Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0818600 | OGI:01104550 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:34868412-34872484 | ||||||||
| Gene Symbol | RLCK48, OsRLCK48 | ||||||||||
| DNA seq | CAGAGTAACTTCACTCTTATAGGTTCTCAAAAAGTTGACCACCAAACAACCGCTTCTTAAAATTTAAACTCGCCAAACAGGATCTAAACGTTGGTTGCAAGCATTCATGATTCATGATTCATCTATGGGTTAATTACAACAGCGGCCAAATCACCCACTGTAAAGACCAAGAAATCACCTGGAACAGCAGCAAGACCACTCACTCACTCACTCACTCAGGAGTACGTGCTACTACCATACAGCTAATTTACACCGGAAGAAAATTCCCTTCCATTTTACACCCGACGACGCGAAAAGGAGAAAAAAAAACGTTACGTTAGCCCGGCACGCAACGCTACCGGGGAGCCACCGTGCCGGAGGGGATGCCGCTCTTGGAGTTGGCGTGGCCGCCGCTGCCGGAGGAGATGAAGAGGGCCCCCGTGGTCGACGACGACGACAGCGGCCCGGTCGCCGTCAGGGAGGTGGAGGTGGCCGACTGATCGCCGTACTCCGGCAGGAGCTCCTCTCCCTCCGGCAGCGCGCTCCGGATGGCGTCCAGCTCCCTGACGACGTCGGCCATGGACGGCCTCGCGTCGGTCTCGTCCTTGCAGCACTTGACGGCCAGCGAGGCCAACCTCGCCACGCACTCCGGCGAGCTGGAGGAGGATATCCGCTCGTCGATCACTCCGGCGATCTCGCCTGATTGGTATGCCGTGTTCACCTGCGACAAAAAAAATAAGGTGTTCAGTTATAAGTTTATGGCTTCTTGATGACAATATGACATTGTTCAGATGGATTAGTTTTTGCACAAAGATGAAGGATCAGGTTGGAAACATTTCCTTACCTCTCTGACAATGTTCTTGCCATGCTGGATTGGCTTCATCCCAGTCAATAGCTCTAGAAGCACGACGCCGAGGCTGTACACGTCGCTCTTGTCTGTCAGTTTGTGAGTTAGGAAGTACTCTGGATCAAGGTAGCCCTGCCACCAAAAGGAACAATGGATAGTTATTGTAGAGTTTCGTGTTGTCTGACGAGGAACACAAATGTGGGATCATGGTGAGTTTCAGTGTTGCCAGGTGTAGTGGCACTTACTGGGGTCCCCTTAACAACGGTGGAGATATGAGCTGGCATGGTTCCATCGACATCCGGTACTGGCGCAAGCCTTGAAAGACCAAAGTCTGCGACTTTCGCTACAAATTTGGAGTCCAGGAGGATGTTGCTGGCCTTAACATCACGGTGAAATATAGGAGGATCTGCTTCGGTGTGTAGATAGAGGATTCCCTTTGCAGCACCCAGGGCAATATGTATCCTCTGGCTAAAGTTCAGAGGTCTTCTTGACTTGGCTGTGAAAAAGCGCAATACATATAAGGTGCTTGGCATCCAACGCAAGTTTAAAACTATGTATTTTTTATAAAGAAAAAGCAAAATATACAACATATAAATTTTAGCAGATGGTCTGGAATCATAGTCAATATGTAAAAGTGCGCAATGGATGTATGGAGAAAAATTCAGATGCATTTAAACGTGTCAATGGTCACTTACCAGAAAGGTGATCACGCAGAGTACCATTCGGCATGAACTCATACACCAGCATCTGTGAAACATAGTTCTATGTGAGCAACGATTATTACAGATCTCTTTTGTATATATGGCTAATTTAGCAGATTTGGGCAGCTGTGGAACTCTCATTTTTAAGAACGTTTATCACAACATCACAGTTTATAGAGCAAATTAAGTAACTCAAAGATTGAGAGGCACCTGTTCATCTTCTTCATCACAATAGCCAACCAGAGAAACTAAATTACGATGATGTAGTCTTGATAGCAATTCTATTTCTGTGCAGAACTCCTTTGAACCTTGAAGAGAACCTTCGTGTGCCCGTTTGATTGCAACAGCTGTTCCATCAGTTAGATTTCCTTTATAAACTTTTCCATAACCCCCTTGACCAACTTGAGCTGAATCAGTAAAATCATTTGTCGCTGCAGCCATTTCATCAAATGTGAAGCATCTCACACCATCAACCTTGACAGAATACCTTGAGAGTACTGCACGATGATATATTGATATGTCTTTAGATGCTGTAGTTTGAACTGTCTACTACAAGCCTAAAAAATTACTTGCTACAGCACTGCAACATTTTAGATTTTCTTTCACCTATAAAAAATCCCAATCTAATTTATTCAAATGAGGTCATGGAAAGAAGAAACACAGCTCAGTTACTACTTCCAATATTGCAAAGTATTAGAAACTACTAAATGATGCTCCTACACATGATTGGTTCTGATATTTCTTTTTCAGCTTAGGTTTCTGTTCCTAAGGTAGCCACTGCTACCTATGTAGCACATGGAAAGCTGTCTGCATAAAAAACATGATGTCTTACATGACCGCCTAGATGTAGTTCGACGTTTGGAACGTCTTCTCATTATAAATATTGTAGTAAACACAGACGCTGCAATGGAAGCAGTGATTGTCCCTGCCAAAATACCAGCTAATGCGCCCCTCTTTAGACCTGATGACGCCACAGTTGGGAATTCTGCAAAATAAATTAAAAAGATATAAAAATAAGGGTAATTTTACCATCCTTAAAAAGGTAACTAGAGGTACCATATTTTTTAGTGTAAAATTTGGTATCTTCAGATATCAAAAAAAATTAGTGTAAAATTTAGGTACCTCAAGGTACTTTCTCAAGAACCGTAAAATTTCTCTAAAAATAAAGCCGCAATATAGTGGGTTACTAAAATGGGTAGAATATTTTGTTGAGCAATCTGAAATGTGTAGTGGTGAACTATAAGCCAAGAAGTTATATATTCTTAATTCCTTGGTTCAAAACCTTCATAATCATTTTTTTTTTAATTCTTGGGCAGTGTTTCACCCGTTGAAGACCTTGAGGAAATGCATATCGGGGTATGGGTGTGAAAGGGCATGTAGCCTAGTGGTTGCAATGACCTGAGTAGTACCCTAAGGTCCTGAGTTCAAATCTCCATAGGAGCGAATTTCGGATTGGGTTATTTGATGGCTAAGTTCCCTATTTGATAGGCCAAGTTCCTAAATTAAAATAGCTGCATATATTCGGTTGGATATAGAGACCGGGTAAAAAATACCCTTCTCTAAAAAAATATATATTTCCATTCATCTATCCTCTCTTGAAATATTGTGGCAGGGTAAAAAATACCCTTCTCTAAAAAAATATATATTTCCATTCATCTATCCTCTCTTGAAATATTGTGACAAATTGTCATCTAGAAACTAACCATGATGACAAATATGTCGTAAGATGAAAAGTAGTAACCAAGACTGATTATGTTGCATGAGATCATTATCTACTACTCCCTCAGTTTCATATTATAAGTCGTTTGACTTTTTTTTAGTCAAACTTTATTAAGTTTGACTAAGTTTATAGAAAATTTTAGCATCTAAAATATGAAATTAGTTTTATTAAATCTAATATTGAATATAGTTTGATAATATGTTTGTTTTGTATTGAAAATACTATTATATTTTTCTATAAATTTAGTCAAACCTAAAGAAGTTTGACTAGGAAAAAAGTCAAATGACTTATAATATGGAACAGATGGAGTACTATGTATCATGTTCTCTATGAATACCATAGGGCAGAAAAATCAGGTTAAAAATGAAAACTATGTATCCTTTTGTCTTGGCAAAAGATTTACACATATGGTGTGACACATTTCAACTGTTAGTTCATAATGGCATCCTTTGGTGGAAAAGTAAATTGTACATACCATCTTCATAGGAACCAAGCGTGAAGTTGAGAAGTTCATACGGACCAAACACATTTGATAGAGTAATCTCCCATCCAGCAAGTAGATGTCTGAGCCGCACAACCTCGGACGTATTGAATAAATTTGTATTGTTTGGAAATAACTTCAAATGCATATTCAGCCTTGGACCGACCTCCCATATGTACCGTTCCATGTATATTTGGTAATCAGCCAGGACCAACAGATGGGCTAAGTTTTTCTGAAAGTCTTCCTTATAGGGACGGAAATCTGAGATCCCTGGACTCTTCAACCGAAATCCAACTCCCAGAGGCACAGCACAGAAACAAGGTAGGGGTGATGATGGATTGTATT
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| CDS seq | TACAATCCATCATCACCCCTACCTTGTTTCTGTGCTGTGCCTCTGGGAGTTGGATTTCGGTTGAAGAGTCCAGGGATCTCAGATTTCCGTCCCTATAAGGAAGACTTTCAGAAAAACTTAGCCCATCTGTTGGTCCTGGCTGATTACCAAATATACATGGAACGGTACATATGGGAGGTCGGTCCAAGGCTGAATATGCATTTGAAGTTATTTCCAAACAATACAAATTTATTCAATACGTCCGAGGTTGTGCGGCTCAGACATCTACTTGCTGGATGGGAGATTACTCTATCAAATGTGTTTGGTCCGTATGAACTTCTCAACTTCACGCTTGGTTCCTATGAAGATGAATTCCCAACTGTGGCGTCATCAGGTCTAAAGAGGGGCGCATTAGCTGGTATTTTGGCAGGGACAATCACTGCTTCCATTGCAGCGTCTGTGTTTACTACAATATTTATAATGAGAAGACGTTCCAAACGTCGAACTACATCTAGGCGGTCATTACTCTCAAGGTATTCTGTCAAGGTTGATGGTGTGAGATGCTTCACATTTGATGAAATGGCTGCAGCGACAAATGATTTTACTGATTCAGCTCAAGTTGGTCAAGGGGGTTATGGAAAAGTTTATAAAGGAAATCTAACTGATGGAACAGCTGTTGCAATCAAACGGGCACACGAAGGTTCTCTTCAAGGTTCAAAGGAGTTCTGCACAGAAATAGAATTGCTATCAAGACTACATCATCGTAATTTAGTTTCTCTGGTTGGCTATTGTGATGAAGAAGATGAACAGATGCTGGTGTATGAGTTCATGCCGAATGGTACTCTGCGTGATCACCTTTCTGCCAAGTCAAGAAGACCTCTGAACTTTAGCCAGAGGATACATATTGCCCTGGGTGCTGCAAAGGGAATCCTCTATCTACACACCGAAGCAGATCCTCCTATATTTCACCGTGATGTTAAGGCCAGCAACATCCTCCTGGACTCCAAATTTGTAGCGAAAGTCGCAGACTTTGGTCTTTCAAGGCTTGCGCCAGTACCGGATGTCGATGGAACCATGCCAGCTCATATCTCCACCGTTGTTAAGGGGACCCCAGGCTACCTTGATCCAGAGTACTTCCTAACTCACAAACTGACAGACAAGAGCGACGTGTACAGCCTCGGCGTCGTGCTTCTAGAGCTATTGACTGGGATGAAGCCAATCCAGCATGGCAAGAACATTGTCAGAGAGGTGAACACGGCATACCAATCAGGCGAGATCGCCGGAGTGATCGACGAGCGGATATCCTCCTCCAGCTCGCCGGAGTGCGTGGCGAGGTTGGCCTCGCTGGCCGTCAAGTGCTGCAAGGACGAGACCGACGCGAGGCCGTCCATGGCCGACGTCGTCAGGGAGCTGGACGCCATCCGGAGCGCGCTGCCGGAGGGAGAGGAGCTCCTGCCGGAGTACGGCGATCAGTCGGCCACCTCCACCTCCCTGACGGCGACCGGGCCGCTGTCGTCGTCGTCGACCACGGGGGCCCTCTTCATCTCCTCCGGCAGCGGCGGCCACGCCAACTCCAAGAGCGGCATCCCCTCCGGCACGGTGGCTCCCCGGTAG
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| Protein seq | YNPSSPLPCFCAVPLGVGFRLKSPGISDFRPYKEDFQKNLAHLLVLADYQIYMERYIWEVGPRLNMHLKLFPNNTNLFNTSEVVRLRHLLAGWEITLSNVFGPYELLNFTLGSYEDEFPTVASSGLKRGALAGILAGTITASIAASVFTTIFIMRRRSKRRTTSRRSLLSRYSVKVDGVRCFTFDEMAAATNDFTDSAQVGQGGYGKVYKGNLTDGTAVAIKRAHEGSLQGSKEFCTEIELLSRLHHRNLVSLVGYCDEEDEQMLVYEFMPNGTLRDHLSAKSRRPLNFSQRIHIALGAAKGILYLHTEADPPIFHRDVKASNILLDSKFVAKVADFGLSRLAPVPDVDGTMPAHISTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVLLELLTGMKPIQHGKNIVREVNTAYQSGEIAGVIDERISSSSSPECVARLASLAVKCCKDETDARPSMADVVRELDAIRSALPEGEELLPEYGDQSATSTSLTATGPLSSSSTTGALFISSGSGGHANSKSGIPSGTVAPR |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At1g06840 [UniProtKB/Swiss-Prot:C0LGD7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0818600 | OsNip_01t0818600-02 | Chr01 | 34868412 | 34869689 | - | RAP2018-11-26 | ||
| CDS seq | GCCCTGGGTGCTGCAAAGGGAATCCTCTATCTACACACCGAAGCAGATCCTCCTATATTTCACCGTGATGTTAAGGCCAGCAACATCCTCCTGGACTCCAAATTTGTAGCGAAAGTCGCAGACTTTGGTCTTTCAAGGCTTGCGCCAGTACCGGATGTCGATGGAACCATGCCAGCTCATATCTCCACCGTTGTTAAGGGGACCCCAGGCTACCTTGATCCAGAGTACTTCCTAACTCACAAACTGACAGACAAGAGCGACGTGTACAGCCTCGGCGTCGTGCTTCTAGAGCTATTGACTGGGATGAAGCCAATCCAGCATGGCAAGAACATTGTCAGAGAGGTGAACACGGCATACCAATCAGGCGAGATCGCCGGAGTGATCGACGAGCGGATATCCTCCTCCAGCTCGCCGGAGTGCGTGGCGAGGTTGGCCTCGCTGGCCGTCAAGTGCTGCAAGGACGAGACCGACGCGAGGCCGTCCATGGCCGACGTCGTCAGGGAGCTGGACGCCATCCGGAGCGCGCTGCCGGAGGGAGAGGAGCTCCTGCCGGAGTACGGCGATCAGTCGGCCACCTCCACCTCCCTGACGGCGACCGGGCCGCTGTCGTCGTCGTCGACCACGGGGGCCCTCTTCATCTCCTCCGGCAGCGGCGGCCACGCCAACTCCAAGAGCGGCATCCCCTCCGGCACGGTGGCTCCCCGGTAG
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| Protein seq | ALGAAKGILYLHTEADPPIFHRDVKASNILLDSKFVAKVADFGLSRLAPVPDVDGTMPAHISTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVLLELLTGMKPIQHGKNIVREVNTAYQSGEIAGVIDERISSSSSPECVARLASLAVKCCKDETDARPSMADVVRELDAIRSALPEGEELLPEYGDQSATSTSLTATGPLSSSSTTGALFISSGSGGHANSKSGIPSGTVAPR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0818600 | OsNip_01t0818600-01 | Chr01 | 34868491 | 34872484 | - | RAP2018-11-26 | ||
| CDS seq | TACAATCCATCATCACCCCTACCTTGTTTCTGTGCTGTGCCTCTGGGAGTTGGATTTCGGTTGAAGAGTCCAGGGATCTCAGATTTCCGTCCCTATAAGGAAGACTTTCAGAAAAACTTAGCCCATCTGTTGGTCCTGGCTGATTACCAAATATACATGGAACGGTACATATGGGAGGTCGGTCCAAGGCTGAATATGCATTTGAAGTTATTTCCAAACAATACAAATTTATTCAATACGTCCGAGGTTGTGCGGCTCAGACATCTACTTGCTGGATGGGAGATTACTCTATCAAATGTGTTTGGTCCGTATGAACTTCTCAACTTCACGCTTGGTTCCTATGAAGATGAATTCCCAACTGTGGCGTCATCAGGTCTAAAGAGGGGCGCATTAGCTGGTATTTTGGCAGGGACAATCACTGCTTCCATTGCAGCGTCTGTGTTTACTACAATATTTATAATGAGAAGACGTTCCAAACGTCGAACTACATCTAGGCGGTCATTACTCTCAAGGTATTCTGTCAAGGTTGATGGTGTGAGATGCTTCACATTTGATGAAATGGCTGCAGCGACAAATGATTTTACTGATTCAGCTCAAGTTGGTCAAGGGGGTTATGGAAAAGTTTATAAAGGAAATCTAACTGATGGAACAGCTGTTGCAATCAAACGGGCACACGAAGGTTCTCTTCAAGGTTCAAAGGAGTTCTGCACAGAAATAGAATTGCTATCAAGACTACATCATCGTAATTTAGTTTCTCTGGTTGGCTATTGTGATGAAGAAGATGAACAGATGCTGGTGTATGAGTTCATGCCGAATGGTACTCTGCGTGATCACCTTTCTGCCAAGTCAAGAAGACCTCTGAACTTTAGCCAGAGGATACATATTGCCCTGGGTGCTGCAAAGGGAATCCTCTATCTACACACCGAAGCAGATCCTCCTATATTTCACCGTGATGTTAAGGCCAGCAACATCCTCCTGGACTCCAAATTTGTAGCGAAAGTCGCAGACTTTGGTCTTTCAAGGCTTGCGCCAGTACCGGATGTCGATGGAACCATGCCAGCTCATATCTCCACCGTTGTTAAGGGGACCCCAGGCTACCTTGATCCAGAGTACTTCCTAACTCACAAACTGACAGACAAGAGCGACGTGTACAGCCTCGGCGTCGTGCTTCTAGAGCTATTGACTGGGATGAAGCCAATCCAGCATGGCAAGAACATTGTCAGAGAGGTGAACACGGCATACCAATCAGGCGAGATCGCCGGAGTGATCGACGAGCGGATATCCTCCTCCAGCTCGCCGGAGTGCGTGGCGAGGTTGGCCTCGCTGGCCGTCAAGTGCTGCAAGGACGAGACCGACGCGAGGCCGTCCATGGCCGACGTCGTCAGGGAGCTGGACGCCATCCGGAGCGCGCTGCCGGAGGGAGAGGAGCTCCTGCCGGAGTACGGCGATCAGTCGGCCACCTCCACCTCCCTGACGGCGACCGGGCCGCTGTCGTCGTCGTCGACCACGGGGGCCCTCTTCATCTCCTCCGGCAGCGGCGGCCACGCCAACTCCAAGAGCGGCATCCCCTCCGGCACGGTGGCTCCCCGGTAG
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| Protein seq | YNPSSPLPCFCAVPLGVGFRLKSPGISDFRPYKEDFQKNLAHLLVLADYQIYMERYIWEVGPRLNMHLKLFPNNTNLFNTSEVVRLRHLLAGWEITLSNVFGPYELLNFTLGSYEDEFPTVASSGLKRGALAGILAGTITASIAASVFTTIFIMRRRSKRRTTSRRSLLSRYSVKVDGVRCFTFDEMAAATNDFTDSAQVGQGGYGKVYKGNLTDGTAVAIKRAHEGSLQGSKEFCTEIELLSRLHHRNLVSLVGYCDEEDEQMLVYEFMPNGTLRDHLSAKSRRPLNFSQRIHIALGAAKGILYLHTEADPPIFHRDVKASNILLDSKFVAKVADFGLSRLAPVPDVDGTMPAHISTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVLLELLTGMKPIQHGKNIVREVNTAYQSGEIAGVIDERISSSSSPECVARLASLAVKCCKDETDARPSMADVVRELDAIRSALPEGEELLPEYGDQSATSTSLTATGPLSSSSTTGALFISSGSGGHANSKSGIPSGTVAPR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 12.118743 | 13.215565 | 7.313325 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0481100 | RBH | 23.700064 | 28.238277 | 19.662548 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g60280 | RBH | 7.389201 | 6.163492 | 1.330213 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0818600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0038190 | SBH | 0.849756 | 17.877546 | 6.296455 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0037660 | SBH | 0.919378 | 8.692753 | 5.077617 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0038070 | SBH | 6.270092 | 20.618416 | 14.957815 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0037460 | SBH | 1.148359 | 0.398436 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0037140 | SBH | 20.824051 | 33.624878 | 38.672276 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0576700 | SBH | 20.3235165 | 60.5722005 | 6.044853 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0036840 | SBH | 2.318073 | 2.420932 | 3.026834 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0572900 | RBH | 8.713385 | 43.6028345 | 2.387677 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0037080 | SBH | 1.735568 | 1.102579 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0037100 | SBH | 2.335505 | 21.069380 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0037330 | SBH | 21.543453 | 30.620211 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0037400 | RBH | 4.821440 | 2.908548 | 3.678123 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0037160 | SBH | 0.920515 | 6.858920 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G037690 | SBH | 2.116384 | 4.373876 | 6.949629 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0037370 | SBH | 9.268299 | 43.375332 | 12.217502 |
