Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0635550 | OGI:01078670 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:25476388-25477555 | ||||||||
| Gene Symbol | ZHD5, OsZHD5 | ||||||||||
| DNA seq | AATCCATGCTCTGAATGGTCAATTTTTTTTTGATCTGTTTGGCTTACAAAAATATACTAACAGTGTAAGACAGTAACGAATCAGAGCTCACAGCTACGCAAACGCGGGATGCCAAAATCTAACCCACCTATTGGTCTTAAAATGGACTTTTTTCTATCTATAAGAAGAAGAATCTAATCCAACCTATATTGCATCTACCGTACCAATTATTCGGTAATTAAAAGGTCAGAAGAAGAATAATAATTTGATTAGTACAAGAATAGGAAAAGAACATCAAATGGCAGGAAGGAGGGGGGCTCTACCTTCCCCGCTCATTTCGATCGAACCTTTGTCTCCTCCCATACATGGCATCCTGCCTACTGCTGCTGTTCCTGCCTGTTCTCCTGCTGCTGTTTCTGCTTGAAGCTATGCTTGTTGTTGTGCATCCACACCTTGAGCGCTTGCCTCCGGACGCCGACCTGCGCGCAGAAGTGCTCCACCGTCGCCTCCTCCTGCCGCTGGATCCTCCACCCCACGCGCTCCGCGAACGCCAGCATCTGCTCCTTCTGCTCCCGCGTGAACGTCGTGCGTGACCGCCTCCGTGGCTGCACCGGCGAGGGCCGCAGCCGCTCGTCGCTGGAGGACGCGGTCGTGGTGCCAGTGCCGCCGCTGGGCGTGCCGTAGCCAGGGAACGGCAAACCTTGCTTGCTGGCGGCCGCTGCAGGCGGCAGCAGCAGCGCGGGTGGTGCGCGCGAGTTGATGGACGCCGGCAGGTGCAGCTGCGGCAGCCGTGCTGCGCCCGCGCGGCCCGGGGAAGGGTCCCGGCGGTGGAAGCTGCGGTGGCAGCCGCAGGCCGCGCAGGCGAGCGGCTCCTCGGTGGACGCCGGCATGAACTCGCCGCAGCCATCCACGACGTGGCCGCCCGAGGCCGCCGCGTGGTTCCGGAGGCACTCGTGGTACCGGCACCTGATCGTCTCGGGGGCGGCCGACGTCAGCACGCGGTGAGGCGGCGTGGGCGGGGATGAGCAGCCACCGCCCACGTCGCCGGCGTCCTCCTCGTGCTCGCTGAGCTCCATGCCAGCCACGTACGTGCAGTGTGCAAAGCTAGCTAGCGTTGCTTGCCGCGGCGGGCTCGGTGGGGGAATAGCGTGTAATACGTGGTCGTCGAGGTGGGGATGCGTGTGATCAT
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| CDS seq | ATGGAGCTCAGCGAGCACGAGGAGGACGCCGGCGACGTGGGCGGTGGCTGCTCATCCCCGCCCACGCCGCCTCACCGCGTGCTGACGTCGGCCGCCCCCGAGACGATCAGGTGCCGGTACCACGAGTGCCTCCGGAACCACGCGGCGGCCTCGGGCGGCCACGTCGTGGATGGCTGCGGCGAGTTCATGCCGGCGTCCACCGAGGAGCCGCTCGCCTGCGCGGCCTGCGGCTGCCACCGCAGCTTCCACCGCCGGGACCCTTCCCCGGGCCGCGCGGGCGCAGCACGGCTGCCGCAGCTGCACCTGCCGGCGTCCATCAACTCGCGCGCACCACCCGCGCTGCTGCTGCCGCCTGCAGCGGCCGCCAGCAAGCAAGGTTTGCCGTTCCCTGGCTACGGCACGCCCAGCGGCGGCACTGGCACCACGACCGCGTCCTCCAGCGACGAGCGGCTGCGGCCCTCGCCGGTGCAGCCACGGAGGCGGTCACGCACGACGTTCACGCGGGAGCAGAAGGAGCAGATGCTGGCGTTCGCGGAGCGCGTGGGGTGGAGGATCCAGCGGCAGGAGGAGGCGACGGTGGAGCACTTCTGCGCGCAGGTCGGCGTCCGGAGGCAAGCGCTCAAGGTGTGGATGCACAACAACAAGCATAGCTTCAAGCAGAAACAGCAGCAGGAGAACAGGCAGGAACAGCAGCAGTAG
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| Protein seq | MELSEHEEDAGDVGGGCSSPPTPPHRVLTSAAPETIRCRYHECLRNHAAASGGHVVDGCGEFMPASTEEPLACAACGCHRSFHRRDPSPGRAGAARLPQLHLPASINSRAPPALLLPPAAAASKQGLPFPGYGTPSGGTGTTTASSSDERLRPSPVQPRRRSRTTFTREQKEQMLAFAERVGWRIQRQEEATVEHFCAQVGVRRQALKVWMHNNKHSFKQKQQQENRQEQQQ |
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| Function | Zinc-finger homeodomain protein 5 [UniProtKB/Swiss-Prot:Q5VM82] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0635550 | OsNip_01t0635550-00 | Chr01 | 25476388 | 25477555 | - | RAP2018-11-26 | ||
| CDS seq | ATGGAGCTCAGCGAGCACGAGGAGGACGCCGGCGACGTGGGCGGTGGCTGCTCATCCCCGCCCACGCCGCCTCACCGCGTGCTGACGTCGGCCGCCCCCGAGACGATCAGGTGCCGGTACCACGAGTGCCTCCGGAACCACGCGGCGGCCTCGGGCGGCCACGTCGTGGATGGCTGCGGCGAGTTCATGCCGGCGTCCACCGAGGAGCCGCTCGCCTGCGCGGCCTGCGGCTGCCACCGCAGCTTCCACCGCCGGGACCCTTCCCCGGGCCGCGCGGGCGCAGCACGGCTGCCGCAGCTGCACCTGCCGGCGTCCATCAACTCGCGCGCACCACCCGCGCTGCTGCTGCCGCCTGCAGCGGCCGCCAGCAAGCAAGGTTTGCCGTTCCCTGGCTACGGCACGCCCAGCGGCGGCACTGGCACCACGACCGCGTCCTCCAGCGACGAGCGGCTGCGGCCCTCGCCGGTGCAGCCACGGAGGCGGTCACGCACGACGTTCACGCGGGAGCAGAAGGAGCAGATGCTGGCGTTCGCGGAGCGCGTGGGGTGGAGGATCCAGCGGCAGGAGGAGGCGACGGTGGAGCACTTCTGCGCGCAGGTCGGCGTCCGGAGGCAAGCGCTCAAGGTGTGGATGCACAACAACAAGCATAGCTTCAAGCAGAAACAGCAGCAGGAGAACAGGCAGGAACAGCAGCAGTAG
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| Protein seq | MELSEHEEDAGDVGGGCSSPPTPPHRVLTSAAPETIRCRYHECLRNHAAASGGHVVDGCGEFMPASTEEPLACAACGCHRSFHRRDPSPGRAGAARLPQLHLPASINSRAPPALLLPPAAAASKQGLPFPGYGTPSGGTGTTTASSSDERLRPSPVQPRRRSRTTFTREQKEQMLAFAERVGWRIQRQEEATVEHFCAQVGVRRQALKVWMHNNKHSFKQKQQQENRQEQQQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.777024 | 6.016349 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0579300 | RBH | 0.809898 | 0.342667 | 0.438083 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g44430 | SBH | 0.302908 | 0.549414 | 4.301448 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0635550 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0026480 | RBH | 0.187816 | 0.0 | 9.952855 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0026110 | SBH | 0.586170 | 0.0 | 27.302847 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0026460 | RBH | 3.658129 | 0.0 | 54.185791 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0025770 | RBH | 0.035243 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0025510 | SBH | 20.111660 | 3.368976 | 12.601832 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0428300 | RBH | 17.893146 | 1.200215 | 0.1725765 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0417700 | RBH | 11.956823 | 0.9372905 | 3.326851 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0025470 | SBH | 0.844536 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0025410 | RBH | 1.765374 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0025690 | SBH | 8.594852 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0025710 | RBH | 2.963071 | 0.0 | 3.135021 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0025560 | RBH | 1.726186 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
