Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0604150 | OGI:01013090 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:23787960-23789747 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGATGCCTCTGCTGCATCCATGCTCTGGACTCTGATCATCATCCTCGCCGCCGCAGCCGCTGCCTCCTCTGTCCATCCACCACAGCAGCAGAGCTATGGCGTCGGCTGCATCGCGGCGGAGCGGGCGGCATTGCTCTCCTTCAAAGAAGGTGTCATGGCCGACCCGCTGAGGCTCCTCGACTCATGGCAGGGTGCAGGAGACTGCTGTCGGTGGAACGGCGTCGGGTGCAGCAACAGGACCGGCCATGTCGTCAAGCTCGACCTCCGCAACACTCTCTACTGGGATGACCAGCGCCAAGTTAGACTGGACAACCCTCACGCCATGCGTGGACAGGTAAGCACCTCCCTGCTTGCCCTGAGGCGTTTGAAGTATCTTTATCTCAGCGGGAACAACCTTGGAGGACCGGGTATAGCCATACCATCGTTCTTGGGGTCTCTCGAGAGCCTGGTCTATCTCAACCTCTCCTGTATCGATTTCTTTGGAGAGGTGCCTACTCAGCTTGGCAATCTCTCCCGGCTGTCCTACCTCGACGTTGGCAGCATGTATTATTCTGGACAGATTTTCTCATCGGATCTCTCCTGGCTGGGACGCCTCTCTTCACTGAAGTATCTTGACATGAGCGGTGTCAATCTCAGCATGGTTTCTGACTGGGCTCATGTGGTCAATATGCTTCCCAATTTGAGAGTTCTCAATCTCGAACTGTGTCAACTCACGAGATCAAACCCACCACTTCTGCATTCCAACCTTACAGTTCTTGAGAAGCTCGTTCTTTCTTCCAACAACTTCTATGGACCACTTGCTACTAACTGGTTCTGGGGTATAACCACCCTTAGAACCCTCGAAGTGGAGTTCTGTTCCCTATATGGCCCTCTTCCTGATAGCTTGGGAAACATGACTGCACTTCAAGTTCTTGACATGCAAGATAATGATAATATCACAGGAATGTTTCCACCAACTCTGAAGAATCTATGCAATTTGCAAGAAGTCTTCACTGGGACTAACCTGAGCGGGGACATAACAGAACAGATGGAGAGGCTGCCAAAGTGTGCATGGGACAAATTGCAGGCATTAAATCTGGATGCAACCAACATGACAGGCAATCTTCCAGTTTGGTTGGTAAACTTGACCAACTTGAAGGACCTTAGTGTCTCAGGGAACCAGCTTAGTGGGCCTGTGCCTTTGGGGCTTGGAGCTCTTACTAAGTTGACTATATTGTATCTAGGCCACAATAACTTGACTGGTATCATATCAGAAGACTATCTTGCTAATCTTTGCAATATGGTTATATTGGACTTGAGCTACACTTCTTTAGAGGTTGTTGTGGGTTCCACATGGACTCCTCCATTCAAGTTAATCAGAGCACAACTGGCTTCATGTCAACTGGGTCCGGGATTTCCTATCTTGTTTAAACACCAAAAGGGCATTATCTACATTGATGTTTCAAATGCAGGCATAGCCGATGCAATCCCAAGTTGGTTTTGGGATGAAATTTCCTATGCATTTTATGTGGATATGTCTCACAATCAAATTGATGGAGAATTACCAGCCAAACTTGAAGCGAGGACAAGGCAAGAATTGCACCTCAATTCAAACCAGCTAAAGGGCTCAATTCCGCAATTACTCAGAAATATCACCAAGCTAGACATCTCTAGAAACTCCTTATCTGCACCATTGCCTTCAGATTTTCAAGCTCCGGAATTGGCAGCACTTGTCCTATTCTCCAACTACATTCCAGGCAGTGTTCCACTGTCCATATGTGATTTACAGATTTTTGGCTATCCTTGA
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| CDS seq | ATGGATGCCTCTGCTGCATCCATGCTCTGGACTCTGATCATCATCCTCGCCGCCGCAGCCGCTGCCTCCTCTGTCCATCCACCACAGCAGCAGAGCTATGGCGTCGGCTGCATCGCGGCGGAGCGGGCGGCATTGCTCTCCTTCAAAGAAGGTGTCATGGCCGACCCGCTGAGGCTCCTCGACTCATGGCAGGGTGCAGGAGACTGCTGTCGGTGGAACGGCGTCGGGTGCAGCAACAGGACCGGCCATGTCGTCAAGCTCGACCTCCGCAACACTCTCTACTGGGATGACCAGCGCCAAGTTAGACTGGACAACCCTCACGCCATGCGTGGACAGGTAAGCACCTCCCTGCTTGCCCTGAGGCGTTTGAAGTATCTTTATCTCAGCGGGAACAACCTTGGAGGACCGGGTATAGCCATACCATCGTTCTTGGGGTCTCTCGAGAGCCTGGTCTATCTCAACCTCTCCTGTATCGATTTCTTTGGAGAGGTGCCTACTCAGCTTGGCAATCTCTCCCGGCTGTCCTACCTCGACGTTGGCAGCATGTATTATTCTGGACAGATTTTCTCATCGGATCTCTCCTGGCTGGGACGCCTCTCTTCACTGAAGTATCTTGACATGAGCGGTGTCAATCTCAGCATGGTTTCTGACTGGGCTCATGTGGTCAATATGCTTCCCAATTTGAGAGTTCTCAATCTCGAACTGTGTCAACTCACGAGATCAAACCCACCACTTCTGCATTCCAACCTTACAGTTCTTGAGAAGCTCGTTCTTTCTTCCAACAACTTCTATGGACCACTTGCTACTAACTGGTTCTGGGGTATAACCACCCTTAGAACCCTCGAAGTGGAGTTCTGTTCCCTATATGGCCCTCTTCCTGATAGCTTGGGAAACATGACTGCACTTCAAGTTCTTGACATGCAAGATAATGATAATATCACAGGAATGTTTCCACCAACTCTGAAGAATCTATGCAATTTGCAAGAAGTCTTCACTGGGACTAACCTGAGCGGGGACATAACAGAACAGATGGAGAGGCTGCCAAAGTGTGCATGGGACAAATTGCAGGCATTAAATCTGGATGCAACCAACATGACAGGCAATCTTCCAGTTTGGTTGGTAAACTTGACCAACTTGAAGGACCTTAGTGTCTCAGGGAACCAGCTTAGTGGGCCTGTGCCTTTGGGGCTTGGAGCTCTTACTAAGTTGACTATATTGTATCTAGGCCACAATAACTTGACTGGTATCATATCAGAAGACTATCTTGCTAATCTTTGCAATATGGTTATATTGGACTTGAGCTACACTTCTTTAGAGGTTGTTGTGGGTTCCACATGGACTCCTCCATTCAAGTTAATCAGAGCACAACTGGCTTCATGTCAACTGGGTCCGGGATTTCCTATCTTGTTTAAACACCAAAAGGGCATTATCTACATTGATGTTTCAAATGCAGGCATAGCCGATGCAATCCCAAGTTGGTTTTGGGATGAAATTTCCTATGCATTTTATGTGGATATGTCTCACAATCAAATTGATGGAGAATTACCAGCCAAACTTGAAGCGAGGACAAGGCAAGAATTGCACCTCAATTCAAACCAGCTAAAGGGCTCAATTCCGCAATTACTCAGAAATATCACCAAGCTAGACATCTCTAGAAACTCCTTATCTGCACCATTGCCTTCAGATTTTCAAGCTCCGGAATTGGCAGCACTTGTCCTATTCTCCAACTACATTCCAGGCAGTGTTCCACTGTCCATATGTGATTTACAGATTTTTGGCTATCCTTGA
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| Protein seq | MDASAASMLWTLIIILAAAAAASSVHPPQQQSYGVGCIAAERAALLSFKEGVMADPLRLLDSWQGAGDCCRWNGVGCSNRTGHVVKLDLRNTLYWDDQRQVRLDNPHAMRGQVSTSLLALRRLKYLYLSGNNLGGPGIAIPSFLGSLESLVYLNLSCIDFFGEVPTQLGNLSRLSYLDVGSMYYSGQIFSSDLSWLGRLSSLKYLDMSGVNLSMVSDWAHVVNMLPNLRVLNLELCQLTRSNPPLLHSNLTVLEKLVLSSNNFYGPLATNWFWGITTLRTLEVEFCSLYGPLPDSLGNMTALQVLDMQDNDNITGMFPPTLKNLCNLQEVFTGTNLSGDITEQMERLPKCAWDKLQALNLDATNMTGNLPVWLVNLTNLKDLSVSGNQLSGPVPLGLGALTKLTILYLGHNNLTGIISEDYLANLCNMVILDLSYTSLEVVVGSTWTPPFKLIRAQLASCQLGPGFPILFKHQKGIIYIDVSNAGIADAIPSWFWDEISYAFYVDMSHNQIDGELPAKLEARTRQELHLNSNQLKGSIPQLLRNITKLDISRNSLSAPLPSDFQAPELAALVLFSNYIPGSVPLSICDLQIFGYP |
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| Function | Receptor-like protein EIX2 [UniProtKB/Swiss-Prot:Q6JN46] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0604150 | OsNip_01t0604150-00 | Chr01 | 23787960 | 23789747 | + | RAP2018-11-26 | ||
| CDS seq | ATGGATGCCTCTGCTGCATCCATGCTCTGGACTCTGATCATCATCCTCGCCGCCGCAGCCGCTGCCTCCTCTGTCCATCCACCACAGCAGCAGAGCTATGGCGTCGGCTGCATCGCGGCGGAGCGGGCGGCATTGCTCTCCTTCAAAGAAGGTGTCATGGCCGACCCGCTGAGGCTCCTCGACTCATGGCAGGGTGCAGGAGACTGCTGTCGGTGGAACGGCGTCGGGTGCAGCAACAGGACCGGCCATGTCGTCAAGCTCGACCTCCGCAACACTCTCTACTGGGATGACCAGCGCCAAGTTAGACTGGACAACCCTCACGCCATGCGTGGACAGGTAAGCACCTCCCTGCTTGCCCTGAGGCGTTTGAAGTATCTTTATCTCAGCGGGAACAACCTTGGAGGACCGGGTATAGCCATACCATCGTTCTTGGGGTCTCTCGAGAGCCTGGTCTATCTCAACCTCTCCTGTATCGATTTCTTTGGAGAGGTGCCTACTCAGCTTGGCAATCTCTCCCGGCTGTCCTACCTCGACGTTGGCAGCATGTATTATTCTGGACAGATTTTCTCATCGGATCTCTCCTGGCTGGGACGCCTCTCTTCACTGAAGTATCTTGACATGAGCGGTGTCAATCTCAGCATGGTTTCTGACTGGGCTCATGTGGTCAATATGCTTCCCAATTTGAGAGTTCTCAATCTCGAACTGTGTCAACTCACGAGATCAAACCCACCACTTCTGCATTCCAACCTTACAGTTCTTGAGAAGCTCGTTCTTTCTTCCAACAACTTCTATGGACCACTTGCTACTAACTGGTTCTGGGGTATAACCACCCTTAGAACCCTCGAAGTGGAGTTCTGTTCCCTATATGGCCCTCTTCCTGATAGCTTGGGAAACATGACTGCACTTCAAGTTCTTGACATGCAAGATAATGATAATATCACAGGAATGTTTCCACCAACTCTGAAGAATCTATGCAATTTGCAAGAAGTCTTCACTGGGACTAACCTGAGCGGGGACATAACAGAACAGATGGAGAGGCTGCCAAAGTGTGCATGGGACAAATTGCAGGCATTAAATCTGGATGCAACCAACATGACAGGCAATCTTCCAGTTTGGTTGGTAAACTTGACCAACTTGAAGGACCTTAGTGTCTCAGGGAACCAGCTTAGTGGGCCTGTGCCTTTGGGGCTTGGAGCTCTTACTAAGTTGACTATATTGTATCTAGGCCACAATAACTTGACTGGTATCATATCAGAAGACTATCTTGCTAATCTTTGCAATATGGTTATATTGGACTTGAGCTACACTTCTTTAGAGGTTGTTGTGGGTTCCACATGGACTCCTCCATTCAAGTTAATCAGAGCACAACTGGCTTCATGTCAACTGGGTCCGGGATTTCCTATCTTGTTTAAACACCAAAAGGGCATTATCTACATTGATGTTTCAAATGCAGGCATAGCCGATGCAATCCCAAGTTGGTTTTGGGATGAAATTTCCTATGCATTTTATGTGGATATGTCTCACAATCAAATTGATGGAGAATTACCAGCCAAACTTGAAGCGAGGACAAGGCAAGAATTGCACCTCAATTCAAACCAGCTAAAGGGCTCAATTCCGCAATTACTCAGAAATATCACCAAGCTAGACATCTCTAGAAACTCCTTATCTGCACCATTGCCTTCAGATTTTCAAGCTCCGGAATTGGCAGCACTTGTCCTATTCTCCAACTACATTCCAGGCAGTGTTCCACTGTCCATATGTGATTTACAGATTTTTGGCTATCCTTGA
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| Protein seq | MDASAASMLWTLIIILAAAAAASSVHPPQQQSYGVGCIAAERAALLSFKEGVMADPLRLLDSWQGAGDCCRWNGVGCSNRTGHVVKLDLRNTLYWDDQRQVRLDNPHAMRGQVSTSLLALRRLKYLYLSGNNLGGPGIAIPSFLGSLESLVYLNLSCIDFFGEVPTQLGNLSRLSYLDVGSMYYSGQIFSSDLSWLGRLSSLKYLDMSGVNLSMVSDWAHVVNMLPNLRVLNLELCQLTRSNPPLLHSNLTVLEKLVLSSNNFYGPLATNWFWGITTLRTLEVEFCSLYGPLPDSLGNMTALQVLDMQDNDNITGMFPPTLKNLCNLQEVFTGTNLSGDITEQMERLPKCAWDKLQALNLDATNMTGNLPVWLVNLTNLKDLSVSGNQLSGPVPLGLGALTKLTILYLGHNNLTGIISEDYLANLCNMVILDLSYTSLEVVVGSTWTPPFKLIRAQLASCQLGPGFPILFKHQKGIIYIDVSNAGIADAIPSWFWDEISYAFYVDMSHNQIDGELPAKLEARTRQELHLNSNQLKGSIPQLLRNITKLDISRNSLSAPLPSDFQAPELAALVLFSNYIPGSVPLSICDLQIFGYP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g41960 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0604150 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0024280 | SBH | 0.000000 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0024020 | RBH | 0.130820 | 0.000000 | 0.097566 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0024340 | RBH | 0.000000 | 0.000000 | 0.391598 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0023730 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0023450 | RBH | 0.0 | 0.0 | 0.772678 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0397600 | SBH | 0.2911085 | 2.632865 | 0.4291925 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0387100 | RBH | 0.011367 | 0.0056345 | 0.0633975 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0023390 | RBH | 0.019289 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0023340 | SBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0023620 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0023610 | SBH | 0.082126 | 0.215587 | 0.227766 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0023520 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G023570 | SBH | 0.038315 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0023280 | SBH | 0.000000 | 0.449103 | 0.089174 |
