Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNip_01g0837900 OGI:01107240 | 15/16 Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) Chr01:35923866-35929395
Gene Symbol -
DNA seq

GAAAGAACACATGCAGTAGTATATATTAGTACAGGGTTGTTGGTTCGAAACCTGTGATCAAAACCGCTGCTCGCCGTCTTCAAACAAACGCGATCTCTGTAACATATGATGATCGAAGCAAATACGACTATACGAGAATGCCAGGTTCGAAACCTGTGATCAAACCTGCTGCTCGCCGTCTTCGAACGCGATCTCATGTAACATGACGATGGAAGCGTTGGCGCCCGTTCCGAAGGGTTAGTATATCATACCTTACAGAGTTACAGGCTCTTGTACAATTGACCCGCTGCTACAGCTTTGGAGGCGATCTTTGGGCTGACGTCACGTAGCCCAATGAGTAAAACATTTACCAGCTGCTCATCCATTCACAGTAGGAAGCAGCAGCTCTCCAAATCCACCTTCGATGAGTAAAATCTTTCGCATGTCCAAAACGAGCCTAAACTACCAGCATTCTGGGGTTAGTCTATCTTGCCTATAGAATGATTTCATCTTTAATCAACAAAACAAGCCGGACTAATTTTGTTTCACTAGTGTTGACACTCGATGTTGATAAATTACCTTCAACGGTAGTTTCACTCAATTGCAAAAATGAAAACGATAAATTAAAAAAAATACTCGTCCTTGCTTAAATATAGTTGTAAAACATTTTCCAGCAGATTTCAAATACTCAGTTTGTCAAAGAAGATATTGTAGCAGCCAATAAGATGTTATCAGACCAAATAACAGTCTTTTTTTTTGCCAGAAGATAACTTTTGAGTAATGAGCCTTTATAGAAAGAAGAAACAAGCAATAGATGAATACAATCATCACATCACTAAAGTTTGATAAAGGAAATGACTTTTGTAAGATATTAAGAACAAGCTCACCTGGCGCAAACGATAGACACAGGTTGAGTATAGTTTTAAGCTCAAAACCCACAAGGATTTATCTAACAAACATCTCCAATCCAAGAGCTTGGTGGCTGCTAGTAATATGGGAACCAGTAAGATTTTAAAGCCAGTACTTTACGGTATATTCAGGTAAATTAGATATATATCAGCTGCTATCAAGGATTCTGGACTTTAGTCACAGTTGACAATATTTCAAAGTTGAGCACATCTTGAGATTTAGACTACTGTCCACAATTTCAAAGTTGTCGCAAACCTTTCCAAGCCAAGTGTCAGACTCAAAAGCTCAGTTAATTACCAAACTTTTATCCAACACCCGAGACTTGTTTTAAGAAATATGACCAGTCACAAGCAAAACTCACCAGGGTGTAACTTTAACGTCCGGTTAGTTTCCAGGGCTAATCATGCATTTCAAGGTAAAATAGAATGGACATGAAGGTCAAGTGAACAGGCCATCACCAATTTTCACGAGAAATACTGAGATCCTAAATGCACATAAAATTATATTGATAAGCCTATCTCCACACCAAACAGGACATGGTCAGAATGCAATGCTCACCTTATATCACCAGCTCACCATCAAATACAGTGTACCAATCTTTCATGAGAGCCACTGGCATTCCCTCTATCCTCAATTGACTCCACCAAGTTGAGATTTCTGCATGCTACCTGCTAGTACTGGGCAGTCTTGCAAAAATTAGTATGAAGTAAAATGTGAGGTTTAAAGACAGGAACTTGTAAGAATTGAAAAATATCTCCCAGTTAAAATAAATCGGCAGTCGTAGAACTCTGTCTATATACAACAGTTACCTTGCACATCATCGAACAGAATGCGAGTTAGCACATTTCATTTTTGTGGAACATCTTCACTTTTTTTTTGGGTGGTTCTTACACATCAAAATGAAGAAATACAGCATTGAGCATTTTAATCTCAGTATAGTCTCAGTAACCACATCTTCTGTGGCATCTTGTAAAGAACGGGTGTTGAAGAGCTTCACGTGCCTTTAGGCGCGCATCAGGATCATACCGAAGAAGGCCTTGAAGAAGATCTATAAGATCTCCAGCAGAATGATCAACATGTTGCATTACCAGATTCTGCATGAGTTAGCACAATTCGAGTGTCAAGAGGATACCACCTATGAGCGACACTTGGCAAAGAGGGGAAAATGCTAAGAGGAACATACTGACTACATCAGATAACAAAGTACCTGCAGACGAGGCAATTTCCAGACTGCCTTCAGGCTTTCCCGTGAGGCAGCCCCCTCTGGCCAGTCCAACCTTAATCCACGTCTGAAATACTTTTCAGCACGGCGACTGTAAAAAAGAAGTAACAAGTACATGCAAGTGATTGATAATTTGAAAGAACTTCAGATGAAACTCAGCAGCAACCTAAGCCTAGATGTAAACCATCTTATCTTAGATTATAATAAATCATGAAACTATAACGAAGACCTTGTATACATACTCAGCTCTGACAATCATATGTTTTGGAAGGGGACCTAGAACTCTCTCCATCATAGCCAAATGCTCCAAATTTTCATGTGTTTGAAAGAGAGCTTCACCCTAGTAGAGAAAATCAAAGAGGCAACATATCAATAGGAAGCACTGCAAATTCGCGGAGCCGGCACTGGGCTATAGAGAAAATCAAGGAACTACTCAGGTATAGATAGTGTGAACTAACCGAGCAGAGTTCAACTAAAATGCATCCCACACTCCACAAATCACATGAATAATTCCACCCAAGACCTGCAAATGAAAACAGAGAAAGGAAATAACTAAACAAAGGTACCATAAACAAAACACAGTAATATAATTATGTGTTCCACTTTATAGGGGGGAAATGGAAAAGGATATGATGTTAATACCAAGGATAACTTCAGGGGCACGATAATGCCTTGTTGATACCACATAATTGTGGTCTTGGTGTTCGAATGTTGTACTTCCAAAATCAATCAGCTTGATAGCACTAGATTTTGGAAGATTCTTAAAAAAGGAACCATCCTTTGGGGGCCGTATTGTAACCTTTATGGAAAACAATATAAAAATCAGTAAAAAATAAATGTATGCTCGTACTAATTGACATAATGTAATGGCAACCACAAGTGTTAACGGATAAAATTGCAAAAGATTATAGTTCGAATGACAAAATTTAGTATTGAAGCCACCTTATAATCAGGCACCCGGATAGATTCTGATGAAACAAGGAGAATGTTCTCAGGTTTCAGATCTGTGTGAATAAGTCGCAGGTCATGCATAACTGCAAATATTACAATAAAATAAACATTAGAATAATACTGTTAGGGGCAAGATAAAACAAAACGTTAATTTGCATAACCAACAAACAGCAGAAATTAACTGAATACCCACATGCAACAGACTCTAATATTTGTCTGGCAAATTCCCGAACAAGGTCGATCGGAAATGCACGATAACTATTCTTTCGGAGGAAGTCATATAAGCTTGGTCCGAGCCTCTCAAATACCTGACAAAGTTAGTAATTCAATATTAAATTCTGACCATCCAAAACATGAAAGGAAGCCTTCTTGATGCACATGTACTTACTATACATATATGATTACGATAGTCAAACCAATTCCGTATTTGCACACAGCTGCAGGCATAGAACCATTCATGCAAATCCATCAACTCAATAAAGAGTCAAGACTTAGCAATGACGAAAGTAGTTTGCTTACCGGCTACCAGTAAAATCATGCTTCCCAAGCCTCTGAAGCACATCAATTTCAATCATAGCAGCCTCTCGATATTTCTGAAGGGAGCGCACAATTTTGATAGCCACTGTCTCTTGGTGTTCCAAGTCCCAGCACTCTAAGACTTGTCCAAAAGTCCCTGCAACACAAATTAAGAAAGGTAGTTGTTGGTAACATGTACAAAGGGCAAAACTTTTGCAGCATAAGCATTTATCCTGAACTATTCCTTATAAAATGAAATGTTGAAATTTAGAAAAGGAGGAGCACACTGACCTTCACCCATCTTGCTAAGTATTCTATCTGCAAAGCCATAGACAAGAACAAAGGTTAAACCTCAGAATTATCTCAACCAAAAGAAGCATCGCCAACAAAACATAAGTTCAGTACAGCTGGTAGAGATGCAGGGCAGTTGACAACACAACGGCAATAGATATCAAGAATGCACGACCATTACACAATGTCAGAAGTTATTTGGGCAACGAACAAAGGTATGCAAACATTTTACCCTGATTTAATTGACTGTAAATAATGAATGGTTATTTAATGAGGCTTGAAATGCCATTCAACCCATAATTAGGTGGTTGAAACACGGTGTTGCATTTAACCAGTAACTGACAATCATTAAACAGCTACATAAGTCCCAAATATCAAACAAAATGAAAGTTCTGTGTCCAGTATTTCAACAATTGTGGCAAGATAAACTTACTCCAGAAGAAAAACAGTTTAACAGTCTAACCAAGCAAGCGATCAGAAATGCAAACAAAAACAATAACCCTATGCAATAAATAATACTGAGTTGTGGAAAAATACATCTTGGTGTAAGGTTCTCCCCAACTGCGAAAACATAGTGTCCATCCTTGTCATCTGGCCTCCAGGGAGGCGAAAGATTGCGTGGTGGTCCTGTATAATAGATTGGTGGCGGTGGCAGAAAAGCGGTCGCAAAATTTCCATTGATTAGTTCCTGCCCGCAATATAGCATAGGAATTGCCTACAAAAATAATTAGCCACGTAAATTACTATTAACCATATACATCAAAATTGGTAACAAGCATATAAATTCTAAATGAATAGAAACAACTGCATACTGATCTCCTGTGTTTTCAAAGTTCAATGATATTTACACCCCACTTAGCACCATTAAAGTTATCTATCTGTTTTGTTTGATAGTCCTAAATAGAGAAGTACACCGGGTAACCCATATGTTTGACAGCACTGAATGGACAAATACCTCAAGTAACGGTTGTGTCCCACCAAAAGAGAACAATATCGATTAGCAAAAATAATGACAGAATATCAAACTTTATTAGCAAGTTCCATAAATTTGGCAGCACTTAGGCACATGGAGGTCGTGAGATTGCCCCTTTTCTCCATATTGTTCTTTCGATCAGCAACTGGCTCCGATCCTATCCCACAAATTCACAATATCACATCGATGATCCTCTGCAACAGCGCAGCATATCCCCAATTCCCAAATATGCACACCCAGATCGAACCGCCCCGCTCTAAATCTAGCGAAACCACGACTAGATCTAGCCAAAAACTACCACCGCAACCCACACGCCCGAGAGAGACCGGATCGACGCAGCACATAGCGCATGGATTATACCTTGGGGGGCTGGAACAGCGGGGGCGCGACATCCCAGGCGAGGCGGGGCCGCTTCCGCGGCCGCTTGTCGGCGCCCTGGTGCGGGTACTCGGCGAGCCACTGCGCCTCCATTGCAGAGTCGAAATCGCCAATTAAGCCATCGGCGAGGCCAATCCGGCGGGGGATTTTGGGCGAGGTCGCCGCACGATCCGCGGGAGGAATCGGGATGCGAGGTTGGGGAATTCGGGGAAGAAGCGACGCGAGATTGGGGAAATTTGGAAAGAGGGGGAGGAGGGGAAGCTCGAGGAGGAGGTGGTCTGGTCTGGTGGTGTTCGCGTCCGCGCAACCCT

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CDS seq

ATGGAGGCGCAGTGGCTCGCCGAGTACCCGCACCAGGGCGCCGACAAGCGGCCGCGGAAGCGGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGACCGCTTTTCTGCCACCGCCACCAATCTATTATACAGGACCACCACGCAATCTTTCGCCTCCCTGGAGGCCAGATGACAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCAAGATATAGAATACTTAGCAAGATGGGTGAAGGGACTTTTGGACAAGTCTTAGAGTGCTGGGACTTGGAACACCAAGAGACAGTGGCTATCAAAATTGTGCGCTCCCTTCAGAAATATCGAGAGGCTGCTATGATTGAAATTGATGTGCTTCAGAGGCTTGGGAAGCATGATTTTACTGGTAGCCGCTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATATGTATAGTATTTGAGAGGCTCGGACCAAGCTTATATGACTTCCTCCGAAAGAATAGTTATCGTGCATTTCCGATCGACCTTGTTCGGGAATTTGCCAGACAAATATTAGAGTCTGTTGCATTTATGCATGACCTGCGACTTATTCACACAGATCTGAAACCTGAGAACATTCTCCTTGTTTCATCAGAATCTATCCGGGTGCCTGATTATAAGGTTACAATACGGCCCCCAAAGGATGGTTCCTTTTTTAAGAATCTTCCAAAATCTAGTGCTATCAAGCTGATTGATTTTGGAAGTACAACATTCGAACACCAAGACCACAATTATGTGGTATCAACAAGGCATTATCGTGCCCCTGAAGTTATCCTTGGTCTTGGGTGGAATTATTCATGTGATTTGTGGAGTGTGGGATGCATTTTAGTTGAACTCTGCTCGGGTGAAGCTCTCTTTCAAACACATGAAAATTTGGAGCATTTGGCTATGATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGATCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGAGGGGGCTGCCTCACGGGAAAGCCTGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGAATCTGGTAATGCAACATGTTGATCATTCTGCTGGAGATCTTATAGATCTTCTTCAAGGCCTTCTTCGGTATGATCCTGATGCGCGCCTAAAGGCACGTGAAGCTCTTCAACACCCGTTCTTTACAAGATGCCACAGAAGATGTGGTTACTGA

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Protein seq

MEAQWLAEYPHQGADKRPRKRPRLAWDVAPPLFQPPKAIPMLYCGQELINGNFATAFLPPPPIYYTGPPRNLSPPWRPDDKDGHYVFAVGENLTPRYRILSKMGEGTFGQVLECWDLEHQETVAIKIVRSLQKYREAAMIEIDVLQRLGKHDFTGSRCVQIRNWFDYRNHICIVFERLGPSLYDFLRKNSYRAFPIDLVREFARQILESVAFMHDLRLIHTDLKPENILLVSSESIRVPDYKVTIRPPKDGSFFKNLPKSSAIKLIDFGSTTFEHQDHNYVVSTRHYRAPEVILGLGWNYSCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPKHMIVRADRRAEKYFRRGLRLDWPEGAASRESLKAVWKLPRLQNLVMQHVDHSAGDLIDLLQGLLRYDPDARLKAREALQHPFFTRCHRRCGY

Function Serine/threonine-protein kinase AFC1 [UniProtKB/Swiss-Prot:P51566]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNip_01g0837900 OsNip_01t0837900-02 Chr01 35923866 35925579 - RAP2018-11-26
CDS seq

-

Protein seq

-

Gene Transcript Chromosome Start End Strand Source
OsNip_01g0837900 OsNip_01t0837900-01 Chr01 35925492 35929372 - RAP2018-11-26
CDS seq

ATGGAGGCGCAGTGGCTCGCCGAGTACCCGCACCAGGGCGCCGACAAGCGGCCGCGGAAGCGGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGACCGCTTTTCTGCCACCGCCACCAATCTATTATACAGGACCACCACGCAATCTTTCGCCTCCCTGGAGGCCAGATGACAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCAAGATATAGAATACTTAGCAAGATGGGTGAAGGGACTTTTGGACAAGTCTTAGAGTGCTGGGACTTGGAACACCAAGAGACAGTGGCTATCAAAATTGTGCGCTCCCTTCAGAAATATCGAGAGGCTGCTATGATTGAAATTGATGTGCTTCAGAGGCTTGGGAAGCATGATTTTACTGGTAGCCGCTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATATGTATAGTATTTGAGAGGCTCGGACCAAGCTTATATGACTTCCTCCGAAAGAATAGTTATCGTGCATTTCCGATCGACCTTGTTCGGGAATTTGCCAGACAAATATTAGAGTCTGTTGCATTTATGCATGACCTGCGACTTATTCACACAGATCTGAAACCTGAGAACATTCTCCTTGTTTCATCAGAATCTATCCGGGTGCCTGATTATAAGGTTACAATACGGCCCCCAAAGGATGGTTCCTTTTTTAAGAATCTTCCAAAATCTAGTGCTATCAAGCTGATTGATTTTGGAAGTACAACATTCGAACACCAAGACCACAATTATGTGGTATCAACAAGGCATTATCGTGCCCCTGAAGTTATCCTTGGTCTTGGGTGGAATTATTCATGTGATTTGTGGAGTGTGGGATGCATTTTAGTTGAACTCTGCTCGGGTGAAGCTCTCTTTCAAACACATGAAAATTTGGAGCATTTGGCTATGATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGATCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGAGGGGGCTGCCTCACGGGAAAGCCTGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGAATCTGGTAATGCAACATGTTGATCATTCTGCTGGAGATCTTATAGATCTTCTTCAAGGCCTTCTTCGGTATGATCCTGATGCGCGCCTAAAGGCACGTGAAGCTCTTCAACACCCGTTCTTTACAAGATGCCACAGAAGATGTGGTTACTGA

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Protein seq

MEAQWLAEYPHQGADKRPRKRPRLAWDVAPPLFQPPKAIPMLYCGQELINGNFATAFLPPPPIYYTGPPRNLSPPWRPDDKDGHYVFAVGENLTPRYRILSKMGEGTFGQVLECWDLEHQETVAIKIVRSLQKYREAAMIEIDVLQRLGKHDFTGSRCVQIRNWFDYRNHICIVFERLGPSLYDFLRKNSYRAFPIDLVREFARQILESVAFMHDLRLIHTDLKPENILLVSSESIRVPDYKVTIRPPKDGSFFKNLPKSSAIKLIDFGSTTFEHQDHNYVVSTRHYRAPEVILGLGWNYSCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPKHMIVRADRRAEKYFRRGLRLDWPEGAASRESLKAVWKLPRLQNLVMQHVDHSAGDLIDLLQGLLRYDPDARLKAREALQHPFFTRCHRRCGY

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Gene Transcript Chromosome Start End Strand Source
OsNip_01g0837900 OsNip_01t0837900-03 Chr01 35925610 35929395 - IsoSeq
CDS seq

GGGTTGCGCGGACGCGAACACCACCAGACCAGACCACCTCCTCCTCGAGCTTCCCCTCCTCCCCCTCTTTCCAAATTTCCCCAATCTCGCGTCGCTTCTTCCCCGAATTCCCCAACCTCGCATCCCGATTCCTCCCGCGGATCGTGCGGCGACCTCGCCCAAAATCCCCCGCCGGATTGGCCTCGCCGATGGCTTAATTGGCGATTTCGACTCTGCAATGGAGGCGCAGTGGCTCGCCGAGTACCCGCACCAGGGCGCCGACAAGCGGCCGCGGAAGCGGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGACCGCTTTTCTGCCACCGCCACCAATCTATTATACAGGACCACCACGCAATCTTTCGCCTCCCTGGAGGCC

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Protein seq

GLRGREHHQTRPPPPRASPPPPLSKFPQSRVASSPNSPTSHPDSSRGSCGDLAQNPPPDWPRRWLNWRFRLCNGGAVARRVPAPGRRQAAAEAAPPRLGCRAPAVPAPQGNSYAILRAGTNQWKFCDRFSATATNLLYRTTTQSFASLEA

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
RI Chr01 35925961 35926315 - OsNip_01t0837900-03 OsNip_01t0837900-03,OsNip_01t0837900-01 All

Expression

Leaf Root Panicle
FPKM 5.648159 8.871888 17.080921

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_05g0466900 SBH 0.0 0.000000 5.028913
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g62080 RBH 2.059143 2.929243 2.176887
Nipponbare | IRGSP 1.0 | RAP-db Os01g0837900 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0039570 RBH 2.712476 20.949581 15.663200
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0039030 RBH 1.517203 7.616956 8.338332
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0023510 SBH 1.465007 0.000000 6.519214
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0038920 RBH 0.752370 0.825692 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0038490 RBH 25.671669 25.423124 43.221260
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0594100 RBH 24.6541655 35.9253825 35.1104435
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0038160 RBH 0.534463 1.272851 3.952138
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0591200 RBH 17.6333325 21.0986525 29.9215705
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0038500 RBH 0.506375 0.604010 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_01g0038460 RBH 1.577471 18.727606 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_01g0038700 RBH 12.650743 39.474602 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0038710 RBH 3.071200 2.893123 4.223252
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_01g0038530 RBH 0.882588 14.995417 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G039040 RBH 1.229282 7.441152 8.447887
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0038740 RBH 3.826754 38.752922 24.516844
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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