Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g34690 | OGI:01061480 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:19129968-19133883 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCGGATCAACTCCTGAAATTTCTAATATATTGAAGGGATGATATTTGAACATTACAAGCTCTTGGCACACTAACCACCACCACCACACACTTCCCACAATGGCATGTTACTTTCTGAATCACAAAAGAAAGCAACAGAAACAGCCATACATAGCTTCAGGTAGCCTTAGCCTAAGCTCACAATCTCACATTACTCAACCTCATAGAAACTTCAAGCTTACTACCAAAACTAGTGGCCTCCTCATACTTACAGAAGAGGTTTATATATCTTTCGACCACAATCACTAAGAGATTCAGAACAACATCAGACTGACAATGCTAACAATGCCAAGCAGCAGCCCAATACTTGCCTTCAACCCAGCAGCTCCATTCAAGCCCCAGACGCGCACATCATCGATCACTGGCCCACAGAGCGAGCTGTGGTCGTCGCTTCTCGTGTTGTAATACACGCTGTAGAACGCCACTCGCGTCCTCTCAGCTCGTGCTGTGAATGTCACATTCGCAGCCTGGCTTGTGGCATTACCCATGGGCGAGTAGTGGAAGTTCTGGGCCTGGTCACCTGCGAATGCCATGACAGCCATTGGTGGCTGGCATGAATCCCCTGCTGAGCCCAATGTGAATGTCAGGCTGTACTCTTTCTGAGGGGTTGTCTCGACCATCTGTGAGATGATGCCTTCCTTCCCTGATAGAAGCTCAATGGCGCGCTTCCCTTGGGGAATGGTGTACTGGTCAGAGTCGACAAAGCGGACAGCTCGATTTGACTCAATCATCCAGCCAGGCAAGGCAGACGTCTGCTCATCGAGGTTGGTTGGGAGAAGCACCCCAAAGCTCGTGTTTGGAAACATCCATGGACCCTCCTCAAAGTCTCCATTCGACACCACATTATCTGTTGAAAGAAGACAACACCAAGTGATGACTTACGAACCATACACATGAGAAATGAACTAGAGCACCTCTAGCTCTCTTAAGACATCCTGTAAGGATATACACTCTACTAGGTATAGAGATAAGCAGAACTGTCATACCCTTTGGTTTGTCTGGAGTGAAGAGCTTCTTTATGGCAACGTTGTCAAGGATAGGCCCACAAGTCGGATCATCCTCCATACCAGGGTTCCTGAACTCAAGGCTCGCCTGCTCATCTGTTGCCTGAAAAGCCAGTGCATATGCATCCCAGCCTTCTATGTTGTACAATGTCTGCAGGTCCACTGTCTGTGATGCACCACCGAGCACAGACACATTGAGTGACTCTAGCTGTGCACACGTTCAGGCAGCACTGAACGTGATAGCATACTCTGAGCCCTTCTCAACCTGCACCACCTGCCCTATACTTGCATCGTTTCCAAGACGTACAGCATGATCCCCTGACATGAAAATCCAAATATTAAACACATCGAATACAAATCAATGGTGCAATTTGATTGATCAGAGGACAGAAGGAGAAAAGCTCTGTAGGATACCCTGTGGAACAATAAGAATCATGCCACCCTGGTGCTGGCCTGCTGAGATGAGCTCGACTGTCCCATTGATCGTCCAGCCAGGGATCGATGATGCACCCTCAGCAACTGAAGCAGATTTGACAAAACCACCAGCTGGTGCTGTCTCAAAGTCACCATTGCTGAGCAAGCCTGTTGTGCAAAGAGATCACTTGTTCATGTAAGTGCCAAGGTCAATTTAGTAACAGATCTCCGAAAGTAACACGGCTGCAATCCAAGATCAAGAGGCAGAAAATATGTTTCTCAAGAACTCTACTTAATATCTACCCATGTTATATGCGAAAGTGTTCCCATGCAAGTGAAGCCAAGTACATCTATGCAAGTCTGCAATGCAATAAAACCATAACTATTTTAAGTTGTGTAGCTCTAGCCTATTGTAGGATAGGACGAACCATAAATCTGATCCCCCACTGAACCTAGTACACTGTGCGCTGGACTATCTTTGTTATGGCATATATAAAATAATGTACAACTCAGACTGAGGGTGCGTTTAGTTCACGCCAAAATTGAAAGTTTGATTGAAATTGGAACGATGTGATGGAAAAGTTGGAAGTTTGAAGAAAAAGTTGGGAACTAAACCAGGCCTCAATTGAATGGCACTATACAACTCCAATCAAATGCATAACAGTGACAAAAAAAAACATTTCAGATAAAAACTTAAACCTTTCTAATCAAACATGTGTAACAAGTGAAATGAACCATCACAGTAGAGTTTGAGGAAGTTCATTTCCAAGACTGGTTTTTCTTATAAGTGACTTCCCAAGCTTGTTTTTTTATGGCTACCTTCCCAGTTGAAAGCATGGTTGCACAGATAAACTGTACCATAATTAAATCTCCTGTACAAAAAATTAACAGCTAAAACCTCTAATTCAGTACTATAGGAGAGAAAACATGTCCATGTTTTTCTATTGTACATCCAATGCATTTCATTGGGGCACTGCGGGTAGGCCACTTTACTGTGCTTCAATGTCCTTACAAGGACAGCCATGTGACTATGCACGACGATATTATGTGGTGAAAGTGAAACATCCACCAACCCTACCCTATCCACCATCCCACCATGGAGAGCCCCATGCAGTGGTCCAGACTCCAGAGCTGCCCATGTCCGGAGGAAATCACCACGGCCCGTAGCGTAATTCTGGGGAGGTTAAGGTACGAAAAATTAAAGAGACAGGCATGGACCCTCACGGCCATCCTTTTAATAAGCCATTTGACCTTTTTACTGGACGGTTCATTGAACACGTTTGCAGGACACTGGCTCACTGGTTTCTGCTGCTGTGCTGTTCGGCCTGGATCCAAGTTTACTACTACGCCACATTTCATTTTGACTTTCATGCAACTTCGTCCTTGCATAGAGGTTCATAGTACCTCCTTTGGACAAGATAGGAAACTGAAACTCTTTCAGTTACAAGCCTGAAGATTTTCTGAATCTTTCAAGTGGTTTTGTTAGCAGCATTCTGCACCCAACAGAATGTCTCTCTCATCATACAGGACAGCTCACTTGGGGGTTTTTAGTCATTTTCAAACATAAAATTGCATGATTCATAGAAAAGGAATAATTTTATAAAGATATATACATGCAGACTACTAAACTCGAAGGCAAGTAAGGAATAGGGGGGGGGGGGGTATTAAGCAGGTATAAATATTTTTATCCAATTAATGTACTTAAAAGAAGTGGTTAGTGGTTACACTGGTCACTGCAAAAAACTACAGTCGCAGGAAAGCTTTGGAACAAATTGCAGTATAACTGATCAGTTTTTGGCTGTCCAGACTTCAATAACAGGACAGGTTTGGATAATTGGTATGAATAAATGTTATCTCAACCTCCAAGGGCCAAGGCTCCTTCCTACTTTCTAGGACCTTTACTTTGCAGGTATACTGAACCATGCTCTACAAAAAGAGAAAAAAAAAAGAAGGGGGGGACTATCACACTCCTTCCTCACGAGTGCAACCACATCTCTTGATTCCTAGGGCACAAAGCTAACTTCTTGGCATGCTTTACCACACCATTTTCCTAGGGGATTATTTTTCTCTTCTCCTACCCACCCTTCAAATTTCTCCTCAGTGCTATGTATATGTGCTAATGAACTCCGCATTTGTTATACAAATGTGGGATGCGGAGAGGTACTAAATCGCATGATTTCTCTATTTGCTGAGATCTGTGATGCAGAAAACTACCCATCCCCACAAACTCCAGCCAAATATTCCACAAATATGTCAAAATACTGCCTTGGATCCTCCAGCATCAAAAGAACAGCAGCACTACTGATCCTCCAGCAAGGGCAAGAAACAGAAACGATCGAAGAGACAGCAAAGCATACCATCCTCCACCGCAGCGGCCGAGGCCAGATGGGAGGGCGCCAGCAGAAGCAGGCCCAGGCACAGCCCCAGCAATGCGAGCCTCCTCGCCGTATCTCCCTCCAT
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| CDS seq | ATGGAGGGAGATACGGCGAGGAGGCTCGCATTGCTGGGGCTGTGCCTGGGCCTGCTTCTGCTGGCGCCCTCCCATCTGGCCTCGGCCGCTGCGGTGGAGGATGTAGTAAACTTGGATCCAGGCCGAACAGCACAGCAGCAGAAACCAGTGAGCCAGTGTCCTGCAAACGTGTTCAATGAACCGTCCAGTAAAAAGAATTACGCTACGGGCCGTGGTGATTTCCTCCGGACATGGGCAGCTCTGGAGTCTGGACCACTGCATGGGGCTCTCCATGGTGGGATGGTGGATAGGGTAGGGTTGGTGGATGTTTCACTTTCACCACATAATATCGTCGTGCATAGTCACATGGCTGTCCTTGTAAGGACATTGAAGCACAGTAAAGTGGCCTACCCGCAGTGCCCCAATGAAATGCATTGGATGTACAATAGAAAAACATGGACATGTTTTCTCTCCTATAGTACTGAATTAGAGGTTTTAGCTGTTAATTTTTTGTACAGGAGATTTAATTATGGTACAGTTTATCTGTGCAACCATGCTTTCAACTGGGAAGGCTTGCTCAGCAATGGTGACTTTGAGACAGCACCAGCTGGTGGTTTTGTCAAATCTGCTTCAGTTGCTGAGGGTGCATCATCGATCCCTGGCTGGACGATCAATGGGACAGTCGAGCTCATCTCAGCAGGCCAGCACCAGGGTGGCATGATTCTTATTGTTCCACAGGGGGATCATGCTGTACGTCTTGGAAACGATGCAAGTATAGGGCAGGTGGTGCAGCTAGAGTCACTCAATGTGTCTGTGCTCGGTGGTGCATCACAGACAGTGGACCTGCAGACATTGTACAACATAGAAGGCTGGGATGCATATGCACTGGCTTTTCAGGCAACAGATGAGCAGGCGAGCCTTGAGTTCAGGAACCCTGGTATGGAGGATGATCCGACTTGTGGGCCTATCCTTGACAACGTTGCCATAAAGAAGCTCTTCACTCCAGACAAACCAAAGGATAATGTGGTGTCGAATGGAGACTTTGAGGAGGGTCCATGGATGTTTCCAAACACGAGCTTTGGGGTGCTTCTCCCAACCAACCTCGATGAGCAGACGTCTGCCTTGCCTGGCTGGATGATTGAGTCAAATCGAGCTGTCCGCTTTGTCGACTCTGACCAGTACACCATTCCCCAAGGGAAGCGCGCCATTGAGCTTCTATCAGGGAAGGAAGGCATCATCTCACAGATGGTCGAGACAACCCCTCAGAAAGAGTACAGCCTGACATTCACATTGGGCTCAGCAGGGGATTCATGCCAGCCACCAATGGCTGTCATGGCATTCGCAGGTGACCAGGCCCAGAACTTCCACTACTCGCCCATGGGTAATGCCACAAGCCAGGCTGCGAATGTGACATTCACAGCACGAGCTGAGAGGACGCGAGTGGCGTTCTACAGCGTGTATTACAACACGAGAAGCGACGACCACAGCTCGCTCTGTGGGCCAGTGATCGATGATGTGCGCGTCTGGGGCTTGAATGGAGCTGCTGGGTTGAAGGCAAGTATTGGGCTGCTGCTTGGCATTGTTAGCATTGTCAGTCTGATGTTGTTCTGA
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| Protein seq | MEGDTARRLALLGLCLGLLLLAPSHLASAAAVEDVVNLDPGRTAQQQKPVSQCPANVFNEPSSKKNYATGRGDFLRTWAALESGPLHGALHGGMVDRVGLVDVSLSPHNIVVHSHMAVLVRTLKHSKVAYPQCPNEMHWMYNRKTWTCFLSYSTELEVLAVNFLYRRFNYGTVYLCNHAFNWEGLLSNGDFETAPAGGFVKSASVAEGASSIPGWTINGTVELISAGQHQGGMILIVPQGDHAVRLGNDASIGQVVQLESLNVSVLGGASQTVDLQTLYNIEGWDAYALAFQATDEQASLEFRNPGMEDDPTCGPILDNVAIKKLFTPDKPKDNVVSNGDFEEGPWMFPNTSFGVLLPTNLDEQTSALPGWMIESNRAVRFVDSDQYTIPQGKRAIELLSGKEGIISQMVETTPQKEYSLTFTLGSAGDSCQPPMAVMAFAGDQAQNFHYSPMGNATSQAANVTFTARAERTRVAFYSVYYNTRSDDHSSLCGPVIDDVRVWGLNGAAGLKASIGLLLGIVSIVSLMLF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g34690 | LOC_Os01g34690.1 | Chr01 | 19129968 | 19133883 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAGGGAGATACGGCGAGGAGGCTCGCATTGCTGGGGCTGTGCCTGGGCCTGCTTCTGCTGGCGCCCTCCCATCTGGCCTCGGCCGCTGCGGTGGAGGATGTAGTAAACTTGGATCCAGGCCGAACAGCACAGCAGCAGAAACCAGTGAGCCAGTGTCCTGCAAACGTGTTCAATGAACCGTCCAGTAAAAAGAATTACGCTACGGGCCGTGGTGATTTCCTCCGGACATGGGCAGCTCTGGAGTCTGGACCACTGCATGGGGCTCTCCATGGTGGGATGGTGGATAGGGTAGGGTTGGTGGATGTTTCACTTTCACCACATAATATCGTCGTGCATAGTCACATGGCTGTCCTTGTAAGGACATTGAAGCACAGTAAAGTGGCCTACCCGCAGTGCCCCAATGAAATGCATTGGATGTACAATAGAAAAACATGGACATGTTTTCTCTCCTATAGTACTGAATTAGAGGTTTTAGCTGTTAATTTTTTGTACAGGAGATTTAATTATGGTACAGTTTATCTGTGCAACCATGCTTTCAACTGGGAAGGCTTGCTCAGCAATGGTGACTTTGAGACAGCACCAGCTGGTGGTTTTGTCAAATCTGCTTCAGTTGCTGAGGGTGCATCATCGATCCCTGGCTGGACGATCAATGGGACAGTCGAGCTCATCTCAGCAGGCCAGCACCAGGGTGGCATGATTCTTATTGTTCCACAGGGGGATCATGCTGTACGTCTTGGAAACGATGCAAGTATAGGGCAGGTGGTGCAGCTAGAGTCACTCAATGTGTCTGTGCTCGGTGGTGCATCACAGACAGTGGACCTGCAGACATTGTACAACATAGAAGGCTGGGATGCATATGCACTGGCTTTTCAGGCAACAGATGAGCAGGCGAGCCTTGAGTTCAGGAACCCTGGTATGGAGGATGATCCGACTTGTGGGCCTATCCTTGACAACGTTGCCATAAAGAAGCTCTTCACTCCAGACAAACCAAAGGATAATGTGGTGTCGAATGGAGACTTTGAGGAGGGTCCATGGATGTTTCCAAACACGAGCTTTGGGGTGCTTCTCCCAACCAACCTCGATGAGCAGACGTCTGCCTTGCCTGGCTGGATGATTGAGTCAAATCGAGCTGTCCGCTTTGTCGACTCTGACCAGTACACCATTCCCCAAGGGAAGCGCGCCATTGAGCTTCTATCAGGGAAGGAAGGCATCATCTCACAGATGGTCGAGACAACCCCTCAGAAAGAGTACAGCCTGACATTCACATTGGGCTCAGCAGGGGATTCATGCCAGCCACCAATGGCTGTCATGGCATTCGCAGGTGACCAGGCCCAGAACTTCCACTACTCGCCCATGGGTAATGCCACAAGCCAGGCTGCGAATGTGACATTCACAGCACGAGCTGAGAGGACGCGAGTGGCGTTCTACAGCGTGTATTACAACACGAGAAGCGACGACCACAGCTCGCTCTGTGGGCCAGTGATCGATGATGTGCGCGTCTGGGGCTTGAATGGAGCTGCTGGGTTGAAGGCAAGTATTGGGCTGCTGCTTGGCATTGTTAGCATTGTCAGTCTGATGTTGTTCTGA
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| Protein seq | MEGDTARRLALLGLCLGLLLLAPSHLASAAAVEDVVNLDPGRTAQQQKPVSQCPANVFNEPSSKKNYATGRGDFLRTWAALESGPLHGALHGGMVDRVGLVDVSLSPHNIVVHSHMAVLVRTLKHSKVAYPQCPNEMHWMYNRKTWTCFLSYSTELEVLAVNFLYRRFNYGTVYLCNHAFNWEGLLSNGDFETAPAGGFVKSASVAEGASSIPGWTINGTVELISAGQHQGGMILIVPQGDHAVRLGNDASIGQVVQLESLNVSVLGGASQTVDLQTLYNIEGWDAYALAFQATDEQASLEFRNPGMEDDPTCGPILDNVAIKKLFTPDKPKDNVVSNGDFEEGPWMFPNTSFGVLLPTNLDEQTSALPGWMIESNRAVRFVDSDQYTIPQGKRAIELLSGKEGIISQMVETTPQKEYSLTFTLGSAGDSCQPPMAVMAFAGDQAQNFHYSPMGNATSQAANVTFTARAERTRVAFYSVYYNTRSDDHSSLCGPVIDDVRVWGLNGAAGLKASIGLLLGIVSIVSLMLF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.110508 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0531400 | RBH | 0.0 | 0.209641 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g55190 | RBH | 0.092395 | 0.000000 | 1.162197 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0531400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0020100 | RBH | 0.062205 | 0.000000 | 1.859396 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0019720 | RBH | 0.000000 | 0.383129 | 0.692784 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0020070 | RBH | 0.0 | 2.595322 | 2.382780 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0019430 | RBH | 0.0 | 0.187078 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0019340 | RBH | 0.0 | 1.001432 | 2.424238 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0326700 | RBH | 1.162047 | 1.7093615 | 3.0633155 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0019410 | RBH | 0.0 | 0.272388 | 0.063201 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0325000 | SBH | 3.8850525 | 6.7151455 | 12.542957 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0019400 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0019310 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0019580 | RBH | 0.0 | 15.523471 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0019330 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0019220 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G019740 | RBH | 0.000000 | 1.335087 | 0.740375 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0019450 | RBH | 0.0 | 3.667017 | 0.354727 |
