Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_02g0001750 | OGI:02004540 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr02:1184912-1188515 | ||||||||
| Gene Symbol | CDC2-2, cdc2Os-2, CDC2Os-2, CDKA-2, CDKA;2, Orysa;CDKA;2, Rcdc2-2, OsCDKA;2, OsCDKA2, CDKA2 | ||||||||||
| DNA seq | atgaggagagagcgacaatgccacaagcccaaCccaattcatccccaagtccaccaccacacaCacacacgcacaccactcctctCcccacaaCccatccactcccacgccgccgccgccgcccGgatcgccgcgagatggagcaggtgagcacctctcgacctccgcgatgacgatgccctttgctgtatCcgatccatccgcgagcgtggaggaaatggtcgctgctgctgCTGCTgatgatgagTgtgtttgtgtgtggctggaggagcagtacgagAaggtggagaagatcgggGAagggacgtacggggtggtgtacaagggcaagcaccggcataccaacgagacgatcgcgctcaagaagatccgcctggagcaggaggacgagggcgtcccctccaccgccatccgcgagatctcgctgctcaaggagatgcagcatcgcaacatcgtcaggtgacccacctcctccctccctgctagctccatctctctctgcggctgttggTtgggtgggtgggtggattgatggattgcgtgatttgcgatttgtgaatgcTttgggaatttggattgtgccgtgcaggctgcaggacgtcgtgcacaaggagaaatgcatatacctcgtcttcgagtacctcgaccttgacctcaagaagcacatggactcatccccggatttcaagaaccaccgcatagtcaaagtaagatgttgaaactaacatcctcttttcattgatgcaagtatcacgccatttaGtgatagtaacttcgctgaaagtgtgggatgagctagccattgcttccattttgtgcatggtttatgttgaaacgggaaatgtgatgctgtccTttgcgcctgtgtgcagtcgttcctctaccagAttctccggggcattgcgtactgccactcgcaccgtgttctccaccgagatttgaaaccccagaacctgctgatagatcggcgtaccaactcattgaagctcgcggactttgggttggccagggcatttggCattCctgtccggacaTttactcacgaggTacattttacagcccgacacgtttttcgtttggtacactgtgatttatagtccttgcacatcacactaCagaagaggggaacTgtctaatggtgaaaacgtgcagTtaatttagatgagtacatcAaaaaattaactttgcctccttcactgcaatgcaTtttgtaggtgctctattaagtaggccacatgtgtactctttttgctacatgttgtgctactgtctgtttcattgaatatCAcgcatgtattcacggagatatGgtacaaattgtggactatgaccctatgtcatggctgccaactgaagattaatgtcacccattagtgctcactgTttttatggtacatcTtaagactgcttgtatctctcttccctctactgccTtttataactgttaagaatcaatggtagataattttCcaagcctactgtcatagtgcttctttgtcagtttgaattttactctcatggcaatatctggtgaaacctataaaccagcacaaatacctggacctttttctgtactgtacaccatccatttctacctaactacctttacgacaactcctgcaaaaAGaaaaaaaaaaGcaattgatgaacttagaaaggtggactacgaaaatgaatgcatgcatacagaacataggcatttgtaagaaccgaattagttaaccagaataggtacagagcAatttctacatctcctgaatctggaatgctgcacacgtagtttaaactgttgttaatctagataatggagaacaaaatgagaacccctctgtcttaaggcaaacctagagccaggtttgactggagcaggcataagtatcaacgaggtcttcttgtgatatacaccttttgcccctccatgtttacatcatttcatctttaacataacccactttggtttgttaggtggtgacatTGTggtatagagcacctgaaattcTTcttggtgcaaggcattattccacccctgttgacatgtggtcagttggttgcatttttgctgaaatggtgaatcagaagccactatttcctggagattCtgagattgatgaactctttaagattttcaggtcttaattttcaaatgttattaagtcttcatgttcttccatgtttctgaacaaagacaggaagacctaacactgctctatacattttcatgtgttcatgtcaatgaagtattatgggcactccaaatgaagaaacttggccaggTgttgcttcactacctgactacatatcaactttcccaaagtggccatctgtggtaaatcatgaatgacttttgttattactcttaaaaattaatatagtttgaatatgtggatagaggcaaaaataaaatcatgcgctgtgatccttgcaatcacgttatgacagtgcaccaTTttttttattgggatgctggatgTttttggttCtaacatagtgtccatgttgcaggatcttgcaaccgtggtcccaacacttgattcttcaggactcgatcttctctctgtaagtgacctgtgaataTttttggattcgattatgcaactcatgTtatcatatgatttccctagagacagtccattgtttgtgttctatatattcagctgttgataTttgagttgcttaGtgaaTtCttgggattttataccagggttctataattgagTtcccaaaTtaattcaggcacacaaatgtacccgtttgttttctttagtacatgcctccatgctgtgtaagcagtatagtagatagcGggcgcagcttgattgtcaggatgtagccatgtaTtcatttctcttgtaatgttggtCctggtgcactttgttagttgtatgtaggcAagggaatcctctagtatagatattgcagtttctccatcctcattatatggctgtaccgccatctacattgaacatcaaacagaagattgcatagcttgttgtatgaatgttagaagtcttgcatttgggctgcaatctgcgtatgaatttattaTttttttttaaataaagttgtatgaagcactatattccaaatctatcagtgacattattttcttggcatcctttaattgtcagttgatatgcatccatagccttgctgacttctatgtttgcctcatgcagaaaatgctccgtttagatccaagcaaaagaatcaatgcccgtgctgccctcgagcacgagtacttcaaggacctggaagtggcgtagattatgCctcatcttgtccaTttgtaaattaagattgcattgtttgctcagccgagttcttttttggctttccttaatctaagttggtgtgctcctcccccaactctatttttgcccttttggttgtgtagagatgagaacagaaggtacctcctggctatccctctgtgtaattcaagccaattgaaagatccttattgcgggagctctacattgcaattttgctctcttgcctatatccagttccaggactgctgggattttaagctgccaatgtggcatggacttctccagtcattcaaccagttaatttaaactcttttgccaacattttccaactg
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| CDS seq | atggagcagtacgagAaggtggagaagatcgggGAagggacgtacggggtggtgtacaagggcaagcaccggcataccaacgagacgatcgcgctcaagaagatccgcctggagcaggaggacgagggcgtcccctccaccgccatccgcgagatctcgctgctcaaggagatgcagcatcgcaacatcgtcaggctgcaggacgtcgtgcacaaggagaaatgcatatacctcgtcttcgagtacctcgaccttgacctcaagaagcacatggactcatccccggatttcaagaaccaccgcatagtcaaatcgttcctctaccagAttctccggggcattgcgtactgccactcgcaccgtgttctccaccgagatttgaaaccccagaacctgctgatagatcggcgtaccaactcattgaagctcgcggactttgggttggccagggcatttggCattCctgtccggacaTttactcacgaggtggtgacatTGTggtatagagcacctgaaattcTTcttggtgcaaggcattattccacccctgttgacatgtggtcagttggttgcatttttgctgaaatggtgaatcagaagccactatttcctggagattCtgagattgatgaactctttaagattttcagtattatgggcactccaaatgaagaaacttggccaggTgttgcttcactacctgactacatatcaactttcccaaagtggccatctgtggatcttgcaaccgtggtcccaacacttgattcttcaggactcgatcttctctctaaaatgctccgtttagatccaagcaaaagaatcaatgcccgtgctgccctcgagcacgagtacttcaaggacctggaagtggcgtag
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| Protein seq | MEQYEKVEKIGEGTYGVVYKGKHRHTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHKEKCIYLVFEYLDLDLKKHMDSSPDFKNHRIVKSFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGARHYSTPVDMWSVGCIFAEMVNQKPLFPGDSEIDELFKIFSIMGTPNEETWPGVASLPDYISTFPKWPSVDLATVVPTLDSSGLDLLSKMLRLDPSKRINARAALEHEYFKDLEVA |
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| Function | Cyclin-dependent kinase A-2 [UniProtKB/Swiss-Prot:P29619] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0001750 | OsNaBo_02g0001750.01 | Chr02 | 1184912 | 1188515 | + | NAM | ||
| CDS seq | atgaggagagagcgacaatgccacaagcccaaCccaattcatccccaagtccaccaccacacaCacacacgcacaccactcctctCcccacaaCccatccactcccacgccgccgccgccgcccGgatcgccgcgagatggagcagcgtggaggaaatggtcgctgctgctgCTGCTgatgatgagTgtgtttgtgtgtggctggaggagcagtacgagAaggtggagaagatcgggGAagggacgtacggggtggtgtacaagggcaagcaccggcataccaacgagacgatcgcgctcaagaagatccgcctggagcaggaggacgagggcgtcccctccaccgccatccgcgagatctcgctgctcaaggagatgcagcatcgcaacatcgtcaggctgcaggacgtcgtgcacaaggagaaatgcatatacctcgtcttcgagtacctcgaccttgacctcaagaagcacatggactcatccccggatttcaagaaccaccgcatagtcaaatcgttcctctaccagAttctccggggcattgcgtactgccactcgcaccgtgttctccaccgagatttgaaaccccagaacctgctgatagatcggcgtaccaactcattgaagctcgcggactttgggttggccagggcatttggCattCctgtccggacaTttactcacgaggtggtgacatTGTggtatagagcacctgaaattcTTcttggtgcaaggcattattccacccctgttgacatgtggtcagttggttgcatttttgctgaaatggtgaatcagaagccactatttcctggagattCtgagattgatgaactctttaagattttcaggtcttaa
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| Protein seq | MRRERQCHKPNPIHPQVHHHTHTRTPLLSPQPIHSHAAAAARIAARWSSVEEMVAAAAADDECVCVWLEEQYEKVEKIGEGTYGVVYKGKHRHTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHKEKCIYLVFEYLDLDLKKHMDSSPDFKNHRIVKSFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGARHYSTPVDMWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0001750 | OsNaBo_02g0001750.02 | Chr02 | 1184928 | 1188515 | + | NAM | ||
| CDS seq | atggagcagtacgagAaggtggagaagatcgggGAagggacgtacggggtggtgtacaagggcaagcaccggcataccaacgagacgatcgcgctcaagaagatccgcctggagcaggaggacgagggcgtcccctccaccgccatccgcgagatctcgctgctcaaggagatgcagcatcgcaacatcgtcaggctgcaggacgtcgtgcacaaggagaaatgcatatacctcgtcttcgagtacctcgaccttgacctcaagaagcacatggactcatccccggatttcaagaaccaccgcatagtcaaatcgttcctctaccagAttctccggggcattgcgtactgccactcgcaccgtgttctccaccgagatttgaaaccccagaacctgctgatagatcggcgtaccaactcattgaagctcgcggactttgggttggccagggcatttggCattCctgtccggacaTttactcacgaggtggtgacatTGTggtatagagcacctgaaattcTTcttggtgcaaggcattattccacccctgttgacatgtggtcagttggttgcatttttgctgaaatggtgaatcagaagccactatttcctggagattCtgagattgatgaactctttaagattttcagtattatgggcactccaaatgaagaaacttggccaggTgttgcttcactacctgactacatatcaactttcccaaagtggccatctgtggatcttgcaaccgtggtcccaacacttgattcttcaggactcgatcttctctctaaaatgctccgtttagatccaagcaaaagaatcaatgcccgtgctgccctcgagcacgagtacttcaaggacctggaagtggcgtag
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| Protein seq | MEQYEKVEKIGEGTYGVVYKGKHRHTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHKEKCIYLVFEYLDLDLKKHMDSSPDFKNHRIVKSFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGARHYSTPVDMWSVGCIFAEMVNQKPLFPGDSEIDELFKIFSIMGTPNEETWPGVASLPDYISTFPKWPSVDLATVVPTLDSSGLDLLSKMLRLDPSKRINARAALEHEYFKDLEVA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr02 | 1185057 | 1185186 | + | OsNaBo_02g0001750.01 | OsNaBo_02g0001750.01,OsNaBo_02g0001750.02 | All |
| RI | Chr02 | 1186877 | 1187237 | + | OsNaBo_02g0001750.01 | OsNaBo_02g0001750.01,OsNaBo_02g0001750.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 7.633446 | 8.740622 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0123100 | RBH | 0.352088 | 0.918872 | 3.636611 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g03060 | RBH | 0.104297 | 0.332567 | 0.694601 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0123100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0001760 | RBH | 0.131927 | 16.927444 | 3.833244 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0001830 | RBH | 0.0 | 4.603415 | 4.998093 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0001780 | RBH | 0.292462 | 6.700109 | 2.611965 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0001760 | RBH | 0.045210 | 0.572994 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0001790 | RBH | 2.032827 | 9.512526 | 12.971893 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0020100 | RBH | 3.696376 | 6.8534955 | 3.5882155 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0001740 | RBH | 0.0 | 1.758102 | 0.482506 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0020500 | RBH | 4.0848815 | 2.2377325 | 18.340115 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0001760 | RBH | 0.219609 | 0.029346 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0001700 | RBH | 0.0 | 10.433425 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0001770 | RBH | 1.489087 | 17.445450 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0006760 | RBH | 0.000000 | 0.0 | 1.091777 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0001820 | RBH | 0.000000 | 6.143794 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G001800 | RBH | 0.0 | 5.599486 | 3.572001 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0001390 | SBH | 0.0 | 37.880344 | 7.176113 |
