, Rcdc2-2, OsCDKA;2, OsCDKA2, CDKA2 | ||||||||||
| DNA seq | AATGCCACAAGCCCAACCCAATTCATCCCCAAGTCCACCACCACACACACACACACACGCACACCACTCCTCTCCCCACAACCCATCCACTCCCACGCCGCCGCCGCCGCCCGGATCGCCGCGAGATGGAGCAGGTGAGCACCCCTCGACCTCCGCGATGACGATGCCCTTTGCTGTATCCGATCCATCCGCGAGCGTGGAGGAAATGGTCGCTGCTGCTGCTGCTGATGATGAGTGTGTTTGTGTGTGGCTGGAGGAGCAGTACGAGAAGGTGGAGAAGATCGGGGAGGGGACGTACGGGGTGGTGTACAAGGGCAAGCACCGGCATACCAACGAGACGATCGCGCTCAAGAAGATCCGCCTGGAGCAGGAGGACGAGGGCGTCCCCTCCACCGCCATCCGCGAGATCTCGCTGCTCAAGGAGATGCAGCATCGCAACATCGTCAGGTGACCCACCTCCTCCCTCCCTGCTAGCTCCATCTCTCTCTGCGGCTGTTGGTTGGGTGGGTGGGTGGATTGATGGATTGCGTGATTTGCGATTTGTGAATGCTTTGGGAATTTGGATTGTGCCGTGCAGGCTGCAGGACGTCGTGCACAAGGAGAAATGCATATACCTCGTCTTCGAGTACCTCGACCTTGACCTCAAGAAGCACATGGACTCATCCCCGGATTTCAAGAACCACCGCATAGTCAAAGTAAGATGTTGAAACTAACATCCTCTTTTCATTGATGCAAGTATCACGCCATTTAGTGATAGTAACTTCGCTGAAAGTGTGGGATGAGCTAGCCATTGCTTCCATTTTGTGCATGGTTTATGTTGAAACGGGAAATGTGATGCTGTCCTTTGCGCCTGTGTGCAGTCGTTCCTCTACCAGATTCTCCGGGGCATTGCGTACTGCCACTCGCACCGTGTTCTCCACCGAGATTTGAAGCCCCAGAACCTGCTGATAGATCGGCGTACCAACTCATTGAAGCTCGCGGACTTTGGGTTGGCCAGGGCATTTGGCATTCCTGTCCGGACATTTACTCACGAGGTACATTTTACAGCCCGACACGTTTTTCGTTTGGTACACTGTGATTTATAGTCCTTGCACATCACACTACAGAAGAGGGGAACTGTCTAATGGTGAAAACGTGCAGTTAATTTAGATGAGTACATCAAAAAATTAACTTTGCCTCCTTCACTGCAATGCATTTTGTAGGTGCTCTATTAAGTAGGCCACATGTGTACTCTTTTTGCTACATGTTGTGCTACTGTCTGTTTCATTGAATATCACGCATGTATTCACGGAGATATGGTACAAATTGTGGACTATGACCCTATGTCATGGCTGCCAACTGAAGATTAATGTCACCCATTAGTGCTCACTGTTTTTATGGTACATCTTAAGACTGCTTGTATCTCTCTTCCCTCTACTGCCTTTTATAACTGTTAAGAATCAATGGTAGATAATTTTCCAAGCCTACTGTCATAGTGCTTCTTTGTCAGTTTGAATTTTACTCTCATGGCAATATCTGGTGAAACCTATAAACCAGCACAAATACCTGGACCTTTTTCTGTACTGTACACCATCCATTTCTACCTAACTACCTTTACGACAACTCCTGCAAAAAGAAAAAAAAAAGCAATTGATGAACTTAGAAAGGTGGACTACGAAAATGAATGCATGCATACAGAACATAGGCATTTGTAAGAACCGAATTAGTTAACCAGAATAGGTACAGAGCAATTTCTACATCTCCTGAATCTGGAATGCTGCACACGTAGTTTAAACTGTTGTTAATCTAGATAATGGAGAACAAAATGAGAACCCCTCTGTCTTAAGGCAAACCTAGAGCCAGGTTTGACTGGAGCAGGCATAAGTATCAACGAGGTCTTCTTGTGATATACACCTTTTGCCCCTCCATGTTTACATCATTTCATCTTTAACATAACCCACTTTGGTTTGTTAGGTGGTGACATTGTGGTATAGAGCACCTGAAATTCTTCTTGGTGCAAGGCATTATTCCACCCCTGTTGACATGTGGTCAGTTGGTTGCATTTTTGCTGAAATGGTGAATCAGAAGCCACTATTTCCTGGAGATTCTGAGATTGATGAACTCTTTAAGATTTTCAGGTCTTAATTTTCAAATGTTATTAAGTCTTCATGTTCTTCCATGTTTCTGAACAAAGACAGGAAGACCTAACACTGCTCTATACATTTTCATGTGTTCATGTCAATGAAGTATTATGGGCACTCCAAATGAAGAAACTTGGCCAGGTGTTGCTTCACTACCTGACTACATATCAACTTTCCCAAAGTGGCCATCTGTGGTAAATCATGAATGACTTTTGTTATTACTCTTAAAAATTAATATAGTTTGAATATGTGGATAGAGGCAAAAATAAAATCATGCACTGTGATCCTTGCAATCACGTTATGACAGTGCACCATTTTTTTTATTGGGATGCTGGATGTTTTTGGTTCTAACATAGTGTCCATGTTGCAGGATCTTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTCTCTGTAAGTGACCTGTGAATATTTTTGGATTCGATTATGCAACTCATGTTATCATATGATTTCCCTAGAGACAGTCCATTGTTTGTGTTCTATATATTCAGCTGTTGATATTTGAGTTGCTTAGTGAATTCTTGGGATTTTATACCAGGGTTCTATAATTGAGTTCCCAAATTAATTCAGGCACACAAATGTACCCGTTTGTTTTCTTTAGTACATACCTCCATGCTGTGTAAGCAGTATAGTAGATAGCGGGCGCAGCTTGATTGTCAGGATGTAGCCATGTATTCATTTCTCTTGTAATGTTGGTCCTGGTGCACTTTGTTAGTTGTATGTAGGCAAGGGAATCCTCTAGTATAGATATTGCAGTTTCTCCATCCTCATTATATGGCTGTATCGCCATCTACATTGAACATCAAACAGAAGATTGCATAGCTTGTTGTATGAATGTTAGAAGTCTTGCATTTGGGCTGCAATCTGCGTATGAATTTATTATTTTTTTTAAATAAAGTTGTATGAAGCACTATATTCCAAATCTATCAGTGACATTATTTTCTTGGCATCCTTTAATTGTCAGTTGATATGCATCCATAGCCTTGCTGACTGCTATGTTTGCCTCATGCAGAAAATGCTCCGTTTAGATCCAAGCAAAAGAATCAATGCCCGTGCTGCCCTCGAGCACGAGTACTTCAAGGACCTGGAAGTGGCGTAGATTATGCCTCATCTTGTCCATTTGTAAATTAAGATTGCATTGTTTGCTCAGCCGAGTTCTTTTTTGGCTTTCCTTAATCTAAGTTGGTGTGCTCCTCCCCCAACTCTATTTTTGCCCTTTTGGTTGTGTAGAGATGAGAACAGAAGGTACCTCCTGGCTATCCCTCTGTGTAATTCAAGCCAATTGAAAGATCCTTATTGCGGGAGCTCTACATTGC
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| CDS seq | ATGCCACAAGCCCAACCCAATTCATCCCCAAGTCCACCACCACACACACACACACACGCACACCACTCCTCTCCCCACAACCCATCCACTCCCACGCCGCCGCCGCCGCCCGGATCGCCGCGAGATGGAGCAGGTGAGCACCCCTCGACCTCCGCGATGACGATGCCCTTTGCTGTATCCGATCCATCCGCGAGCGTGGAGGAAATGGTCGCTGCTGCTGCTGCTGATGATGAGTGTGTTTGTGTGTGGCTGGAGGAGCAGTACGAGAAGGTGGAGAAGATCGGGGAGGGGACGTACGGGGTGGTGTACAAGGGCAAGCACCGGCATACCAACGAGACGATCGCGCTCAAGAAGATCCGCCTGGAGCAGGAGGACGAGGGCGTCCCCTCCACCGCCATCCGCGAGATCTCGCTGCTCAAGGAGATGCAGCATCGCAACATCGTCAGGCTGCAGGACGTCGTGCACAAGGAGAAATGCATATACCTCGTCTTCGAGTACCTCGACCTTGACCTCAAGAAGCACATGGACTCATCCCCGGATTTCAAGAACCACCGCATAGTCAAATCGTTCCTCTACCAGATTCTCCGGGGCATTGCGTACTGCCACTCGCACCGTGTTCTCCACCGAGATTTGAAGCCCCAGAACCTGCTGATAGATCGGCGTACCAACTCATTGAAGCTCGCGGACTTTGGGTTGGCCAGGGCATTTGGCATTCCTGTCCGGACATTTACTCACGAGGTGGTGACATTGTGGTATAGAGCACCTGAAATTCTTCTTGGTGCAAGGCATTATTCCACCCCTGTTGACATGTGGTCAGTTGGTTGCATTTTTGCTGAAATGGTGAATCAGAAGCCACTATTTCCTGGAGATTCTGAGATTGATGAACTCTTTAAGATTTTCAGTATTATGGGCACTCCAAATGAAGAAACTTGGCCAGGTGTTGCTTCACTACCTGACTACATATCAACTTTCCCAAAGTGGCCATCTGTGGATCTTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTCTCTAAAATGCTCCGTTTAGATCCAAGCAAAAGAATCAATGCCCGTGCTGCCCTCGAGCACGAGTACTTCAAGGACCTGGAAGTGGCGTAG
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| Protein seq | MPQAQPNSSPSPPPHTHTHAHHSSPHNPSTPTPPPPPGSPRDGAGEHPSTSAMTMPFAVSDPSASVEEMVAAAAADDECVCVWLEEQYEKVEKIGEGTYGVVYKGKHRHTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHKEKCIYLVFEYLDLDLKKHMDSSPDFKNHRIVKSFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGARHYSTPVDMWSVGCIFAEMVNQKPLFPGDSEIDELFKIFSIMGTPNEETWPGVASLPDYISTFPKWPSVDLATVVPTLDSSGLDLLSKMLRLDPSKRINARAALEHEYFKDLEVA |
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| Function | Cyclin-dependent kinase A-2 [UniProtKB/Swiss-Prot:P29619] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0123100 | OsNip_02t0123100-01 | Chr02 | 1207635 | 1211101 | + | RAP2018-11-26 | ||
| CDS seq | ATGCCACAAGCCCAACCCAATTCATCCCCAAGTCCACCACCACACACACACACACACGCACACCACTCCTCTCCCCACAACCCATCCACTCCCACGCCGCCGCCGCCGCCCGGATCGCCGCGAGATGGAGCAGGTGAGCACCCCTCGACCTCCGCGATGACGATGCCCTTTGCTGTATCCGATCCATCCGCGAGCGTGGAGGAAATGGTCGCTGCTGCTGCTGCTGATGATGAGTGTGTTTGTGTGTGGCTGGAGGAGCAGTACGAGAAGGTGGAGAAGATCGGGGAGGGGACGTACGGGGTGGTGTACAAGGGCAAGCACCGGCATACCAACGAGACGATCGCGCTCAAGAAGATCCGCCTGGAGCAGGAGGACGAGGGCGTCCCCTCCACCGCCATCCGCGAGATCTCGCTGCTCAAGGAGATGCAGCATCGCAACATCGTCAGGCTGCAGGACGTCGTGCACAAGGAGAAATGCATATACCTCGTCTTCGAGTACCTCGACCTTGACCTCAAGAAGCACATGGACTCATCCCCGGATTTCAAGAACCACCGCATAGTCAAATCGTTCCTCTACCAGATTCTCCGGGGCATTGCGTACTGCCACTCGCACCGTGTTCTCCACCGAGATTTGAAGCCCCAGAACCTGCTGATAGATCGGCGTACCAACTCATTGAAGCTCGCGGACTTTGGGTTGGCCAGGGCATTTGGCATTCCTGTCCGGACATTTACTCACGAGGTGGTGACATTGTGGTATAGAGCACCTGAAATTCTTCTTGGTGCAAGGCATTATTCCACCCCTGTTGACATGTGGTCAGTTGGTTGCATTTTTGCTGAAATGGTGAATCAGAAGCCACTATTTCCTGGAGATTCTGAGATTGATGAACTCTTTAAGATTTTCAGTATTATGGGCACTCCAAATGAAGAAACTTGGCCAGGTGTTGCTTCACTACCTGACTACATATCAACTTTCCCAAAGTGGCCATCTGTGGATCTTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTCTCTAAAATGCTCCGTTTAGATCCAAGCAAAAGAATCAATGCCCGTGCTGCCCTCGAGCACGAGTACTTCAAGGACCTGGAAGTGGCGTAG
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| Protein seq | MPQAQPNSSPSPPPHTHTHAHHSSPHNPSTPTPPPPPGSPRDGAGEHPSTSAMTMPFAVSDPSASVEEMVAAAAADDECVCVWLEEQYEKVEKIGEGTYGVVYKGKHRHTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHKEKCIYLVFEYLDLDLKKHMDSSPDFKNHRIVKSFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGARHYSTPVDMWSVGCIFAEMVNQKPLFPGDSEIDELFKIFSIMGTPNEETWPGVASLPDYISTFPKWPSVDLATVVPTLDSSGLDLLSKMLRLDPSKRINARAALEHEYFKDLEVA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0123100 | OsNip_02t0123100-02 | Chr02 | 1207649 | 1209243 | + | RAP2018-11-26 | ||
| CDS seq | CCCAATTCATCCCCAAGTCCACCACCACACACACACACACACGCACACCACTCCTCTCCCCACAACCCATCCACTCCCACGCCGCCGCCGCCGCCCGGATCGCCGCGAGATGGAGCAGGTGAGCACCCCTCGACCTCCGCGATGACGATGCCCTTTGCTGTATCCGATCCATCCGCGAGCGTGGAGGAAATGGTCGCTGCTGCTGCTGCTGATGATGAGTGTGTTTGTGTGTGGCTGGAGGAGCAGTACGAGAAGGTGGAGAAGATCGGGGAGGGGACGTACGGGGTGGTGTACAAGGGCAAGCACCGGCATACCAACGAGACGATCGCGCTCAAGAAGATCCGCCTGGAGCAGGAGGACGAGGGCGTCCCCTCCACCGCCATCCGCGAGATCTCGCTGCTCAAGGAGATGCAGCATCGCAACATCGTCAGGTGA
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| Protein seq | PNSSPSPPPHTHTHAHHSSPHNPSTPTPPPPPGSPRDGAGEHPSTSAMTMPFAVSDPSASVEEMVAAAAADDECVCVWLEEQYEKVEKIGEGTYGVVYKGKHRHTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVR |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0123100 | OsNip_02t0123100-03 | Chr02 | 1207654 | 1211091 | + | RAP2018-11-26 | ||
| CDS seq | ATGGAGCAGTACGAGAAGGTGGAGAAGATCGGGGAGGGGACGTACGGGGTGGTGTACAAGGGCAAGCACCGGCATACCAACGAGACGATCGCGCTCAAGAAGATCCGCCTGGAGCAGGAGGACGAGGGCGTCCCCTCCACCGCCATCCGCGAGATCTCGCTGCTCAAGGAGATGCAGCATCGCAACATCGTCAGGCTGCAGGACGTCGTGCACAAGGAGAAATGCATATACCTCGTCTTCGAGTACCTCGACCTTGACCTCAAGAAGCACATGGACTCATCCCCGGATTTCAAGAACCACCGCATAGTCAAATCGTTCCTCTACCAGATTCTCCGGGGCATTGCGTACTGCCACTCGCACCGTGTTCTCCACCGAGATTTGAAGCCCCAGAACCTGCTGATAGATCGGCGTACCAACTCATTGAAGCTCGCGGACTTTGGGTTGGCCAGGGCATTTGGCATTCCTGTCCGGACATTTACTCACGAGGTGGTGACATTGTGGTATAGAGCACCTGAAATTCTTCTTGGTGCAAGGCATTATTCCACCCCTGTTGACATGTGGTCAGTTGGTTGCATTTTTGCTGAAATGGTGAATCAGAAGCCACTATTTCCTGGAGATTCTGAGATTGATGAACTCTTTAAGATTTTCAGTATTATGGGCACTCCAAATGAAGAAACTTGGCCAGGTGTTGCTTCACTACCTGACTACATATCAACTTTCCCAAAGTGGCCATCTGTGGATCTTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTCTCTAAAATGCTCCGTTTAGATCCAAGCAAAAGAATCAATGCCCGTGCTGCCCTCGAGCACGAGTACTTCAAGGACCTGGAAGTGGCGTAG
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| Protein seq | MEQYEKVEKIGEGTYGVVYKGKHRHTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHKEKCIYLVFEYLDLDLKKHMDSSPDFKNHRIVKSFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGARHYSTPVDMWSVGCIFAEMVNQKPLFPGDSEIDELFKIFSIMGTPNEETWPGVASLPDYISTFPKWPSVDLATVVPTLDSSGLDLLSKMLRLDPSKRINARAALEHEYFKDLEVA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.352088 | 0.918872 | 3.636611 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0118400 | SBH | 0.528642 | 2.203038 | 12.716155 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g03060 | RBH | 0.104297 | 0.332567 | 0.694601 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0123100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0001760 | RBH | 0.131927 | 16.927444 | 3.833244 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0001830 | RBH | 0.0 | 4.603415 | 4.998093 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0001780 | RBH | 0.292462 | 6.700109 | 2.611965 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0001760 | RBH | 0.045210 | 0.572994 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0001790 | RBH | 2.032827 | 9.512526 | 12.971893 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0020100 | RBH | 3.696376 | 6.8534955 | 3.5882155 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0001740 | RBH | 0.0 | 1.758102 | 0.482506 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0020500 | RBH | 4.0848815 | 2.2377325 | 18.340115 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0001760 | RBH | 0.219609 | 0.029346 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0001700 | RBH | 0.0 | 10.433425 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0001770 | RBH | 1.489087 | 17.445450 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0001860 | RBH | 0.000000 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0001820 | RBH | 0.000000 | 6.143794 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G001800 | RBH | 0.0 | 5.599486 | 3.572001 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0001750 | RBH | 0.000000 | 7.633446 | 8.740622 |
