Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNip_01g0837900 OGI:01107240 | 15/16 Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) Chr01:35923866-35929395
Gene Symbol -
DNA seq

GAAAGAACACATGCAGTAGTATATATTAGTACAGGGTTGTTGGTTCGAAACCTGTGATCAAAACCGCTGCTCGCCGTCTTCAAACAAACGCGATCTCTGTAACATATGATGATCGAAGCAAATACGACTATACGAGAATGCCAGGTTCGAAACCTGTGATCAAACCTGCTGCTCGCCGTCTTCGAACGCGATCTCATGTAACATGACGATGGAAGCGTTGGCGCCCGTTCCGAAGGGTTAGTATATCATACCTTACAGAGTTACAGGCTCTTGTACAATTGACCCGCTGCTACAGCTTTGGAGGCGATCTTTGGGCTGACGTCACGTAGCCCAATGAGTAAAACATTTACCAGCTGCTCATCCATTCACAGTAGGAAGCAGCAGCTCTCCAAATCCACCTTCGATGAGTAAAATCTTTCGCATGTCCAAAACGAGCCTAAACTACCAGCATTCTGGGGTTAGTCTATCTTGCCTATAGAATGATTTCATCTTTAATCAACAAAACAAGCCGGACTAATTTTGTTTCACTAGTGTTGACACTCGATGTTGATAAATTACCTTCAACGGTAGTTTCACTCAATTGCAAAAATGAAAACGATAAATTAAAAAAAATACTCGTCCTTGCTTAAATATAGTTGTAAAACATTTTCCAGCAGATTTCAAATACTCAGTTTGTCAAAGAAGATATTGTAGCAGCCAATAAGATGTTATCAGACCAAATAACAGTCTTTTTTTTTGCCAGAAGATAACTTTTGAGTAATGAGCCTTTATAGAAAGAAGAAACAAGCAATAGATGAATACAATCATCACATCACTAAAGTTTGATAAAGGAAATGACTTTTGTAAGATATTAAGAACAAGCTCACCTGGCGCAAACGATAGACACAGGTTGAGTATAGTTTTAAGCTCAAAACCCACAAGGATTTATCTAACAAACATCTCCAATCCAAGAGCTTGGTGGCTGCTAGTAATATGGGAACCAGTAAGATTTTAAAGCCAGTACTTTACGGTATATTCAGGTAAATTAGATATATATCAGCTGCTATCAAGGATTCTGGACTTTAGTCACAGTTGACAATATTTCAAAGTTGAGCACATCTTGAGATTTAGACTACTGTCCACAATTTCAAAGTTGTCGCAAACCTTTCCAAGCCAAGTGTCAGACTCAAAAGCTCAGTTAATTACCAAACTTTTATCCAACACCCGAGACTTGTTTTAAGAAATATGACCAGTCACAAGCAAAACTCACCAGGGTGTAACTTTAACGTCCGGTTAGTTTCCAGGGCTAATCATGCATTTCAAGGTAAAATAGAATGGACATGAAGGTCAAGTGAACAGGCCATCACCAATTTTCACGAGAAATACTGAGATCCTAAATGCACATAAAATTATATTGATAAGCCTATCTCCACACCAAACAGGACATGGTCAGAATGCAATGCTCACCTTATATCACCAGCTCACCATCAAATACAGTGTACCAATCTTTCATGAGAGCCACTGGCATTCCCTCTATCCTCAATTGACTCCACCAAGTTGAGATTTCTGCATGCTACCTGCTAGTACTGGGCAGTCTTGCAAAAATTAGTATGAAGTAAAATGTGAGGTTTAAAGACAGGAACTTGTAAGAATTGAAAAATATCTCCCAGTTAAAATAAATCGGCAGTCGTAGAACTCTGTCTATATACAACAGTTACCTTGCACATCATCGAACAGAATGCGAGTTAGCACATTTCATTTTTGTGGAACATCTTCACTTTTTTTTTGGGTGGTTCTTACACATCAAAATGAAGAAATACAGCATTGAGCATTTTAATCTCAGTATAGTCTCAGTAACCACATCTTCTGTGGCATCTTGTAAAGAACGGGTGTTGAAGAGCTTCACGTGCCTTTAGGCGCGCATCAGGATCATACCGAAGAAGGCCTTGAAGAAGATCTATAAGATCTCCAGCAGAATGATCAACATGTTGCATTACCAGATTCTGCATGAGTTAGCACAATTCGAGTGTCAAGAGGATACCACCTATGAGCGACACTTGGCAAAGAGGGGAAAATGCTAAGAGGAACATACTGACTACATCAGATAACAAAGTACCTGCAGACGAGGCAATTTCCAGACTGCCTTCAGGCTTTCCCGTGAGGCAGCCCCCTCTGGCCAGTCCAACCTTAATCCACGTCTGAAATACTTTTCAGCACGGCGACTGTAAAAAAGAAGTAACAAGTACATGCAAGTGATTGATAATTTGAAAGAACTTCAGATGAAACTCAGCAGCAACCTAAGCCTAGATGTAAACCATCTTATCTTAGATTATAATAAATCATGAAACTATAACGAAGACCTTGTATACATACTCAGCTCTGACAATCATATGTTTTGGAAGGGGACCTAGAACTCTCTCCATCATAGCCAAATGCTCCAAATTTTCATGTGTTTGAAAGAGAGCTTCACCCTAGTAGAGAAAATCAAAGAGGCAACATATCAATAGGAAGCACTGCAAATTCGCGGAGCCGGCACTGGGCTATAGAGAAAATCAAGGAACTACTCAGGTATAGATAGTGTGAACTAACCGAGCAGAGTTCAACTAAAATGCATCCCACACTCCACAAATCACATGAATAATTCCACCCAAGACCTGCAAATGAAAACAGAGAAAGGAAATAACTAAACAAAGGTACCATAAACAAAACACAGTAATATAATTATGTGTTCCACTTTATAGGGGGGAAATGGAAAAGGATATGATGTTAATACCAAGGATAACTTCAGGGGCACGATAATGCCTTGTTGATACCACATAATTGTGGTCTTGGTGTTCGAATGTTGTACTTCCAAAATCAATCAGCTTGATAGCACTAGATTTTGGAAGATTCTTAAAAAAGGAACCATCCTTTGGGGGCCGTATTGTAACCTTTATGGAAAACAATATAAAAATCAGTAAAAAATAAATGTATGCTCGTACTAATTGACATAATGTAATGGCAACCACAAGTGTTAACGGATAAAATTGCAAAAGATTATAGTTCGAATGACAAAATTTAGTATTGAAGCCACCTTATAATCAGGCACCCGGATAGATTCTGATGAAACAAGGAGAATGTTCTCAGGTTTCAGATCTGTGTGAATAAGTCGCAGGTCATGCATAACTGCAAATATTACAATAAAATAAACATTAGAATAATACTGTTAGGGGCAAGATAAAACAAAACGTTAATTTGCATAACCAACAAACAGCAGAAATTAACTGAATACCCACATGCAACAGACTCTAATATTTGTCTGGCAAATTCCCGAACAAGGTCGATCGGAAATGCACGATAACTATTCTTTCGGAGGAAGTCATATAAGCTTGGTCCGAGCCTCTCAAATACCTGACAAAGTTAGTAATTCAATATTAAATTCTGACCATCCAAAACATGAAAGGAAGCCTTCTTGATGCACATGTACTTACTATACATATATGATTACGATAGTCAAACCAATTCCGTATTTGCACACAGCTGCAGGCATAGAACCATTCATGCAAATCCATCAACTCAATAAAGAGTCAAGACTTAGCAATGACGAAAGTAGTTTGCTTACCGGCTACCAGTAAAATCATGCTTCCCAAGCCTCTGAAGCACATCAATTTCAATCATAGCAGCCTCTCGATATTTCTGAAGGGAGCGCACAATTTTGATAGCCACTGTCTCTTGGTGTTCCAAGTCCCAGCACTCTAAGACTTGTCCAAAAGTCCCTGCAACACAAATTAAGAAAGGTAGTTGTTGGTAACATGTACAAAGGGCAAAACTTTTGCAGCATAAGCATTTATCCTGAACTATTCCTTATAAAATGAAATGTTGAAATTTAGAAAAGGAGGAGCACACTGACCTTCACCCATCTTGCTAAGTATTCTATCTGCAAAGCCATAGACAAGAACAAAGGTTAAACCTCAGAATTATCTCAACCAAAAGAAGCATCGCCAACAAAACATAAGTTCAGTACAGCTGGTAGAGATGCAGGGCAGTTGACAACACAACGGCAATAGATATCAAGAATGCACGACCATTACACAATGTCAGAAGTTATTTGGGCAACGAACAAAGGTATGCAAACATTTTACCCTGATTTAATTGACTGTAAATAATGAATGGTTATTTAATGAGGCTTGAAATGCCATTCAACCCATAATTAGGTGGTTGAAACACGGTGTTGCATTTAACCAGTAACTGACAATCATTAAACAGCTACATAAGTCCCAAATATCAAACAAAATGAAAGTTCTGTGTCCAGTATTTCAACAATTGTGGCAAGATAAACTTACTCCAGAAGAAAAACAGTTTAACAGTCTAACCAAGCAAGCGATCAGAAATGCAAACAAAAACAATAACCCTATGCAATAAATAATACTGAGTTGTGGAAAAATACATCTTGGTGTAAGGTTCTCCCCAACTGCGAAAACATAGTGTCCATCCTTGTCATCTGGCCTCCAGGGAGGCGAAAGATTGCGTGGTGGTCCTGTATAATAGATTGGTGGCGGTGGCAGAAAAGCGGTCGCAAAATTTCCATTGATTAGTTCCTGCCCGCAATATAGCATAGGAATTGCCTACAAAAATAATTAGCCACGTAAATTACTATTAACCATATACATCAAAATTGGTAACAAGCATATAAATTCTAAATGAATAGAAACAACTGCATACTGATCTCCTGTGTTTTCAAAGTTCAATGATATTTACACCCCACTTAGCACCATTAAAGTTATCTATCTGTTTTGTTTGATAGTCCTAAATAGAGAAGTACACCGGGTAACCCATATGTTTGACAGCACTGAATGGACAAATACCTCAAGTAACGGTTGTGTCCCACCAAAAGAGAACAATATCGATTAGCAAAAATAATGACAGAATATCAAACTTTATTAGCAAGTTCCATAAATTTGGCAGCACTTAGGCACATGGAGGTCGTGAGATTGCCCCTTTTCTCCATATTGTTCTTTCGATCAGCAACTGGCTCCGATCCTATCCCACAAATTCACAATATCACATCGATGATCCTCTGCAACAGCGCAGCATATCCCCAATTCCCAAATATGCACACCCAGATCGAACCGCCCCGCTCTAAATCTAGCGAAACCACGACTAGATCTAGCCAAAAACTACCACCGCAACCCACACGCCCGAGAGAGACCGGATCGACGCAGCACATAGCGCATGGATTATACCTTGGGGGGCTGGAACAGCGGGGGCGCGACATCCCAGGCGAGGCGGGGCCGCTTCCGCGGCCGCTTGTCGGCGCCCTGGTGCGGGTACTCGGCGAGCCACTGCGCCTCCATTGCAGAGTCGAAATCGCCAATTAAGCCATCGGCGAGGCCAATCCGGCGGGGGATTTTGGGCGAGGTCGCCGCACGATCCGCGGGAGGAATCGGGATGCGAGGTTGGGGAATTCGGGGAAGAAGCGACGCGAGATTGGGGAAATTTGGAAAGAGGGGGAGGAGGGGAAGCTCGAGGAGGAGGTGGTCTGGTCTGGTGGTGTTCGCGTCCGCGCAACCCT

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CDS seq

ATGGAGGCGCAGTGGCTCGCCGAGTACCCGCACCAGGGCGCCGACAAGCGGCCGCGGAAGCGGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGACCGCTTTTCTGCCACCGCCACCAATCTATTATACAGGACCACCACGCAATCTTTCGCCTCCCTGGAGGCCAGATGACAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCAAGATATAGAATACTTAGCAAGATGGGTGAAGGGACTTTTGGACAAGTCTTAGAGTGCTGGGACTTGGAACACCAAGAGACAGTGGCTATCAAAATTGTGCGCTCCCTTCAGAAATATCGAGAGGCTGCTATGATTGAAATTGATGTGCTTCAGAGGCTTGGGAAGCATGATTTTACTGGTAGCCGCTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATATGTATAGTATTTGAGAGGCTCGGACCAAGCTTATATGACTTCCTCCGAAAGAATAGTTATCGTGCATTTCCGATCGACCTTGTTCGGGAATTTGCCAGACAAATATTAGAGTCTGTTGCATTTATGCATGACCTGCGACTTATTCACACAGATCTGAAACCTGAGAACATTCTCCTTGTTTCATCAGAATCTATCCGGGTGCCTGATTATAAGGTTACAATACGGCCCCCAAAGGATGGTTCCTTTTTTAAGAATCTTCCAAAATCTAGTGCTATCAAGCTGATTGATTTTGGAAGTACAACATTCGAACACCAAGACCACAATTATGTGGTATCAACAAGGCATTATCGTGCCCCTGAAGTTATCCTTGGTCTTGGGTGGAATTATTCATGTGATTTGTGGAGTGTGGGATGCATTTTAGTTGAACTCTGCTCGGGTGAAGCTCTCTTTCAAACACATGAAAATTTGGAGCATTTGGCTATGATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGATCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGAGGGGGCTGCCTCACGGGAAAGCCTGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGAATCTGGTAATGCAACATGTTGATCATTCTGCTGGAGATCTTATAGATCTTCTTCAAGGCCTTCTTCGGTATGATCCTGATGCGCGCCTAAAGGCACGTGAAGCTCTTCAACACCCGTTCTTTACAAGATGCCACAGAAGATGTGGTTACTGA

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Protein seq

MEAQWLAEYPHQGADKRPRKRPRLAWDVAPPLFQPPKAIPMLYCGQELINGNFATAFLPPPPIYYTGPPRNLSPPWRPDDKDGHYVFAVGENLTPRYRILSKMGEGTFGQVLECWDLEHQETVAIKIVRSLQKYREAAMIEIDVLQRLGKHDFTGSRCVQIRNWFDYRNHICIVFERLGPSLYDFLRKNSYRAFPIDLVREFARQILESVAFMHDLRLIHTDLKPENILLVSSESIRVPDYKVTIRPPKDGSFFKNLPKSSAIKLIDFGSTTFEHQDHNYVVSTRHYRAPEVILGLGWNYSCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPKHMIVRADRRAEKYFRRGLRLDWPEGAASRESLKAVWKLPRLQNLVMQHVDHSAGDLIDLLQGLLRYDPDARLKAREALQHPFFTRCHRRCGY

Function Serine/threonine-protein kinase AFC1 [UniProtKB/Swiss-Prot:P51566]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNip_01g0837900 OsNip_01t0837900-02 Chr01 35923866 35925579 - RAP2018-11-26
CDS seq

-

Protein seq

-

Gene Transcript Chromosome Start End Strand Source
OsNip_01g0837900 OsNip_01t0837900-01 Chr01 35925492 35929372 - RAP2018-11-26
CDS seq

ATGGAGGCGCAGTGGCTCGCCGAGTACCCGCACCAGGGCGCCGACAAGCGGCCGCGGAAGCGGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGACCGCTTTTCTGCCACCGCCACCAATCTATTATACAGGACCACCACGCAATCTTTCGCCTCCCTGGAGGCCAGATGACAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCAAGATATAGAATACTTAGCAAGATGGGTGAAGGGACTTTTGGACAAGTCTTAGAGTGCTGGGACTTGGAACACCAAGAGACAGTGGCTATCAAAATTGTGCGCTCCCTTCAGAAATATCGAGAGGCTGCTATGATTGAAATTGATGTGCTTCAGAGGCTTGGGAAGCATGATTTTACTGGTAGCCGCTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATATGTATAGTATTTGAGAGGCTCGGACCAAGCTTATATGACTTCCTCCGAAAGAATAGTTATCGTGCATTTCCGATCGACCTTGTTCGGGAATTTGCCAGACAAATATTAGAGTCTGTTGCATTTATGCATGACCTGCGACTTATTCACACAGATCTGAAACCTGAGAACATTCTCCTTGTTTCATCAGAATCTATCCGGGTGCCTGATTATAAGGTTACAATACGGCCCCCAAAGGATGGTTCCTTTTTTAAGAATCTTCCAAAATCTAGTGCTATCAAGCTGATTGATTTTGGAAGTACAACATTCGAACACCAAGACCACAATTATGTGGTATCAACAAGGCATTATCGTGCCCCTGAAGTTATCCTTGGTCTTGGGTGGAATTATTCATGTGATTTGTGGAGTGTGGGATGCATTTTAGTTGAACTCTGCTCGGGTGAAGCTCTCTTTCAAACACATGAAAATTTGGAGCATTTGGCTATGATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGATCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGAGGGGGCTGCCTCACGGGAAAGCCTGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGAATCTGGTAATGCAACATGTTGATCATTCTGCTGGAGATCTTATAGATCTTCTTCAAGGCCTTCTTCGGTATGATCCTGATGCGCGCCTAAAGGCACGTGAAGCTCTTCAACACCCGTTCTTTACAAGATGCCACAGAAGATGTGGTTACTGA

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Protein seq

MEAQWLAEYPHQGADKRPRKRPRLAWDVAPPLFQPPKAIPMLYCGQELINGNFATAFLPPPPIYYTGPPRNLSPPWRPDDKDGHYVFAVGENLTPRYRILSKMGEGTFGQVLECWDLEHQETVAIKIVRSLQKYREAAMIEIDVLQRLGKHDFTGSRCVQIRNWFDYRNHICIVFERLGPSLYDFLRKNSYRAFPIDLVREFARQILESVAFMHDLRLIHTDLKPENILLVSSESIRVPDYKVTIRPPKDGSFFKNLPKSSAIKLIDFGSTTFEHQDHNYVVSTRHYRAPEVILGLGWNYSCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPKHMIVRADRRAEKYFRRGLRLDWPEGAASRESLKAVWKLPRLQNLVMQHVDHSAGDLIDLLQGLLRYDPDARLKAREALQHPFFTRCHRRCGY

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Gene Transcript Chromosome Start End Strand Source
OsNip_01g0837900 OsNip_01t0837900-03 Chr01 35925610 35929395 - IsoSeq
CDS seq

GGGTTGCGCGGACGCGAACACCACCAGACCAGACCACCTCCTCCTCGAGCTTCCCCTCCTCCCCCTCTTTCCAAATTTCCCCAATCTCGCGTCGCTTCTTCCCCGAATTCCCCAACCTCGCATCCCGATTCCTCCCGCGGATCGTGCGGCGACCTCGCCCAAAATCCCCCGCCGGATTGGCCTCGCCGATGGCTTAATTGGCGATTTCGACTCTGCAATGGAGGCGCAGTGGCTCGCCGAGTACCCGCACCAGGGCGCCGACAAGCGGCCGCGGAAGCGGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGACCGCTTTTCTGCCACCGCCACCAATCTATTATACAGGACCACCACGCAATCTTTCGCCTCCCTGGAGGCC

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Protein seq

GLRGREHHQTRPPPPRASPPPPLSKFPQSRVASSPNSPTSHPDSSRGSCGDLAQNPPPDWPRRWLNWRFRLCNGGAVARRVPAPGRRQAAAEAAPPRLGCRAPAVPAPQGNSYAILRAGTNQWKFCDRFSATATNLLYRTTTQSFASLEA

OsNip_01t0837900-03OsNip_01t0837900-02OsNip_01t0837900-01AS35924000 bp35925000 bp35926000 bp35927000 bp35928000 bp35929000 bp35930000 bpAll AS eventsIsoSeq based ASRoot based ASLeaf based ASPanicle based AS
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
RI Chr01 35925961 35926315 - OsNip_01t0837900-03 OsNip_01t0837900-03,OsNip_01t0837900-01 All

Expression

Leaf Root Panicle
FPKM 5.648159 8.871888 17.080921

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_05g0466900 SBH 0.0 0.000000 5.028913
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g62080 RBH 2.059143 2.929243 2.176887
Nipponbare | IRGSP 1.0 | RAP-db Os01g0837900 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0039570 RBH 2.712476 20.949581 15.663200
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0039030 RBH 1.517203 7.616956 8.338332
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0023510 SBH 1.465007 0.000000 6.519214
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0038920 RBH 0.752370 0.825692 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0038490 RBH 25.671669 25.423124 43.221260
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0594100 RBH 24.6541655 35.9253825 35.1104435
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0038160 RBH 0.534463 1.272851 3.952138
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0591200 RBH 17.6333325 21.0986525 29.9215705
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0038500 RBH 0.506375 0.604010 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_01g0038460 RBH 1.577471 18.727606 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_01g0038700 RBH 12.650743 39.474602 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0038710 RBH 3.071200 2.893123 4.223252
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_01g0038530 RBH 0.882588 14.995417 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G039040 RBH 1.229282 7.441152 8.447887
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0038740 RBH 3.826754 38.752922 24.516844
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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