Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0891601 | OGI:01114870 | 6/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:38761910-38763273 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGAAGGATTCTCCCTTACAAGAGCTGTGTGACAGTGTGAGTTCATCTATTGCAGGCGGAGGTTTCTGCTTTTTTTGATCGATCGGTGAGTTTTCTGAAACACCTTCTTCTATTTCAAGTTTGATTCTATTATACACAACGGAGCATATTGGGTGAGTGAAAACAGCAAAATATAATTTCTAGTTCATTTCTAGAAATAGCTCATTTCTAGGAGGTGCAACTTTTATCGGTGGAAATAGTTCATTTCTAGTCCGTGTCTGTAATGTCTTTTGACACCGGGCTTCTCTTCTGGTTGCTGCTCCTGAGCAGTTCATCGTTGTGTTTTGGTTCTGAACTTGATATCCAATGCCTGAAGAGTGTAAAGCGATCGCTGATCGATCCTAGTGGAATACTCAGATCGTCATGGAAATTTTCTCAGGATGGAACCACAAATTCCATATGCAATTTTATGGGCGTGATATGCTGGAACCCTGACGAAAACAGGATTCTAGGTTTGTCTCTCGGCAGTCTAGGACTGCAAGGCCAATTTCCTCGAGGTCTTGAGCATTGTACATCTCTGGTTAGACTGGACTTGTCAAATAACAGTCTTTCAGGGCCCATCCCTTCTGGCATCTCATGGCAGCTGCCGGATTTGTCATCTCTGAACCTCTCCTACAATCGTTTTTCAGGCGAAATACCTGTTAATATCAGTGAGATGACATATCTATATAGTATCGGCCTTCAGCACAACAAGCTGACCGGTTCAATTCCAGGGAAATTCGCTCTGCTTTCTCGGTTAGAGTCGTTCAATGTTTCAGACAATTTACTGTCTGGCCCTATTCCAGTTGCTTTATCAAAGTTTTCGACTTCATGCTTTTCTGGGAACCAAGGTCTCTGCGGTGTACCGTTTGATAGTTGCAGCACAAGCTACGGTGACTACAGTATCGGAATAATCGGAGCGGCCGTCGGGTTCGTCGTGGGTTTTGTGGGAGCCTTGTACATCTCTCACTGCCTCTTCTTTCTACGGGACGCGCCGGCCCTACGTCTATCACACACATGAGATGTATTTGTTCTGAAACCAAATGAGATTTCTGGAGGCCAAATGAGCACTCCAAAAGCAGTCAGTACTCCCTCCGTTTCACAATATAAGTCATTTTAACATTTTTCACATTCATATTGATGCTAATAAATCTAAATAGAAATATATGTCTAGATTCATTAGCATCAATATAAATATGGTAAATGTTAGAATGACTTATATTGTGAAACGGAGGAATTAGTATCTTTTTCCCCTTAAGCAGTATTGCAGCAATATGTATAACCAGGCTTAGCAAGGGCCGGTGTTTCCGTGTTCACATGGGAAAAATGTTCAGCCTACTTCCCGAT
More
|
||||||||||
| CDS seq | ATGTCTTTTGACACCGGGCTTCTCTTCTGGTTGCTGCTCCTGAGCAGTTCATCGTTGTGTTTTGGTTCTGAACTTGATATCCAATGCCTGAAGAGTGTAAAGCGATCGCTGATCGATCCTAGTGGAATACTCAGATCGTCATGGAAATTTTCTCAGGATGGAACCACAAATTCCATATGCAATTTTATGGGCGTGATATGCTGGAACCCTGACGAAAACAGGATTCTAGGTTTGTCTCTCGGCAGTCTAGGACTGCAAGGCCAATTTCCTCGAGGTCTTGAGCATTGTACATCTCTGGTTAGACTGGACTTGTCAAATAACAGTCTTTCAGGGCCCATCCCTTCTGGCATCTCATGGCAGCTGCCGGATTTGTCATCTCTGAACCTCTCCTACAATCGTTTTTCAGGCGAAATACCTGTTAATATCAGTGAGATGACATATCTATATAGTATCGGCCTTCAGCACAACAAGCTGACCGGTTCAATTCCAGGGAAATTCGCTCTGCTTTCTCGGTTAGAGTCGTTCAATGTTTCAGACAATTTACTGTCTGGCCCTATTCCAGTTGCTTTATCAAAGTTTTCGACTTCATGCTTTTCTGGGAACCAAGGTCTCTGCGGTGTACCGTTTGATAGTTGCAGCACAAGCTACGGTGACTACAGTATCGGAATAATCGGAGCGGCCGTCGGGTTCGTCGTGGGTTTTGTGGGAGCCTTGTACATCTCTCACTGCCTCTTCTTTCTACGGGACGCGCCGGCCCTACGTCTATCACACACATGA
More
|
||||||||||
| Protein seq | MSFDTGLLFWLLLLSSSSLCFGSELDIQCLKSVKRSLIDPSGILRSSWKFSQDGTTNSICNFMGVICWNPDENRILGLSLGSLGLQGQFPRGLEHCTSLVRLDLSNNSLSGPIPSGISWQLPDLSSLNLSYNRFSGEIPVNISEMTYLYSIGLQHNKLTGSIPGKFALLSRLESFNVSDNLLSGPIPVALSKFSTSCFSGNQGLCGVPFDSCSTSYGDYSIGIIGAAVGFVVGFVGALYISHCLFFLRDAPALRLSHT |
||||||||||
| Function | Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 [UniProtKB/Swiss-Prot:Q9ASS4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0891601 | OsNip_01t0891601-01 | Chr01 | 38761910 | 38763273 | + | RAP2018-11-26 | ||
| CDS seq | ATGTCTTTTGACACCGGGCTTCTCTTCTGGTTGCTGCTCCTGAGCAGTTCATCGTTGTGTTTTGGTTCTGAACTTGATATCCAATGCCTGAAGAGTGTAAAGCGATCGCTGATCGATCCTAGTGGAATACTCAGATCGTCATGGAAATTTTCTCAGGATGGAACCACAAATTCCATATGCAATTTTATGGGCGTGATATGCTGGAACCCTGACGAAAACAGGATTCTAGGTTTGTCTCTCGGCAGTCTAGGACTGCAAGGCCAATTTCCTCGAGGTCTTGAGCATTGTACATCTCTGGTTAGACTGGACTTGTCAAATAACAGTCTTTCAGGGCCCATCCCTTCTGGCATCTCATGGCAGCTGCCGGATTTGTCATCTCTGAACCTCTCCTACAATCGTTTTTCAGGCGAAATACCTGTTAATATCAGTGAGATGACATATCTATATAGTATCGGCCTTCAGCACAACAAGCTGACCGGTTCAATTCCAGGGAAATTCGCTCTGCTTTCTCGGTTAGAGTCGTTCAATGTTTCAGACAATTTACTGTCTGGCCCTATTCCAGTTGCTTTATCAAAGTTTTCGACTTCATGCTTTTCTGGGAACCAAGGTCTCTGCGGTGTACCGTTTGATAGTTGCAGCACAAGCTACGGTGACTACAGTATCGGAATAATCGGAGCGGCCGTCGGGTTCGTCGTGGGTTTTGTGGGAGCCTTGTACATCTCTCACTGCCTCTTCTTTCTACGGGACGCGCCGGCCCTACGTCTATCACACACATGA
More
|
|||||||
| Protein seq | MSFDTGLLFWLLLLSSSSLCFGSELDIQCLKSVKRSLIDPSGILRSSWKFSQDGTTNSICNFMGVICWNPDENRILGLSLGSLGLQGQFPRGLEHCTSLVRLDLSNNSLSGPIPSGISWQLPDLSSLNLSYNRFSGEIPVNISEMTYLYSIGLQHNKLTGSIPGKFALLSRLESFNVSDNLLSGPIPVALSKFSTSCFSGNQGLCGVPFDSCSTSYGDYSIGIIGAAVGFVVGFVGALYISHCLFFLRDAPALRLSHT
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0892300 | RBH | 0.138482 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g66740 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0891601 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0043230 | SBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0042840 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0043170 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0023540 | SBH | 0.025093 | 0.039633 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0042220 | SBH | 0.000000 | 0.0 | 0.593262 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0638300 | RBH | 0 | 0.055903 | 0.017119 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0041850 | SBH | 0.000000 | 0.000000 | 0.040127 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0639000 | RBH | 0.0654695 | 0.152346 | 0.026026 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0042200 | SBH | 0.026820 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0042140 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0042420 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0042350 | SBH | 0.093275 | 0.0 | 0.097006 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0042210 | SBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G042620 | SBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0042320 | SBH | 0.148601 | 2.075627 | 0.000000 |
