Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0038710 | OGI:01107240 | 15/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:37504081-37507994 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | caggaacttgtaagaattgaaaaatatctcccagttcaaatAaatcggcagtcgtagaactctgtctatatacaacagttaccttgcaCatcatcgaacagaatgcgagttagcacatttcatttttgtggaacatcttcacTttttttttgggtggTTCttacacatcaaaatgaagaaatacagcattgagcaTtttaatctcagtatagtctcagtaaccacatcttctgtggcatcttgtaaagaacgggtgttgaagagcttcacgtgcctttaggcgcacatcaggatcataccgaagaaggccttgaagaagatctataagatctccagcagaatgatcaacatgttgcattaCcCAGATTCTGCATGAGTTAGCACAATTCGAGTGTCAAGAGGATACCACCTATGAGCGACACTTGGCAAAGAGGGGAAAATGCTAAGAGGAACATACTGACTACATCAGATAACAAAGTACCTGCAGACGAGGCAATTTCCAGACTGCCTTCAGGCTTTCCCGTGAGGCAGCCCCCTCTGGCCAGTCCAACCTTAATCCACGTCTGAAATACTTTTCAGCACGGCGACTGTAAAAAAGAAGTAACAAGTACATGCAAGTGATTGATAATTTGAAAGAACTTCAGATGAAACTCAGCAGCAACCTAAGCCTAGATGTAAACCATCTTATCTTAGATTATAATAAATCATGAAACTATAACGAAGATCTTGTATACATACTCAGCTCTGACAATCATATGTTTTGGAAGGGGACCTAGAACTCTCTCCATCATAGCCAAATGCTCCAAATTTTCATGTGTTTGAAAGAGAGCTTCACCCTAGTAGAGAAAATCAAAGAGGCAACATATCAataggaagcactgcaaattcgcggagccggcactgggctatagagaaaatcaaggaactactcaggtatagatagtgtgaactaaccgagcagagttcaactaaaatgcatcccacactccaCaaatcacatgaataattccacccaagacctgcaaatgaaaatagagaaaggaaataactaaacaaaggtaccataaacaaaacacagtaatataattatgtgttccactttataggggggaaatggaaaaggatatgatgttaataccaaggataacttcaggggcacgataatgccttgttgataccacataattgtggtcttggtgttcgaatgttgtacttccaaaatcaatcagcttgatagcactagattttggaagattcttAAaaaaggaaccatcctttgggggccgtattgtaacctttatggaaaacaatataaaaatcagtAaaaaataaatgtatgctcgtactaattgacataatgtaatggcaaccacaagtgttaacggataaaattgcaaaagattatagttcgaatgacAaaattttgtattgaagccaccttataatcaggcacccggatagattctgatgaaacaaggagaatgttctcaggtttcagatctgtgtgaataagtcgcaggtcatgcataactgcaaatAttacaataaaataaacattagaataatactgttaggggcaagataaaacaaaacgttaatttgcataaccaacaaacagcagaaattaactgaatacccacatgcAacagactctaatatttgtctggcaaattcccgaacaaggtcgatcggaaatgcacgataactattctttcggaggaagtcatataagcttggtccgagcctctcaaatacctgacaaagttagtaattcaatattaaattctgaccatccaaaacatgaaaggaagccttcttgatgcacatgtacttactatacATatatgattacgatagtcaaaccaattccgtatttgcacacagctgcaggcatagaaccattcatgcaaatccatcAactcaataaagagtcaagacttagcaatgacgaaagtagtttgcttaccggctaccagtaaaatcatgcttcccaagcctctgaagcacatcaatttcaatcatagcagcctctcgatatttctgaagggagcgcacaattttgatagccactgtctcttggTgttccaagtcccagcactctaagacttgtccaaaagtccctgcaacacaaattaagaaaggtagttgttggtaacatgtacaaagggcaaaacttttgcagcataagcatttatcctgaactattccttataaaatgaaatgttgaaatttagaaaaggaggagcacactgaccttcacccatcttgctaagtattctatctgcaaagccatagacaagaacAaaggttaaacctcagaattatctcaaccaaaagaagcatcgccaacaaaacataagttcagtacagctggtagagatgcagggcagttgacaacacaactgcaatagatatcaagaatgcacgaccattacacaatgtcagaagttatttgggcaacgaacaaaggtatgcaaacattttaccctgatttAattgactgtAaataatgaatggttatttaatgaggcttgaaatgccattcaaCccataattaggtggttgaaacacggtgttgcatttAaccagtaaCcgacaatcaTtaaacagctacataagtcccaaatatcaaacaaaatgaaagttctgtgtccagtatttcaacaattgtggcaagataaacttactccagaagaaaaacagtttaacagtctaaccaagcaagcgatcagaaatgcaaacaaaaacaataaccctatgcaataaataatactgagttgtggaaaaatacatcttggtgtaaggtCTCCCCAACTGCGAAAACATAGTGTCCATCCTTGTCATCTGGCCTCCAGGGAGGCGAAAGATTGCGTGGTGGTCCTGTATAATAGATTGGTGGCGGTGGCAGAAAAGCGGTCGCAAAATTTCCATTGATTAGTTCCTGCCCGCAATATAGCATAGGAATTGCCTACAAAAATAATTAGCCACGTAAATTACTATTAACCATATACATCAAAATTGGTAACAAGCATATAAATTCTAAATGAATAGAAACAACTGCATACTGATCTCCTGTGTTTTCAAAGTTCAATGATATTTACACCCCACTTAGCACCATCCAAGTTATCTATCTGTTTTGTTTGATAGTCCTAAATAGAGAAGTACACCGGGTAACCCATATGTTTGACAGCACTGAATGGACAAATACCTCAAGTAACGGTTGTGTCCCACCAAAAGAGAACAATATCGATTAGCAAAAATAATGACAGAATATCAAACTTTATTAGCAAGTTCCATAAaatttggcagcacttaggcacatggaggtcgtgagattgccccttttctccatattgttctttcgatcagcaacTggctccgatcctatcccacaaattcacaatatcacatcgatgatcctctgcaacagcgcagcatatccccaattcccaaatatgcacaCccagatcgaaccgccccgctctaaatctagcgaaaccACGactagatctagccaaaaactaccaccgcAacccacacgcccgagagagaccggatcgacgcagcacatagcgcatggattataccttggggggctggaacagcgggggcgcgacatcccaggcgaggcggggccgcttccgcggccgcttgtcGgcgccctggtgcGggtactcggcgagccactgcgcctccattgcagagtcgaaatcgccAattaagccatcggcgaggccaatccggcgggggattttgggcgaggtcgccgcacgatccgcgggaggAatcgggatgcgaggttGgggaattcggggaagaaGcgacgcgagattggggaaatttggAaagagggggaGgaggggaagctcgaggaggaggtggtctggtctggtggtgttcgcgtccgcgcaacc
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| CDS seq | atggaggcgcagtggctcgccgagtaccCgcaccagggcgcCgacaagcggccgcggaagcggccccgcctcgcctgggatgtcgcgcccccgctgttccagccccccaagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGACCGCTTTTCTGCCACCGCCACCAATCTATTATACAGGACCACCACGCAATCTTTCGCCTCCCTGGAGGCCAGATGACAAGGATGGACACTATGTTTTCGCAGTTGGGGAGaccttacaccaagatactgttaaactgtttttcttctggaatagaatacttagcaagatgggtgaagggacttttggacaagtcttagagtgctgggacttggaacAccaagagacagtggctatcaaaattgtgcgctcccttcagaaatatcgagaggctgctatgattgaaattgatgtgcttcagaggcttgggaagcatgattttactggtagccgctgtgtgcaaatacggaattggtttgactatcgtaatcatatATgtatagtatttgagaggctcggaccaagcttatatgacttcctccgaaagaatagttatcgtgcatttccgatcgaccttgttcgggaatttgccagacaaatattagagtctgtTgcatttatgcatgacctgcgacttattcacacagatctgaaacctgagaacattctccttgtttcatcagaatctatccgggtgcctgattataaggttacaatacggcccccaaaggatggttccttttTTaagaatcttccaaaatctagtgctatcaagctgattgattttggaagtacaacattcgaacaccaagaccacaattatgtggtatcaacaaggcattatcgtgcccctgaagttatccttggtcttgggtggaattattcatgtgatttGtggagtgtgggatgcattttagttgaactctgctcgGGTGAAGCTCTCTTTCAAACACATGAAAATTTGGAGCATTTGGCTATGATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGATCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGAGGGGGCTGCCTCACGGGAAAGCCTGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGGTACTTTGTTATCTGATAATCTGgGtaatgcaacatgttgatcattctgctggagatcttatagatcttcttcaaggccttcttcggtatgatcctgatgtgcgcctaaaggcacgtgaagctcttcaacacccgttctttacaagatgccacagaagatgtggttactga
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| Protein seq | MEAQWLAEYPHQGADKRPRKRPRLAWDVAPPLFQPPKAIPMLYCGQELINGNFATAFLPPPPIYYTGPPRNLSPPWRPDDKDGHYVFAVGETLHQDTVKLFFFWNRILSKMGEGTFGQVLECWDLEHQETVAIKIVRSLQKYREAAMIEIDVLQRLGKHDFTGSRCVQIRNWFDYRNHICIVFERLGPSLYDFLRKNSYRAFPIDLVREFARQILESVAFMHDLRLIHTDLKPENILLVSSESIRVPDYKVTIRPPKDGSFFKNLPKSSAIKLIDFGSTTFEHQDHNYVVSTRHYRAPEVILGLGWNYSCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPKHMIVRADRRAEKYFRRGLRLDWPEGAASRESLKAVWKLPRLQVLCYLIIWVMQHVDHSAGDLIDLLQGLLRYDPDVRLKAREALQHPFFTRCHRRCGY |
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| Function | Serine/threonine-protein kinase AFC1 [UniProtKB/Swiss-Prot:P51566] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0038710 | OsLiXu_01g0038710.01 | Chr01 | 37504092 | 37507973 | - | NAM | ||
| CDS seq | atggaggcgcagtggctcgccgagtaccCgcaccagggcgcCgacaagcggccgcggaagcggccccgcctcgcctgggatgtcgcgcccccgctgttccagccccccaagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGACCGCTTTTCTGCCACCGCCACCAATCTATTATACAGGACCACCACGCAATCTTTCGCCTCCCTGGAGGCCAGATGACAAGGATGGACACTATGTTTTCGCAGTTGGGGAGaccttacaccaagatactgttaaactgtttttcttctggaatagaatacttagcaagatgggtgaagggacttttggacaagtcttagagtgctgggacttggaacAccaagagacagtggctatcaaaattgtgcgctcccttcagaaatatcgagaggctgctatgattgaaattgatgtgcttcagaggcttgggaagcatgattttactggtagccgctgtgtgcaaatacggaattggtttgactatcgtaatcatatATgtatagtatttgagaggctcggaccaagcttatatgacttcctccgaaagaatagttatcgtgcatttccgatcgaccttgttcgggaatttgccagacaaatattagagtctgtTgcatttatgcatgacctgcgacttattcacacagatctgaaacctgagaacattctccttgtttcatcagaatctatccgggtgcctgattataaggttacaatacggcccccaaaggatggttccttttTTaagaatcttccaaaatctagtgctatcaagctgattgattttggaagtacaacattcgaacaccaagaccacaattatgtggtatcaacaaggcattatcgtgcccctgaagttatccttggtcttgggtggaattattcatgtgatttGtggagtgtgggatgcattttagttgaactctgctcgGGTGAAGCTCTCTTTCAAACACATGAAAATTTGGAGCATTTGGCTATGATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGATCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGAGGGGGCTGCCTCACGGGAAAGCCTGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGGTACTTTGTTATCTGATAATCTGgGtaatgcaacatgttgatcattctgctggagatcttatagatcttcttcaaggccttcttcggtatgatcctgatgtgcgcctaaaggcacgtgaagctcttcaacacccgttctttacaagatgccacagaagatgtggttactga
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| Protein seq | MEAQWLAEYPHQGADKRPRKRPRLAWDVAPPLFQPPKAIPMLYCGQELINGNFATAFLPPPPIYYTGPPRNLSPPWRPDDKDGHYVFAVGETLHQDTVKLFFFWNRILSKMGEGTFGQVLECWDLEHQETVAIKIVRSLQKYREAAMIEIDVLQRLGKHDFTGSRCVQIRNWFDYRNHICIVFERLGPSLYDFLRKNSYRAFPIDLVREFARQILESVAFMHDLRLIHTDLKPENILLVSSESIRVPDYKVTIRPPKDGSFFKNLPKSSAIKLIDFGSTTFEHQDHNYVVSTRHYRAPEVILGLGWNYSCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPKHMIVRADRRAEKYFRRGLRLDWPEGAASRESLKAVWKLPRLQVLCYLIIWVMQHVDHSAGDLIDLLQGLLRYDPDVRLKAREALQHPFFTRCHRRCGY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0038710 | OsLiXu_01g0038710.02 | Chr01 | 37504081 | 37507994 | - | IsoSeq | ||
| CDS seq | ttgcgcggacgcgaacaccaccagaccagaccacctcctcctcgagcttcccctcCtccccctcttTccaaatttccccaatctcgcgtcgCttcttccccgaattcccCaacctcgcatcccgatTcctcccgcggatcgtgcggcgacctcgcccaaaatcccccgccggattggcctcgccgatggcttaatTggcgatttcgactctgcaatggaggcgcagtggctcgccgagtaccCgcaccagggcgcCgacaagcggccgcggaagcggccccgcctcgcctgggatgtcgcgcccccgctgttccagccccccaagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGACCGCTTTTCTGCCACCGCCACCAATCTATTATACAGGACCACCACGCAATCTTTCGCCTCCCTGGAGGCC
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| Protein seq | LRGREHHQTRPPPPRASPPPPLSKFPQSRVASSPNSPTSHPDSSRGSCGDLAQNPPPDWPRRWLNWRFRLCNGGAVARRVPAPGRRQAAAEAAPPRLGCRAPAVPAPQGNSYAILRAGTNQWKFCDRFSATATNLLYRTTTQSFASLEA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr01 | 37506361 | 37506872 | - | OsLiXu_01g0038710.01 | OsLiXu_01g0038710.02,OsLiXu_01g0038710.01 | All |
| A5 | Chr01 | 37504448 | 37504562 | - | OsLiXu_01g0038710.01 | OsLiXu_01g0038710.02,OsLiXu_01g0038710.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.071200 | 2.893123 | 4.223252 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0837900 | RBH | 5.648159 | 8.871888 | 17.080921 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g62080 | RBH | 2.059143 | 2.929243 | 2.176887 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0837900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0039570 | RBH | 2.712476 | 20.949581 | 15.663200 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0039030 | RBH | 1.517203 | 7.616956 | 8.338332 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0039450 | SBH | 7.220749 | 29.758963 | 24.035479 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0038920 | RBH | 0.752370 | 0.825692 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0038490 | RBH | 25.671669 | 25.423124 | 43.221260 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0594100 | RBH | 24.6541655 | 35.9253825 | 35.1104435 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0038160 | RBH | 0.534463 | 1.272851 | 3.952138 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0591200 | RBH | 17.6333325 | 21.0986525 | 29.9215705 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0038500 | RBH | 0.506375 | 0.604010 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0038460 | RBH | 1.577471 | 18.727606 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0038700 | RBH | 12.650743 | 39.474602 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0018740 | SBH | 0.236580 | 1.397931 | 0.463634 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0038530 | RBH | 0.882588 | 14.995417 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G039040 | RBH | 1.229282 | 7.441152 | 8.447887 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0038740 | RBH | 3.826754 | 38.752922 | 24.516844 |
