Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g34900 | OGI:01061840 | 6/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:19281427-19282266 | ||||||||
| Gene Symbol | GSL9, OsGSL9 | ||||||||||
| DNA seq | TCATTGATAGATAGGTGGAGGAATAGCAGGAAAAGCAGATACCTTCTCCAGCCTATGCAAGAGGTATGTTTTGAATTGCCGAACTCCTCGTCCACCTGAGTTTGGATCCATGGTGTGAGCCTTCTCGAACGCGGTAAACCGACCTTTTAGCAAGCACCAAGCCACCAACCAAAAACCACAGTCAAGTCATCACAATAGGCTAAGTTCAAAGCAGAGGTATACAAGGGAGATAAACATGCACATTTCTTACATAAACAGAAAAAAAAATAAAAATAATTCTGCAATCGATACTATAGCTGCGAAATGAGATTCTTCCAATTTCCAAGGCTCACTGGCTCAGAACATTCATGATGGCACTAGACTACCTAAATGGTGTGGTCGGCTGCGTCCGTGCATGTAATACGGAGCAATTCATTAGAGTATGATTAATTAAGCATCAACTAAAATAAATTTGAAAAATGAATTAATATGAATTTTAAGCAAATTTTCTATAGATTTTTTTAATTAAAAAAACACCAATATGTGTCAACGAGCGAGCATAGCTGCGCATGCAGGCAACAGATAGCGAAATCATAGGAGAGAAGTAAAAAAAAAAAAGGGAAAGGGGAACGCAGAGCACGCACAGAGGTAGGCGACGCGCTGGTTCTCCTCCTCGATCTCGTTGGCGGCGCGGAGGATGGGGACGATGGGGGCGAGCGAGTTAGGCACCAGCTCGCTCTCCTCGCTGTACTCCCCGCCGTCCTCCCCGGAGTACCCCTCCGGCCTCATGGTGAACGCCCTCGACAAGCCCCGCCGCAGCGACGGCTGCGGCCCCGACAACCCCCCTCCCCCCGTCGCCAT
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| CDS seq | ATGGCGACGGGGGGAGGGGGGTTGTCGGGGCCGCAGCCGTCGCTGCGGCGGGGCTTGTCGAGGGCGTTCACCATGAGGCCGGAGGGGTACTCCGGGGAGGACGGCGGGGAGTACAGCGAGGAGAGCGAGCTGGTGCCTAACTCGCTCGCCCCCATCGTCCCCATCCTCCGCGCCGCCAACGAGATCGAGGAGGAGAACCAGCGCGTCGCCTACCTCTGTCGGTTTACCGCGTTCGAGAAGGCTCACACCATGGATCCAAACTCAGGTGGACGAGGAGTTCGGCAATTCAAAACATACCTCTTGCATAGGCTGGAGAAGGTATCTGCTTTTCCTGCTATTCCTCCACCTATCTATCAATGA |
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| Protein seq | MATGGGGLSGPQPSLRRGLSRAFTMRPEGYSGEDGGEYSEESELVPNSLAPIVPILRAANEIEEENQRVAYLCRFTAFEKAHTMDPNSGGRGVRQFKTYLLHRLEKVSAFPAIPPPIYQ |
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| Function | Putative callose synthase 6 [UniProtKB/Swiss-Prot:Q9LYS6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g34900 | LOC_Os01g34900.1 | Chr01 | 19281427 | 19282266 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGACGGGGGGAGGGGGGTTGTCGGGGCCGCAGCCGTCGCTGCGGCGGGGCTTGTCGAGGGCGTTCACCATGAGGCCGGAGGGGTACTCCGGGGAGGACGGCGGGGAGTACAGCGAGGAGAGCGAGCTGGTGCCTAACTCGCTCGCCCCCATCGTCCCCATCCTCCGCGCCGCCAACGAGATCGAGGAGGAGAACCAGCGCGTCGCCTACCTCTGTCGGTTTACCGCGTTCGAGAAGGCTCACACCATGGATCCAAACTCAGGTGGACGAGGAGTTCGGCAATTCAAAACATACCTCTTGCATAGGCTGGAGAAGGTATCTGCTTTTCCTGCTATTCCTCCACCTATCTATCAATGA
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| Protein seq | MATGGGGLSGPQPSLRRGLSRAFTMRPEGYSGEDGGEYSEESELVPNSLAPIVPILRAANEIEEENQRVAYLCRFTAFEKAHTMDPNSGGRGVRQFKTYLLHRLEKVSAFPAIPPPIYQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.230828 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0533100 | RBH | 0.276951 | 0.0 | 1.207794 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0533100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0020210 | RBH | 0.098734 | 4.081545 | 1.152183 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0019840 | RBH | 0.000000 | 3.622456 | 0.364054 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0020160 | SBH | 0.179698 | 12.990232 | 3.866337 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0019550 | RBH | 0.0 | 0.130892 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0019450 | SBH | 0.314304 | 7.345913 | 7.205016 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0328700 | SBH | 2.3260365 | 17.095177 | 11.200852 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0019510 | SBH | 0.009122 | 0.396789 | 0.233798 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0327000 | SBH | 2.427579 | 23.327339 | 14.719633 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0019520 | RBH | 0.058064 | 0.131427 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0019430 | SBH | 0.000000 | 4.415827 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0019700 | RBH | 0.0 | 12.198498 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0019450 | SBH | 0.107724 | 1.662089 | 0.244480 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0019390 | SBH | 0.143992 | 3.225390 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G019860 | SBH | 0.000000 | 1.643886 | 2.981054 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0019570 | SBH | 0.000000 | 5.507739 | 0.963298 |
