Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0637100 | OGI:01078850 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:25541512-25542937 | ||||||||
| Gene Symbol | OsFbox029, OsFbox29, Os_F0384 | ||||||||||
| DNA seq | AAGTTCAACGAAGAGTATAACAGATCACTCCCTAAAAGATGTATGATCAGGAGAGCTTCGTCGAAGCAAAAAAAAAAAAAATGACAACCTTTGCATTGGAGATCAAATCAAAACCATAAATATGGAAACTCCTGAGATGCTTTACAGATTGGACAGAACCCCGACGTAGCGATGATAATTTGTGTACACGAACTTGACTGTTATGCTGATGCAGAATCTAGTGGTATCTACTTCTGTGTTTGTTAAAACTACACTACAGATCAACATTTGGAGATGGCATCTTCCAGTAATTCCAGGAATTGTAGTCTTCCTGCATGGCGTCATCATTGATGATCAGCAGTTCAGCACAAAAAGAAATTTACATGTTATGGAGTCCGACCATCCATGAGTACAACACAATCACACTAGCTGCCCTTTGCTCCCAGCAGTAACCTGTATGGCTCAGGCAGCATAGAACTGGAGTTGACTATGCACTAAGGATAAAAATAGTTTGTCCAGGATAGTATGAAAGAACCAAAGAAAAAGAAAACATGAATGTGCATGTTTTTCGGTCTAGCTAATCTCATGAAAAGTTTGCACACATAACATATATATATTCTCTGTGGCCTTTTATCCATGTGCAGAAAACACGGTTACTTAACTTGGTAACCTTTCTGTAACTATGCAGTATGCATCCACATCAGATCAACTGACATCAATTTTGCAAGAAAAAATATTGGTGCCTGGGATTCTGGACAGCAAGTTCACACACATAGCTAGTAAATACTTCATCCCAAAATAAGTGCCCCTTTTAGATTGTTTGGTAGAGATTAAGGTTTAAGAACAAAACAATATAGTGCCCATTATTAAATGATGTGCGTTTGGCAGTGGGAGGGTGATTAGAGGTAAGATGGGAAGAAATTTTGAATTCGAAAGGGGCACTTATTTTGGGACGACGTTGATCGTCGGCCATAGTAATTGCTACGGCAGAGAAGACCTTTCATGCATTACTTAAAAAGTACGTACTGCAAGAAGGGAAGAATGACAAGCTAACCTGCACAACAAGAGTGTTTGGAGGGAACATATCATGGATAAGGGTATGTAAGGAGGTATAGGAGTTCAACAGAACTGTTTATGGCTACTCCCCCCCTTCACGCACACAGGATGACTATAAAAAGGCAATACAAGCATGGGATCACTAACTTTTTAACTGGTGTAATAGACATACCTTCGGGTTGATGATAAAGATTTTCCCTTTTGGAATTCCCATCTTTTTGTAACTAAGCTTATCTGTATCTCTGTTGACAAATCCAGAATAAAATGGATTGTAATCAGAAGGGAGGAGTGCATGCCCTGCCGAAGAACAAAAATTAAAGAATTTCAAGAACCTGCTGTGATACCAACATGGAGTTTCAGGTCTCTCGAAGAATCTAAATAATGTGTGTTT
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| CDS seq | AAACACACATTATTTAGATTCTTCGAGAGACCTGAAACTCCATGTTGGTATCACAGCAGGTTCTTGAAATTCTTTAATTTTTGTTCTTCGGCAGGGCATGCACTCCTCCCTTCTGATTACAATCCATTTTATTCTGGATTTGTCAACAGAGATACAGATAAGCTTAGTTACAAAAAGATGGGAATTCCAAAAGGGAAAATCTTTATCATCAACCCGAAGGGGGGGAGTAGCCATAAACAGTTCTGTTGA |
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| Protein seq | KHTLFRFFERPETPCWYHSRFLKFFNFCSSAGHALLPSDYNPFYSGFVNRDTDKLSYKKMGIPKGKIFIINPKGGSSHKQFC |
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| Function | Phosphatidate phosphatase PAH1 [UniProtKB/Swiss-Prot:Q9SF47] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0637100 | OsNip_01t0637100-00 | Chr01 | 25541512 | 25542937 | - | RAP2018-11-26 | ||
| CDS seq | AAACACACATTATTTAGATTCTTCGAGAGACCTGAAACTCCATGTTGGTATCACAGCAGGTTCTTGAAATTCTTTAATTTTTGTTCTTCGGCAGGGCATGCACTCCTCCCTTCTGATTACAATCCATTTTATTCTGGATTTGTCAACAGAGATACAGATAAGCTTAGTTACAAAAAGATGGGAATTCCAAAAGGGAAAATCTTTATCATCAACCCGAAGGGGGGGAGTAGCCATAAACAGTTCTGTTGA
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| Protein seq | KHTLFRFFERPETPCWYHSRFLKFFNFCSSAGHALLPSDYNPFYSGFVNRDTDKLSYKKMGIPKGKIFIINPKGGSSHKQFC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g45020 | RBH | 0.058614 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0637100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0026570 | RBH | 0.105484 | 4.366307 | 1.408566 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0026180 | RBH | 0.093702 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0026530 | RBH | 0.000000 | 4.927014 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0025840 | RBH | 0.0 | 0.013411 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0025600 | RBH | 1.828895 | 8.595649 | 5.299559 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0025260 | RBH | 0.169647 | 0.374669 | 0.329702 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0025550 | RBH | 0.048675 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0025480 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0025790 | RBH | 0.0 | 11.129697 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0025790 | RBH | 0.000000 | 0.569977 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0025650 | RBH | 0.275788 | 2.431330 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G025890 | RBH | 0.000000 | 4.301867 | 0.434416 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0025660 | RBH | 0.000000 | 6.519798 | 1.477446 |
