Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0531300 | OGI:01061470 | 10/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:19123194-19126486 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TAATTACAGATTATGCACAGCCAAGCTCACATGTACAACAGGGGACAACGCCGCATCAAAAGCCAAGTCAAAACACAATTACAGAGCTCAATTGCAAAGCTATGGCAACAAGCTACAAAAACTGTATGGCGCTGGCGCGTTTTTTGCCAAAAAGAATGATGTCTAGTTATCTACTCTCACTGTGTTGTACTAGTATGAATGAACCTCCCCGCTTGTTTCAGATCACCACCAAGTCATGCAAAGACAGGTTCAGTTCTTGGGCAAGTTGTGCTGATTGACCACCCCGCCTGCACCAACAAAATATGAAACCATCACAGAATGTCAGGAAAGCTAGCTCCAACAAATGACGTGGGTAGCAAAAAAAAAATGGTGCACACGAACAACTGTCAGCAAGCTTAAGAAAACAACAGTCTGATAAAGGCCGAGTTTAGTTCCAAATTATTTCTTCAAACTTCCAACTTTTCCATCATATCGTTCCAATTTCAACCAAACTTCTAATTTTGGCGTGAACTAAACACACCCAAAGTAAAGGATAAAGCATCTCATACAGGGAGGGGAGGGGAAGGAAAGGAATTACATAATTAAGGGGTGTAGAACTTGCTGAATCTTTTGCAAATGGTTAAAACACCGACTGCAACGTTGCAACCTGTGTACAATACACACCAGCGAAGTCAGCAACAGTCCAGTTCATCTTGACATAGACAGAGCAATAGGTTATAGGATGCTACAAACGCTGCAGTTTTTTAAAACAATGGTTCCTAACTGAAGTGCAGGGACAGGACCCACTTGTCACCTCACATCCAGTGTCTCTTTGCAATTTGCAGGTTTTGCGGCGTCCTTTAAATAGCATTCCCTTGAATAAGGTTAATGCACGTACCTCTGCTCAGCCTGAATATCAACTCCAACTGCTGAATGAGCTGACAATGTTGAACGAATAACTGGTCCAAAGATCTTTATAAGATCCAACAACAATTCCAAAGAAACAATGGCATGCCTACAAATTGAAATTAAAGGCAAAGTAACCATAAGACAAAGTTACTACTAAACCAAACATTTTCTAATGTAGGATGCCAATATCTCCATGGTTTTGTAAAGAAAATAGATCCATGACTTTGCTTGCAATAGAATGAACATACTAACAAGAGGATAGACAATTCAATTCAACAGCAGCATCTTGTGTCTACATGTGTGCACAGAGCATGTGCGCTTAAGTTACTATGTATCACTTGGTCCAGTCAGACAAGAACCAACATGCCAATATATCACCTTTCAGCCTTGCTGGTCAGTAACCCCGCAAGAACAGGCAGAAAGCTTAAGAAAATGTCTAGACTGAAGAGATCAAGTTTCCTCTTCAGAGTACTAACAACATCAGCTTGAACCTGTAAAAAAAGAGTCAAACCATTAGCAGCTAAAGAATACGAAGTACATGTACATCCAAGAATAACGCACGGCATCTTGAGAAATACTTACTGCATTGTCGGGCAACTTTGCCACTGCAGCAATTGCTCCTTTGATACCATTTTGGTCAAAGACATGCCGCATCATCTGAAGACAGTTAACATTAATATCATATGCTGATGGAGTGATGGCTATGATATATGCAACTTTTACTAGTTTTCAAATGCTTTCCTCACTGACTATTCCCCACTCTCCACTTGTAGGATAATTAGTAGATGGTGGGAAAAGTGCATGTCAATGCATAATTTGCATACAGGTGTAGATCACTCTCATCTTATATCAGGCTATCAGAAATAATGGAGCTGATTAATTTTAGGGTGTTGCTGGATTGATCAACAATCTTCACTAGAGCTGACTTCACCTTCAATTTAGAGGTGTGTACACACCAATTGTCTTTAAGAAAATGCCAATAAATCATTTAACGCAAGTATCAAAGAAAAAGGTAATGTTCAATTCTAAGTTGTCTAATTGTACTCAATAGACTAACAACAATAGGCCATTTTCCCTGTACTGAATAGCCTAAAGAACACAGAAGAGCTTCTTTTTTGGGAATACGCAAGGAGCGCATCTTTGTATTAAGAAGGAATAAATGTATGCATAAAGCGGGCCAAAAAGACAAAGCGAAGGGGACAGGGCACAGGAGAAGAACCAAGAAACAAAAGCCTAATCTCCAACTAAATTTTGCGACCCTTCTCTACTAACATGAGCTACCAAAGCAGGGATTGCAGCTCTAGCTAGCCGCCACAGCTCCGCTTCACCCGTCATAACCCTTACAACCTCCGCCCAAGATCTGCTCTTCTGGTTGAAGACTCGATTGTTTCTTTCCTTCCAGATCGTCCATGCAACCAACGTCGCGATGGTGTCGAAACCCCGGCGATGTTCCTTGACCATCCTCTTGCGACAGTCGCACAACCATGAGAGGAACGAGTGTTCATTGATCGGTAAGCACTCCGAATGCCCGATAGCTCTGAGCGCAACCCACCACAGTTGCCGCGACTCCGGGCATGCGACCAAGAGATGATCAATCGTCTCTTCGCATTGATCACACAGAACACATCGATCCGGGTGCGACAAACCACGACTCCGGAGGCGGTATGTTGTCCAACAACGGTTAAGAGCTACCAACCAAAGGAAGTAGCGACAGCGAGGGGGCGCCAAAGATTGCCAAATTGGCTTGTGCTGGAGACGAGTTCTTCCAAAAAAGAGAACACAATAAGCCGAGCGGGAAGAGTATTCTCCCGAGGTCTCCCACCGCCAAGATAGAGAGTCCGGCTCTTCGGAAAGCTGCACTGACCGAAGGCAATCCCAAAGCTTGAAATACTCTAGGATCGCTTGAATACCCAACGCCGAACTGGATGTCCTGGATCCATCTTCTATCAGTCATTGCCTCGGCCACCGTGCGATGATTCCGGAGACGAGCAGGGACTGCAGCATAGACAGCCGGTGCTAGCGACAGAAGAGCTTCTTCATATGTATAATCTATCATGCAAAGGTATGCAAGATTGGTTCCCTGTTTATTGGATACAAAAGGTCAAGGAAGGAATTCTATGGTGCACATGAGCTGGTAACAAACAGGAGTCTGCAAGTAAAAGATCAGAGACAAGACACACCTCTAACTTTGTCAGCCGAGATTTTACGGCATTTATAAATTCATCATGGCTCTGCATCAAATCGATTGGAATCATTGCTTCATCAATTGTTGACAAGTCCTTCTCATATGCCTGACTTGGTTCTGCCTGTCCATTACAACCATTGCAAAATATAATGATTTGAGTAATGGAAAAATTCGTAAATGCTAGAGAGCATGAACAAATAAAAATGGAGCAAAGGTAAAG
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| CDS seq | CTTTACCTTTGCTCCATTTTTATTTGTTCATGCTCTCTAGCATTTACGAATTTTTCCATTACTCAAATCATTATATTTTGCAATGGTTGTAATGGACAGGCAGAACCAAGTCAGGCATATGAGAAGGACTTGTCAACAATTGATGAAGCAATGATTCCAATCGATTTGATGCAGAGCCATGATGAATTTATAAATGCCGTAAAATCTCGGCTGACAAAGTTAGAGATGATGCGGCATGTCTTTGACCAAAATGGTATCAAAGGAGCAATTGCTGCAGTGGCAAAGTTGCCCGACAATGCAGTTCAAGCTGATGTTGTTAGTACTCTGAAGAGGAAACTTGATCTCTTCAGTCTAGACATTTTCTTAAGCTTTCTGCCTGTTCTTGCGGGGTTACTGACCAGCAAGGCTGAAAGGCATGCCATTGTTTCTTTGGAATTGTTGTTGGATCTTATAAAGATCTTTGGACCAGTTATTCGTTCAACATTGTCAGCTCATTCAGCAGTTGGAGTTGATATTCAGGCTGAGCAGAGGTTGCAACGTTGCAGTCGGTGTTTTAACCATTTGCAAAAGATTCAGCAAGTTCTACACCCCTTAATTATGCGGGGTGGTCAATCAGCACAACTTGCCCAAGAACTGAACCTGTCTTTGCATGACTTGGTGGTGATCTGA
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| Protein seq | LYLCSIFICSCSLAFTNFSITQIIIFCNGCNGQAEPSQAYEKDLSTIDEAMIPIDLMQSHDEFINAVKSRLTKLEMMRHVFDQNGIKGAIAAVAKLPDNAVQADVVSTLKRKLDLFSLDIFLSFLPVLAGLLTSKAERHAIVSLELLLDLIKIFGPVIRSTLSAHSAVGVDIQAEQRLQRCSRCFNHLQKIQQVLHPLIMRGGQSAQLAQELNLSLHDLVVI |
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| Function | Katanin p80 WD40 repeat-containing subunit B1 homolog [UniProtKB/Swiss-Prot:Q8H0T9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0531300 | OsNip_01t0531300-00 | Chr01 | 19123194 | 19126486 | - | RAP2018-11-26 | ||
| CDS seq | CTTTACCTTTGCTCCATTTTTATTTGTTCATGCTCTCTAGCATTTACGAATTTTTCCATTACTCAAATCATTATATTTTGCAATGGTTGTAATGGACAGGCAGAACCAAGTCAGGCATATGAGAAGGACTTGTCAACAATTGATGAAGCAATGATTCCAATCGATTTGATGCAGAGCCATGATGAATTTATAAATGCCGTAAAATCTCGGCTGACAAAGTTAGAGATGATGCGGCATGTCTTTGACCAAAATGGTATCAAAGGAGCAATTGCTGCAGTGGCAAAGTTGCCCGACAATGCAGTTCAAGCTGATGTTGTTAGTACTCTGAAGAGGAAACTTGATCTCTTCAGTCTAGACATTTTCTTAAGCTTTCTGCCTGTTCTTGCGGGGTTACTGACCAGCAAGGCTGAAAGGCATGCCATTGTTTCTTTGGAATTGTTGTTGGATCTTATAAAGATCTTTGGACCAGTTATTCGTTCAACATTGTCAGCTCATTCAGCAGTTGGAGTTGATATTCAGGCTGAGCAGAGGTTGCAACGTTGCAGTCGGTGTTTTAACCATTTGCAAAAGATTCAGCAAGTTCTACACCCCTTAATTATGCGGGGTGGTCAATCAGCACAACTTGCCCAAGAACTGAACCTGTCTTTGCATGACTTGGTGGTGATCTGA
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| Protein seq | LYLCSIFICSCSLAFTNFSITQIIIFCNGCNGQAEPSQAYEKDLSTIDEAMIPIDLMQSHDEFINAVKSRLTKLEMMRHVFDQNGIKGAIAAVAKLPDNAVQADVVSTLKRKLDLFSLDIFLSFLPVLAGLLTSKAERHAIVSLELLLDLIKIFGPVIRSTLSAHSAVGVDIQAEQRLQRCSRCFNHLQKIQQVLHPLIMRGGQSAQLAQELNLSLHDLVVI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0780400 | RBH | 2.716963 | 2.210210 | 6.450016 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g34680 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0531300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0020090 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0019710 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0020060 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0019420 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0034840 | SBH | 6.425249 | 20.029707 | 22.861834 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0326600 | RBH | 0 | 0.0986575 | 0.056115 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0019400 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0325000 | SBH | 3.8850525 | 6.7151455 | 12.542957 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0034700 | SBH | 0.232354 | 0.191884 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0034770 | SBH | 0.454174 | 14.076297 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0019570 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0035100 | SBH | 0.915610 | 1.668587 | 0.925793 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0034900 | SBH | 0.117624 | 5.665008 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G019730 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0019440 | RBH | 0.0 | 0.0 | 0.0 |
