Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0531400 | OGI:01061480 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:19129984-19134027 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AATTTCTAATATATTGAAGGGATGATATTTGAACATTACAAGCTCTTGGCACACTAACCACCACCACCACACACTTCCCACAATGGCATGTTACTTTCTGAATCACAAAAGAAAGCAACAGAAACAGCCATACATAGCTTCAGGTAGCCTTAGCCTAAGCTCACAATCTCACATTACTCAACCTCATAGAAACTTCAAGCTTACTACCAAAACTAGTGGCCTCCTCATACTTACAGAAGAGGTTTATATATCTTTCGACCACAATCACTAAGAGATTCAGAACAACATCAGACTGACAATGCTAACAATGCCAAGCAGCAGCCCAATACTTGCCTTCAACCCAGCAGCTCCATTCAAGCCCCAGACGCGCACATCATCGATCACTGGCCCACAGAGCGAGCTGTGGTCGTCGCTTCTCGTGTTGTAATACACGCTGTAGAACGCCACTCGCGTCCTCTCAGCTCGTGCTGTGAATGTCACATTCGCAGCCTGGCTTGTGGCATTACCCATGGGCGAGTAGTGGAAGTTCTGGGCCTGGTCACCTGCGAATGCCATGACAGCCATTGGTGGCTGGCATGAATCCCCTGCTGAGCCCAATGTGAATGTCAGGCTGTACTCTTTCTGAGGGGTTGTCTCGACCATCTGTGAGATGATGCCTTCCTTCCCTGATAGAAGCTCAATGGCGCGCTTCCCTTGGGGAATGGTGTACTGGTCAGAGTCGACAAAGCGGACAGCTCGATTTGACTCAATCATCCAGCCAGGCAAGGCAGACGTCTGCTCATCGAGGTTGGTTGGGAGAAGCACCCCAAAGCTCGTGTTTGGAAACATCCATGGACCCTCCTCAAAGTCTCCATTCGACACCACATTATCTGTTGAAAGAAGACAACACCAAGTGATGACTTACGAACCATACACATGAGAAATGAACTAGAGCACCTCTAGCTCTCTTAAGACATCCTGTAAGGATATACACTCTACTAGGTATAGAGATAAGCAGAACTGTCATACCCTTTGGTTTGTCTGGAGTGAAGAGCTTCTTTATGGCAACGTTGTCAAGGATAGGCCCACAAGTCGGATCATCCTCCATACCAGGGTTCCTGAACTCAAGGCTCGCCTGCTCATCTGTTGCCTGAAAAGCCAGTGCATATGCATCCCAGCCTTCTATGTTGTACAATGTCTGCAGGTCCACTGTCTGTGATGCACCACCGAGCACAGACACATTGAGTGACTCTAGCTGTGCACACGTTCAGGCAGCACTGAACGTGATAGCATACTCTGAGCCCTTCTCAACCTGCACCACCTGCCCTATACTTGCATCGTTTCCAAGACGTACAGCATGATCCCCTGACATGAAAATCCAAATATTAAACACATCGAATACAAATCAATGGTGCAATTTGATTGATCAGAGGACAGAAGGAGAAAAGCTCTGTAGGATACCCTGTGGAACAATAAGAATCATGCCACCCTGGTGCTGGCCTGCTGAGATGAGCTCGACTGTCCCATTGATCGTCCAGCCAGGGATCGATGATGCACCCTCAGCAACTGAAGCAGATTTGACAAAACCACCAGCTGGTGCTGTCTCAAAGTCACCATTGCTGAGCAAGCCTGTTGTGCAAAGAGATCACTTGTTCATGTAAGTGCCAAGGTCAATTTAGTAACAGATCTCCGAAAGTAACACGGCTGCAATCCAAGATCAAGAGGCAGAAAATATGTTTCTCAAGAACTCTACTTAATATCTACCCATGTTATATGCGAAAGTGTTCCCATGCAAGTGAAGCCAAGTACATCTATGCAAGTCTGCAATGCAATAAAACCATAACTATTTTAAGTTGTGTAGCTCTAGCCTATTGTAGGATAGGACGAACCATAAATCTGATCCCCCACTGAACCTAGTACACTGTGCGCTGGACTATCTTTGTTATGGCATATATAAAATAATGTACAACTCAGACTGAGGGTGCGTTTAGTTCACGCCAAAATTGAAAGTTTGATTGAAATTGGAACGATGTGATGGAAAAGTTGGAAGTTTGAAGAAAAAGTTGGGAACTAAACCAGGCCTCAATTGAATGGCACTATACAACTCCAATCAAATGCATAACAGTGACAAAAAAAAACATTTCAGATAAAAACTTAAACCTTTCTAATCAAACATGTGTAACAAGTGAAATGAACCATCACAGTAGAGTTTGAGGAAGTTCATTTCCAAGACTGGTTTTTCTTATAAGTGACTTCCCAAGCTTGTTTTTTTATGGCTACCTTCCCAGTTGAAAGCATGGTTGCACAGATAAACTGTACCATAATTAAATCTCCTGTACAAAAAATTAACAGCTAAAACCTCTAATTCAGTACTATAGGAGAGAAAACATGTCCATGTTTTTCTATTGTACATCCAATGCATTTCATTGGGGCACTGCGGGTAGGCCACTTTACTGTGCTTCAATGTCCTTACAAGGACAGCCATGTGACTATGCACGACGATATTATGTGGTGAAAGTGAAACATCCACCAACCCTACCCTATCCACCATCCCACCATGGAGAGCCCCATGCAGTGGTCCAGACTCCAGAGCTGCCCATGTCCGGAGGAAATCACCACGGCCCGTAGCGTAATTCTGGGGAGGTTAAGGTACGAAAAATTAAAGAGACAGGCATGGACCCTCACGGCCATCCTTTTAATAAGCCATTTGACCTTTTTACTGGACGGTTCATTGAACACGTTTGCAGGACACTGGCTCACTGGTTTCTGCTGCTGTGCTGTTCGGCCTGGATCCAAGTTTACTACTACGCCACATTTCATTTTGACTTTCATGCAACTTCGTCCTTGCATAGAGGTTCATAGTACCTCCTTTGGACAAGATAGGAAACTGAAACTCTTTCAGTTACAAGCCTGAAGATTTTCTGAATCTTTCAAGTGGTTTTGTTAGCAGCATTCTGCACCCAACAGAATGTCTCTCTCATCATACAGGACAGCTCACTTGGGGGTTTTTAGTCATTTTCAAACATAAAATTGCATGATTCATAGAAAAGGAATAATTTTATAAAGATATATACATGCAGACTACTAAACTCGAAGGCAAGTAAGGAATAGGGGGGGGGGGGGTATTAAGCAGGTATAAATATTTTTATCCAATTAATGTACTTAAAAGAAGTGGTTAGTGGTTACACTGGTCACTGCAAAAAACTACAGTCGCAGGAAAGCTTTGGAACAAATTGCAGTATAACTGATCAGTTTTTGGCTGTCCAGACTTCAATAACAGGACAGGTTTGGATAATTGGTATGAATAAATGTTATCTCAACCTCCAAGGGCCAAGGCTCCTTCCTACTTTCTAGGACCTTTACTTTGCAGGTATACTGAACCATGCTCTACAAAAAGAGAAAAAAAAAAGAAGGGGGGGACTATCACACTCCTTCCTCACGAGTGCAACCACATCTCTTGATTCCTAGGGCACAAAGCTAACTTCTTGGCATGCTTTACCACACCATTTTCCTAGGGGATTATTTTTCTCTTCTCCTACCCACCCTTCAAATTTCTCCTCAGTGCTATGTATATGTGCTAATGAACTCCGCATTTGTTATACAAATGTGGGATGCGGAGAGGTACTAAATCGCATGATTTCTCTATTTGCTGAGATCTGTGATGCAGAAAACTACCCATCCCCACAAACTCCAGCCAAATATTCCACAAATATGTCAAAATACTGCCTTGGATCCTCCAGCATCAAAAGAACAGCAGCACTACTGATCCTCCAGCAAGGGCAAGAAACAGAAACGATCGAAGAGACAGCAAAGCATACCATCCTCCACCGCAGCGGCCGAGGCCAGATGGGAGGGCGCCAGCAGAAGCAGGCCCAGGCACAGCCCCAGCAATGCGAGCCTCCTCGCCGTATCTCCCTCCATCTCCTCCTCCTAGCCGCCTCGAGCTCTCGCCTCCTCCTTCCCCCCTCGCCGAGGAAGAAGAACAGTGGAGAGAGTGAGCCGAAGTACAGTGTGTGTGCAGCTGACCGAGTGAGCGAGCCGAGCCAGCCCTACTCACTGGGCTGG
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| CDS seq | ACGTGTGCACAGCTAGAGTCACTCAATGTGTCTGTGCTCGGTGGTGCATCACAGACAGTGGACCTGCAGACATTGTACAACATAGAAGGCTGGGATGCATATGCACTGGCTTTTCAGGCAACAGATGAGCAGGCGAGCCTTGAGTTCAGGAACCCTGGTATGGAGGATGATCCGACTTGTGGGCCTATCCTTGACAACGTTGCCATAAAGAAGCTCTTCACTCCAGACAAACCAAAGGATAATGTGGTGTCGAATGGAGACTTTGAGGAGGGTCCATGGATGTTTCCAAACACGAGCTTTGGGGTGCTTCTCCCAACCAACCTCGATGAGCAGACGTCTGCCTTGCCTGGCTGGATGATTGAGTCAAATCGAGCTGTCCGCTTTGTCGACTCTGACCAGTACACCATTCCCCAAGGGAAGCGCGCCATTGAGCTTCTATCAGGGAAGGAAGGCATCATCTCACAGATGGTCGAGACAACCCCTCAGAAAGAGTACAGCCTGACATTCACATTGGGCTCAGCAGGGGATTCATGCCAGCCACCAATGGCTGTCATGGCATTCGCAGGTGACCAGGCCCAGAACTTCCACTACTCGCCCATGGGTAATGCCACAAGCCAGGCTGCGAATGTGACATTCACAGCACGAGCTGAGAGGACGCGAGTGGCGTTCTACAGCGTGTATTACAACACGAGAAGCGACGACCACAGCTCGCTCTGTGGGCCAGTGATCGATGATGTGCGCGTCTGGGGCTTGAATGGAGCTGCTGGGTTGAAGGCAAGTATTGGGCTGCTGCTTGGCATTGTTAGCATTGTCAGTCTGATGTTGTTCTGA
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| Protein seq | TCAQLESLNVSVLGGASQTVDLQTLYNIEGWDAYALAFQATDEQASLEFRNPGMEDDPTCGPILDNVAIKKLFTPDKPKDNVVSNGDFEEGPWMFPNTSFGVLLPTNLDEQTSALPGWMIESNRAVRFVDSDQYTIPQGKRAIELLSGKEGIISQMVETTPQKEYSLTFTLGSAGDSCQPPMAVMAFAGDQAQNFHYSPMGNATSQAANVTFTARAERTRVAFYSVYYNTRSDDHSSLCGPVIDDVRVWGLNGAAGLKASIGLLLGIVSIVSLMLF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0531400 | OsNip_01t0531400-00 | Chr01 | 19129984 | 19131278 | - | RAP2018-11-26 | ||
| CDS seq | ACGTGTGCACAGCTAGAGTCACTCAATGTGTCTGTGCTCGGTGGTGCATCACAGACAGTGGACCTGCAGACATTGTACAACATAGAAGGCTGGGATGCATATGCACTGGCTTTTCAGGCAACAGATGAGCAGGCGAGCCTTGAGTTCAGGAACCCTGGTATGGAGGATGATCCGACTTGTGGGCCTATCCTTGACAACGTTGCCATAAAGAAGCTCTTCACTCCAGACAAACCAAAGGATAATGTGGTGTCGAATGGAGACTTTGAGGAGGGTCCATGGATGTTTCCAAACACGAGCTTTGGGGTGCTTCTCCCAACCAACCTCGATGAGCAGACGTCTGCCTTGCCTGGCTGGATGATTGAGTCAAATCGAGCTGTCCGCTTTGTCGACTCTGACCAGTACACCATTCCCCAAGGGAAGCGCGCCATTGAGCTTCTATCAGGGAAGGAAGGCATCATCTCACAGATGGTCGAGACAACCCCTCAGAAAGAGTACAGCCTGACATTCACATTGGGCTCAGCAGGGGATTCATGCCAGCCACCAATGGCTGTCATGGCATTCGCAGGTGACCAGGCCCAGAACTTCCACTACTCGCCCATGGGTAATGCCACAAGCCAGGCTGCGAATGTGACATTCACAGCACGAGCTGAGAGGACGCGAGTGGCGTTCTACAGCGTGTATTACAACACGAGAAGCGACGACCACAGCTCGCTCTGTGGGCCAGTGATCGATGATGTGCGCGTCTGGGGCTTGAATGGAGCTGCTGGGTTGAAGGCAAGTATTGGGCTGCTGCTTGGCATTGTTAGCATTGTCAGTCTGATGTTGTTCTGA
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| Protein seq | TCAQLESLNVSVLGGASQTVDLQTLYNIEGWDAYALAFQATDEQASLEFRNPGMEDDPTCGPILDNVAIKKLFTPDKPKDNVVSNGDFEEGPWMFPNTSFGVLLPTNLDEQTSALPGWMIESNRAVRFVDSDQYTIPQGKRAIELLSGKEGIISQMVETTPQKEYSLTFTLGSAGDSCQPPMAVMAFAGDQAQNFHYSPMGNATSQAANVTFTARAERTRVAFYSVYYNTRSDDHSSLCGPVIDDVRVWGLNGAAGLKASIGLLLGIVSIVSLMLF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0531400 | OsNip_01t0531400-01 | Chr01 | 19130129 | 19134027 | - | IsoSeq | ||
| CDS seq | AGCCCAGTGAGTAGGGCTGGCTCGGCTCGCTCACTCGGTCAGCTGCACACACACTGTACTTCGGCTCACTCTCTCCACTGTTCTTCTTCCTCGGCGAGGGGGGAAGGAGGAGGCGAGAGCTCGAGGCGGCTAGGAGGAGGAGATGGAGGGAGATACGGCGAGGAGGCTCGCATTGCTGGGGCTGTGCCTGGGCCTGCTTCTGCTGGCGCCCTCCCATCTGGCCTCGGCCGCTGCGGTGGAGGATGGCTTGCTCAGCAA
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| Protein seq | SPVSRAGSARSLGQLHTHCTSAHSLHCSSSSARGEGGGESSRRLGGGDGGRYGEEARIAGAVPGPASAGALPSGLGRCGGGWLAQQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.209641 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0756600 | RBH | 0.149653 | 0.000000 | 4.945178 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g34690 | RBH | 0.0 | 0.110508 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0531400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0034120 | SBH | 0.0 | 35.412712 | 6.692867 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0033660 | RBH | 0.000000 | 12.469103 | 2.594621 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0034100 | SBH | 0.237399 | 21.930580 | 15.181651 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0033370 | SBH | 0.0 | 1.375220 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0033120 | SBH | 0.0 | 50.390839 | 12.284827 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0326700 | RBH | 1.162047 | 1.7093615 | 3.0633155 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0019410 | RBH | 0.0 | 0.272388 | 0.063201 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0325000 | RBH | 3.8850525 | 6.7151455 | 12.542957 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0033050 | SBH | 0.0 | 0.466760 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0033110 | SBH | 0.000000 | 25.998222 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0033330 | SBH | 0.0 | 35.534344 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0033420 | RBH | 0.0 | 1.943282 | 1.414269 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0033210 | SBH | 0.000000 | 19.577785 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G019740 | RBH | 0.000000 | 1.335087 | 0.740375 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0019450 | RBH | 0.0 | 3.667017 | 0.354727 |
