Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0533800 | OGI:01061920 | 1/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:19317853-19325937 | ||||||||
| Gene Symbol | GSL9, OsGSL9 | ||||||||||
| DNA seq | ACCAAAAGTGTTCGTTCAAATCGTCATAGTTTCTCCAAGTAGAGTGGCCAGCTGTACCACCTTTACTCTTATGTGCTTCCTTTTTTTGGTTAAAATAAGAATAACAGTTTGTAAGCACAAGAGCTTCTCCTGCAAGGAAAAATTAAGTTATTTATCAAACTTTAAATACTCACTTTCTGCAAAACCTTGTAGATAGGTTCAATGGCAGTTTTCAGAAATGATCCCTCTTCTTCAAATCCTGGTGGTGATTGAAAATTATTTTCTTCGATCATTTTGTGCAACTGTCTTGCCATCTGCCAAATTATCAGAAAGTAACAGTCAAAACTTATATACAGGAGAAATAAGAAAACCATAAAATAGATATTGCAACTTATGTGATGGTTCATGATGAAAGATGGTTTGAATGGATGTTGTAGCTGGTTGGATATTATTACTAATTCACCTTGACAGCTTGATAACACATTCATGGCTTCAATTCAATCACCTCACAAATTCATTATTAAGGTATGCTTACAGTTGAACCTTGATGTAGGCAAGGATTGCATCACATGGAATAACTCCCATAGTCATATTATCATTTCCAGTAGCCATGCAATGGACACAAGATCTACAATGCTAGCAGTAATATTGAGCTATTTCCATTTGCTTGGACTGAATTTGTTCAGACCATAAAGTCCAAAATAATTTGTGTTGAGCCCATACGGCATCGAAATCTAGAAGAAGATAAAATCGAACACTCTTGCTAGCATGCCTCAGATATTTCAGCAGAAATTTTTTTCGTTGTGTAAAATGGCATATTTGTGATTTATAAAGAAGCAAATGTTTAAGGAGCACCAACCCCACATTAACCAAAAGTACATGAGACTGTTAAAATAATTCATAGAATAAACAAGCCAGGGTCAGTTCTTGAATTTCTGAAAGCGTGAACTGGCATATAATTTAATGATTTGTTGAAAAAGATAGCAACGAAACATTATATATGTAAATTAAATAAATCAACCATGATTAACAAGTTATTCAAACTGGAATACAAAAATAAATGAAAATTTAGATTGGAAAACCCTTTTGTTCCAACAGATACTTACATGGTGGAATATGTCTAGATCAACCATGATCAAGAAGTTATTTAACTAGAAGCCCTTACAGAAGTAAATGAAATCGAGCATGGAAAACCCTTCCATTCAAGCCGATACTTACATGGTGAAATATGTAGCACAGGCACTCAGGCATAAAACGAACATTCGAGGCCTCACCCCAGATAAGAAGATACAACCCAATGTGAAGGAGCATTAATTGTTGTTTATTTTGTGTGACTGTCTCAACGTTCCTGATTCCAGAAAACAGAATAATGGTATTTGAAGACATTAAATATTGAAGGATATTGAGAAGAGAAATAAGCAAAATCTTCATAAACTGTTGAACGTACATGATACTTGAACTAACATGCAAATAGCTACACCATGATTGGTAGTTCTGAAGTATCTTTTTCCATAATTTATTCACAGTGTCAACCTGAAAGTTAACATGCCAGCATACTGTTAGATTTCCTTTTTAATGTGAATACCAAAATTGGTAGCTCGCTAAAGAAAAGCACATAATAAACTTAAAGCATGAAAGCATATATCTTTTAAATGAAACAGAAAGAGCATTCATCTTACCAGAGGATGGTCTTGCCCAGCAGTCCTTGTGCCAATATTTGCGAGCAGCAAAACCAAGTTTTCTCTTTGATTTTCCACATTTGATTTCTATAGTGAGAATAATTAAGTTCAAATGTCACAATGTTTAAATACGGTTGTCAAACATAATAACATGCACATAAATAAAACTGACATGTGGCAGAAAATAACATTGTATCACTTCCATTTGGAACCAGCGGACCATATACATAGACGTTAAAAATTTTACCTGAAATCCAAATGCTAGTGAAAGCCAGTCAAGTAAATCTCGTATGGATTTATTCCCATCCGTGTGCATAGTAGACATGTGTGGCATTGGAAGGCCATCGATGCTATTTAGCGCATCAATAGCACCTTTTATCTATATCATTTACATCAAGAATACCATCATTAATAAAAGGTTTTATATACAGGTAGAAATAGTGTGAGCAAGGAGTCAAACATAGGTGTGAAGAATTATAACTAACCTCATGGAGTTCCACAATTGCCTCAGATGAACCTGGAAAGTTCAGGGGAATAATGTTGTACTTGTAGTTCTTGAAATGAACACTCTTCTCCTCAATCACTTTCGCAATCTTCATCACCTATAACACAAAGTTTGGAAGGTTGTAGAGAAGAATATTACCAGTAACAAGTGAAGCACAGGGCCTTAAGCAACAATATGCAAGAAGTACCTCAGAATCAACTTTGTTGTTTGTCACATCTCTTAACACTTCATAAAGAGCAGATGCCACTTGGTAACGTCTAGCCACTTCCTCACTGAGCATTCAACATCACAAAAGGTGGTTAAAACAGATCATCAATAAGGAAACAGCTAATCAGTGCATTGATACTTACAAGTTTCTCTTTTCTGATATCCTACTCAGCTCAGCACAATAACTCTTATAAAATCGTTGAATTTCCTTTGCATCATTGCCCATAACTTGGGTGTCGTCCTGTTAAACAGAGAGTAAACTCAAGGGTTCATCACTGGAGAAAATATTATGAGAAAGAAAACACTTTTAAAATGGAACATAAAGATAATTTTAATCAAAGTAAAGGTAATATTGCAAACATAATCACAACAGGATCATTTTAGAGTTCCATGCCAAGGATGATACACAGTCATGACTCATGAATGATTGCCAGAGCCGTTATTGGCTATGTAAATATAGGACTCTATATGTTTGACTGCTTCAAATGCCAGCTGAAAAGAATATTTTTCCCTAATATCAAGATAAATGAAGTAATGAAAGAACGTATTTGGCCTCATGGGTCACGGCAATATATTAAGCAGCCATTTGAAAGAGAATAAGGTTTTAATGCCCCTGGAGGGCACCTGCTCCCATTTGTAAGGTTGTAAATGACTAGCAAGATTATCTACATCGTAATTGTTCTTTATAGAAGACTTATCTAATATCTGATTCCGAAGAGTAAGAAAACAAGAGTTAATAGACAGTGTATTTACATATTAACCAGAACAAGGGTAAGTTCAGTACCAGAAAATATGCACTAAGGCTGTTTCAACAGAAACTCAAAGAGAAAGATGCAGATTTTATCTACACTGAGGGAGGGTACCTGCAACATTACAATTTCAGACATACCTGATCTAGCTTAACTGACATGTATGTTTTGAACTGTCGAACTCCACGTTGGACTGATGATGGATCCATTCTTTGGACTTTGTTGTACGCATATCGGCGACCTTGATACAAAAATGCATGTAGGAACAAAACTCATATCAGAAAGACCTGTACATCACAATACATGAAAGAAGGAACCAAATAGCTGATAAGATAAACAAACACGGAAGCAACCACCTAGTACCAAATCGGTTCATGAATCATGATGCACTATGGCATGCAGTGAACAAATTTCTAGTTAGCATTTGTATCAACAAAATGAATTCATGATTACTTTTATAAAACTGTCGTGTGTATTGCACGGTATACCCAACTACTAGCTGTCCCAAGTAAATTTACACATAAAAGTGCAGTATTTGTTGAGAGTTCAGCTTCTCATGACTTCATCTAAGCTTTGATGGAAGTGAAGGATTAAACCATCTGCTCTCTGAAAAAAAAAACTACTCAAATCCAGCATAAATGTGCCTTTGCACTCTTGTACACTGAAAAGCGAGAACTCCTATCCTGTCCCGTTATAAAGTAGGCTATCAAACCCTGGTATGCATATGAGTTACTCAGGCCATAATTAGTCACACAATCACCAGAGGTGCATGTCAACATGAATGTCTGCTGTACACAACAAGCATGGGTAAACGTTCCAACGAAATATGAATATCGAGATCGCAATGTAGGCCAAACAGTACAAAGTTTAGCTGTATAATTTTCAGGACCTCCCGCTAATAATCTGTCAAGGTGTGAAACAAACAACCCAACCCAGCCAACTCAATAGTATGCACTATGCAGCATGGAAATGGTTTGCGCTTGCGCCCATCATATTCGACACATGAAGCGGAAACGCAAGTTACTTCAAATTAATGTGGAATAGGCATGAATGAATTAGTCAATTCAAGTCAGCATTATCAGCTTAAACAGACGTCATTTGAAGCCGGGGTTTCGGCGACCTTAGCCACAAAGGGATTCATCACAATGTGTGTGTGAGGGGTGAGCGCTTACAGAGGAAGGCGACGCGCGGGCTATCCTGCTCGACCTTGTCGGCGGCGCGGATGAAGGGCATGACCCCCGGCGCGACGGCGTCGGGCACCCTCTCCCCGGCGTCCGCCACGCCCTCGGGCAGCCTCCGCGACCCCAGCGTGTGCGCCAGCGCATCCCGCCTCCACCTCCCCGCCCCCGCCCCCGCACCCGCACCCGCCGGCACTACCACCTCCGTGGACGTCGACGCCGCCATCGCCGTCTCCCCCCGAATCGTGGTGGTGTGAGCAGCAAGGGCTCGGTCGGCGCCGCTTTATACGCCATGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGGCGGCGCGCGGCGGGAAGGGAAGGGGAAGGGAGGAGCGCTTGCGGAGGCGGGCGGTATTCCTTTCCCCTACTCGAGAGTCGGTCGAGCCCCCCGGCGAGGAGGAAGCAAGGAATCGAGCTCGCCGCCTCTCTCTCTCTCTCTCTCTTTCTCTTTCTCTTTCTCACTCCGAGTTTCGGCCGTTGGAGGTGCGGTGCTTTGCTTTCTCGGGAGTACTATAGCTTTGGATGATTAGCCACATGTAAAACTGAAATGTAATTAACATATAATTATTAATTATTAAGAGGTTTAAAATATATTTGTTTTTTTTCAAATTAACTGCTATCTCCGTTCCAAAATAATTATAATTCTAAATTGTAGAGCATATATTAAGATATTAAGATTTGAGAAGAAAGATTAGAATTGTGTAAATATATATAGGTAAGAATGAAAGATTGGTTGAGAGTAGAATATGAGGAAATTTGAATGAGAAATGATTAATGAGATAATTAAGCAAATATTTTATAATAAATTAAAATTTTATAATATAATTATTATGGGACGGAAGTGGTTCTAAAATGATTGTTTTTATACTAAACGTATTATTATTCAGCTGTTCAATAAACGAGACGTCAGACGTGCACTGATCAGTTTCTCTTGCGCCGCCCGTTAGTTTTCCCAACGGCTCTGCACTCTTGCGGGTGGATGGTGCGTGCCACTGGGCTTGGCTGGGCTGGAAAGCTGACGCGCCACCGCCACGGTGGACTGGAATCGTATACTTTGGGCGTTTTCGAGCAATCTCCGAGCGATCAAAAGATCTGACACGTCCCGTGGTCCAATGTAATCCGATTGCAGAGGTAGTAGAAGTACCTACTTTTTCAGTTCAAATTTAAAAAAGAAAAGAGAAGGGCTTTTTTTTTTCAGTTCGGTACTTTGGCAAAATATTACTCCCTACATCTATCCTACATCTACATATAGTCATATTTCATCTTGGCACACAGACCAAGGATAAGTAACTCTACTTATCATTTATTTAAACATGCTACTAGTTATTCCTCGTAAACAAGTAATTTATTAATATTTATATTTCTCGATGCCTATGTAGCCAATCTTGTGTGAAAGAATTGAGAGTCACGAATTAAATCCGAGAAAATCATTAAGAGGATAGGTTGTTGGATTAAAATATGCCTATCAAAAATATTTTTTTCAGATTTAAAATATGACTACCAAAAATAGATGGAGGAGTATTGTACTCACTTAGCTTTGCCCGATGCTTAGCTTTGCCATGTCCATCATGAGTGTTGCGTTCTTTATAGTTTGTACAAAAAGCGTTTGGTTGAATAATAGACCTAGATTGCAAAGGTGGAGCAATTCAAAATTCGTACAAGAACATCTGGCTCTTTTAGCCCAGAAAAAGGTACACGATTCAGCCCACCGTCACCTGTTATAAAATATGGTTAATTGGATCATCCTATTATAAATTTACCCGTTTTAAAATATATCATTACTATTTGCGAAATTGGAACCATGCCATTAAAATTTCACATATACTTCAGATATACCACTACTTACCTATTCACTGCATTTTTCATATTTTTAGGACCAAATTATCCATTCTCCATCCATCCCCTTCTTCCTTCCCCCTCTCTCCTCTCTTCTAGCCGATGAGCTCACATAGTGGAAGGGTTGCAACAAGCCACCGTCACCGGGGGAGCTAGAAGAGAGTGGCGGTTGCAGTGTCCATGAGCTACAGGCGACCACAATGTTAGAGCCTGTGTCGAGGGCGAGGACTGCAGCCAGCGCTAATCTCCCTGTGCACCGCCGCTTCTTGGCTTGTTGCTCCAGCGACGCTGAGTCACGTGGGTGAGTAAGCTCTAGGTGTGAGATCTCGGCAGCGGCAAGGTCAAGCCATCGGATCTAGAGGCACCACCGGTCCTCTCCAGCTCCACCAGTGGTGCCCCTGCAACAGCTCTTCCAGCACTATAGCTGCTTGCTCCACAAGCCTGTTGTGGAGTGAAGGCATGCCCCATAGGGGCAACGATCGGCCGCAGCTAGAGGTGAGAGGTTAGACAGAGAGGAAAGGAAGAAGTTGATGGAGGAAGAAGACAAGGGTATTTTGGTCAAAAAAAATTTAGAAATTGCATCAAAGAGGTGATTAGTTGCATATCTCAAACATCTGTTAAATTATAATGGTAGTTTCGATTTTGCGAATTGTAGTGGCATATTTCCAAATGTGCTAATTTATAATGGCATGGATCCAATTAGGAATAAGTTCACCGGAGGTCCCTTAACTTAACAGCGAGATTTTTTAGGTTCCTTAACCATAAAACCAGAAATATGTACCCCTAAACTCACGCAAACCGTGCACTCAAGGTCCTATGCCAGTATATATGGGTGGTTTTGCTGACGTGGCATCCTAGTCAGAAAAAAATTAAAAAAAGTATGTGGGGCCCACATGTCAGTTGCACATCTTTTTTTCTTCTTCTCCTTCTCTTCTCTTTTCTCTCCTCTTCTTCAGTGAGAGAGGTCGGCGGCTGGCGAGCGGCGGGAGAGTGCGGCGATGGGCCCGCGCGGAAGCAGAGCGGCACCGGGCTGCGAGCGAAGCGGAGGCGGGCGAGCGCGGCGGAGGAGTCGGGAGAGGCAAAGCAAGGCCGAAGATGGGATGCGAGACCGGAGGAGGGAGAGAGAGAGAGAGGAGGCCGACCGGCGCTGGTGCCAGCTTCATCGCCCGACAGCGTGACGACGATCCTGGCCAGGTTGAGGTGCTGGTAGCGGTAGAGCACGACGCACCTCATGTCCTCCCTATCGCGCTCGTACACCTCTCGCGCCTTCTCCGCCAGCGCGCCTGCCGCCACCGCCTTCGTCTCTGCGAGCTCGAGCTTGGCCTTCACGCTCCAAAGCTCCTCCCGCAACGCGCCAGCGTCACACTCCCGTGCCCTCATGTAGTAGGTTGAGGCGATGACGTCGCCTGGGTTGGTGATGGTGAGCTCGCTCTCCTGCGATGGCATCACGATGCCTGCACAGCTGCCTCGCGACCTTCCACTCGCCTTCCGCTGCTGCGGTGCTATCTGGAAGCAAACCACTAGCCCGCTACACTCCACCCGCTGTCTGAGGCCGTGCTCGCCTTCCGCCCGCTGCCTTGCCGCCACGCTCGCCCGTCGCCGCTCTGCTGCTGCCCCCTACCTGCTTCGCCTTCCGCTCGCTTCCGATGAAAGGGAGGAGCACGACGAGGACAGGGTTGCTCTGCCCGCCGCCGTGCTCAGCCGCCGCCGCTCCGCCCGCCGCCGCGAAGTGGTAGGCAATGTGGGTGGCAGCAACGCGCGAGTCGGCGGGGGGCACGACGTCGAACTCGTCCGCCACGCTCGCCCGCCCGCTCCGCTCGCCGCCTGGTGCCGCTCCACCCCCCACCGCCGCGCGGACCTTGCCGCCGCGCTCACCCGCCGCCCGCCCATCGTCGCTCCGCCCACCGGCCGCCG
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| CDS seq | ATGGGCGGGCGGCGGGTGAGCGCGGCGGCAAGGTCCGCGCGGCGGTGGGGGGTGGAGCGGCACCAGGCGGCGAGCGGAGCGGGCGGGCGAGCGTGGCGGACGAGTTCGACGTCGTGCCCCCCGCCGACTCGCGCGCGGGATGCGCTGGCGCACACGCTGGGGTCGCGGAGGCTGCCCGAGGGCGTGGCGGACGCCGGGGAGAGGGTGCCCGACGCCGTCGCGCCGGGGGTCATGCCCTTCATCCGCGCCGCCGACAAGGTCGAGCAGGATAGCCCGCGCGTCGCCTTCCTCTGTAAGCGCTCACCCCTCACACACACATTAATGGATCCATCATCAGTCCAACGTGGAGTTCGACAGTTCAAAACATACATGTCAGTTAAGCTAGATCAGGTATGTCTGAAATTGACGACACCCAAGTTATGGGCAATGATGCAAAGGAAATTCAACGATTTTATAAGAGTTATTGTGCTGAGCTGA
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| Protein seq | MGGRRVSAAARSARRWGVERHQAASGAGGRAWRTSSTSCPPPTRARDALAHTLGSRRLPEGVADAGERVPDAVAPGVMPFIRAADKVEQDSPRVAFLCKRSPLTHTLMDPSSVQRGVRQFKTYMSVKLDQVCLKLTTPKLWAMMQRKFNDFIRVIVLS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0533800 | OsNip_01t0533800-00 | Chr01 | 19317853 | 19325937 | - | RAP2018-11-26 | ||
| CDS seq | ATGGGCGGGCGGCGGGTGAGCGCGGCGGCAAGGTCCGCGCGGCGGTGGGGGGTGGAGCGGCACCAGGCGGCGAGCGGAGCGGGCGGGCGAGCGTGGCGGACGAGTTCGACGTCGTGCCCCCCGCCGACTCGCGCGCGGGATGCGCTGGCGCACACGCTGGGGTCGCGGAGGCTGCCCGAGGGCGTGGCGGACGCCGGGGAGAGGGTGCCCGACGCCGTCGCGCCGGGGGTCATGCCCTTCATCCGCGCCGCCGACAAGGTCGAGCAGGATAGCCCGCGCGTCGCCTTCCTCTGTAAGCGCTCACCCCTCACACACACATTAATGGATCCATCATCAGTCCAACGTGGAGTTCGACAGTTCAAAACATACATGTCAGTTAAGCTAGATCAGGTATGTCTGAAATTGACGACACCCAAGTTATGGGCAATGATGCAAAGGAAATTCAACGATTTTATAAGAGTTATTGTGCTGAGCTGA
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| Protein seq | MGGRRVSAAARSARRWGVERHQAASGAGGRAWRTSSTSCPPPTRARDALAHTLGSRRLPEGVADAGERVPDAVAPGVMPFIRAADKVEQDSPRVAFLCKRSPLTHTLMDPSSVQRGVRQFKTYMSVKLDQVCLKLTTPKLWAMMQRKFNDFIRVIVLS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.166916 | 0.693023 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0533100 | RBH | 0.276951 | 0.0 | 1.207794 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g34900 | SBH | 0.230828 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0533800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0020250 | SBH | 0.225928 | 7.537503 | 3.229941 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0019880 | SBH | 0.000000 | 0.127133 | 0.702575 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0020200 | SBH | 0.536364 | 3.119371 | 3.511723 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0019590 | SBH | 0.180187 | 0.073207 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0019490 | SBH | 3.096225 | 6.125003 | 5.538730 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0329000 | SBH | 2.241079 | 4.784138 | 5.1689765 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0019550 | SBH | 0.350217 | 0.352798 | 0.592005 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0327500 | SBH | 3.8428845 | 8.1098405 | 17.5291255 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0019560 | SBH | 0.111857 | 0.406402 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0019470 | SBH | 0.182476 | 4.770559 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0019740 | SBH | 2.401465 | 6.610933 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0019490 | SBH | 0.255191 | 0.625828 | 0.263981 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0019390 | SBH | 0.143992 | 3.225390 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G019900 | SBH | 0.198242 | 0.796930 | 0.945786 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0019610 | SBH | 1.168854 | 4.913891 | 1.233104 |
