Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g34680 | OGI:01061470 | 10/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:19123411-19129192 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAGATCACCACCAAGTCATGCAAAGACAGGTTCAGTTCTTGGGCAAGTTGTGCTGATTGACCACCCCGCCTGCACCAACAAAATATGAAACCATCACAGAATGTCAGGAAAGCTAGCTCCAACAAATGACGTGGGTAGCAAAAAAAAAATGGTGCACACGAACAACTGTCAGCAAGCTTAAGAAAACAACAGTCTGATAAAGGCCGAGTTTAGTTCCAAATTATTTCTTCAAACTTCCAACTTTTCCATCATATCGTTCCAATTTCAACCAAACTTCTAATTTTGGCGTGAACTAAACACACCCAAAGTAAAGGATAAAGCATCTCATACAGGGAGGGGAGGGGAAGGAAAGGAATTACATAATTAAGGGGTGTAGAACTTGCTGAATCTTTTGCAAATGGTTAAAACACCGACTGCAACGTTGCAACCTGTGTACAATACACACCAGCGAAGTCAGCAACAGTCCAGTTCATCTTGACATAGACAGAGCAATAGGTTATAGGATGCTACAAACGCTGCAGTTTTTTAAAACAATGGTTCCTAACTGAAGTGCAGGGACAGGACCCACTTGTCACCTCACATCCAGTGTCTCTTTGCAATTTGCAGGTTTTGCGGCGTCCTTTAAATAGCATTCCCTTGAATAAGGTTAATGCACGTACCTCTGCTCAGCCTGAATATCAACTCCAACTGCTGAATGAGCTGACAATGTTGAACGAATAACTGGTCCAAAGATCTTTATAAGATCCAACAACAATTCCAAAGAAACAATGGCATGCCTACAAATTGAAATTAAAGGCAAAGTAACCATAAGACAAAGTTACTACTAAACCAAACATTTTCTAATGTAGGATGCCAATATCTCCATGGTTTTGTAAAGAAAATAGATCCATGACTTTGCTTGCAATAGAATGAACATACTAACAAGAGGATAGACAATTCAATTCAACAGCAGCATCTTGTGTCTACATGTGTGCACAGAGCATGTGCGCTTAAGTTACTATGTATCACTTGGTCCAGTCAGACAAGAACCAACATGCCAATATATCACCTTTCAGCCTTGCTGGTCAGTAACCCCGCAAGAACAGGCAGAAAGCTTAAGAAAATGTCTAGACTGAAGAGATCAAGTTTCCTCTTCAGAGTACTAACAACATCAGCTTGAACCTGTAAAAAAAGAGTCAAACCATTAGCAGCTAAAGAATACGAAGTACATGTACATCCAAGAATAACGCACGGCATCTTGAGAAATACTTACTGCATTGTCGGGCAACTTTGCCACTGCAGCAATTGCTCCTTTGATACCATTTTGGTCAAAGACATGCCGCATCATCTGAAGACAGTTAACATTAATATCATATGCTGATGGAGTGATGGCTATGATATATGCAACTTTTACTAGTTTTCAAATGCTTTCCTCACTGACTATTCCCCACTCTCCACTTGTAGGATAATTAGTAGATGGTGGGAAAAGTGCATGTCAATGCATAATTTGCATACAGGTGTAGATCACTCTCATCTTATATCAGGCTATCAGAAATAATGGAGCTGATTAATTTTAGGGTGTTGCTGGATTGATCAACAATCTTCACTAGAGCTGACTTCACCTTCAATTTAGAGGTGTGTACACACCAATTGTCTTTAAGAAAATGCCAATAAATCATTTAACGCAAGTATCAAAGAAAAAGGTAATGTTCAATTCTAAGTTGTCTAATTGTACTCAATAGACTAACAACAATAGGCCATTTTCCCTGTACTGAATAGCCTAAAGAACACAGAAGAGCTTCTTTTTTGGGAATACGCAAGGAGCGCATCTTTGTATTAAGAAGGAATAAATGTATGCATAAAGCGGGCCAAAAAGACAAAGCGAAGGGGACAGGGCACAGGAGAAGAACCAAGAAACAAAAGCCTAATCTCCAACTAAATTTTGCGACCCTTCTCTACTAACATGAGCTACCAAAGCAGGGATTGCAGCTCTAGCTAGCCGCCACAGCTCCGCTTCACCCGTCATAACCCTTACAACCTCCGCCCAAGATCTGCTCTTCTGGTTGAAGACTCGATTGTTTCTTTCCTTCCAGATCGTCCATGCAACCAACGTCGCGATGGTGTCGAAACCCCGGCGATGTTCCTTGACCATCCTCTTGCGACAGTCGCACAACCATGAGAGGAACGAGTGTTCATTGATCGGTAAGCACTCCGAATGCCCGATAGCTCTGAGCGCAACCCACCACAGTTGCCGCGACTCCGGGCATGCGACCAAGAGATGATCAATCGTCTCTTCGCATTGATCACACAGAACACATCGATCCGGGTGCGACAAACCACGACTCCGGAGGCGGTATGTTGTCCAACAACGGTTAAGAGCTACCAACCAAAGGAAGTAGCGACAGCGAGGGGGCGCCAAAGATTGCCAAATTGGCTTGTGCTGGAGACGAGTTCTTCCAAAAAAGAGAACACAATAAGCCGAGCGGGAAGAGTATTCTCCCGAGGTCTCCCACCGCCAAGATAGAGAGTCCGGCTCTTCGGAAAGCTGCACTGACCGAAGGCAATCCCAAAGCTTGAAATACTCTAGGATCGCTTGAATACCCAACGCCGAACTGGATGTCCTGGATCCATCTTCTATCAGTCATTGCCTCGGCCACCGTGCGATGATTCCGGAGACGAGCAGGGACTGCAGCATAGACAGCCGGTGCTAGCGACAGAAGAGCTTCTTCATATGTATAATCTATCATGCAAAGGTATGCAAGATTGGTTCCCTGTTTATTGGATACAAAAGGTCAAGGAAGGAATTCTATGGTGCACATGAGCTGGTAACAAACAGGAGTCTGCAAGTAAAAGATCAGAGACAAGACACACCTCTAACTTTGTCAGCCGAGATTTTACGGCATTTATAAATTCATCATGGCTCTGCATCAAATCGATTGGAATCATTGCTTCATCAATTGTTGACAAGTCCTTCTCATATGCCTGACTTGGTTCTGCCTGTCCATTACAACCATTGCAAAATATAATGATTTGAGTAATGGAAAAATTCGTAAATGCTAGAGAGCATGAACAAATAAAAATGGAGCAAAGGTAAAGTCATATTTTTCTATCCCATATTCTGATTTTATTTCTGAAAATACTCCAATCTCCCAGAAGTACTTAAGTCCACAAAACATTACATTATGATTTATGACAATCTGGTTTCTAACAATACTTTATCCCTTCTATTTCTATCTCCAAATAGCATGTACTTCGCAGTAAGGGGAAAAACGAATACAGAAATTTACATTGTATAATATGCAAGAATAAGTATGTATGACATGTGGTTTTATTCCTTGACAGAATCTGCTCGTTGGTGGATGAGAGGACGACGGCGGTGGCTACCCTAGAGCAGCGATGGAAGCACCAACCCTTCACAAGAGCTCGGACGTCGTGCTATAGGGTCGACCAACGGGCGCGGAGTCCGTTTCTGCCTCTCTAGTCCTCACGCCGTCAACAACCTAGGCCGACAAGAGCACGATTTTTCCTGCCTCCTCACCGTCGCCGCCAGCCATCTCGTCGTGTGTCCCCAAGTCCTACTGCTGCGCCTACTCAATGTCCTCTGCTGCGATGGTGGCGTCGCACCTGTCATCATCGTTGTCGTGCTCAGGCATCCTACGCCTTCTCCACCGCAAAGGCCACCGTGCCGCTTGCCCACTTGGTTGACCTGCTCTAGCTCCTGTTCCACACGTCCGTCTTCACTATTATCCTCTCCTACTGCCTTGTCCTTCTGCCCCTATCATGTGCACCCTCTGTGCTACCAACCGGCCCGCCTTCTCCCACTGCCCCTTTCTGCCATTGCTGCCATCGGGAAGGATACTCCCCTCCCAATACCATCAGTAACTTAGGACGAGGCTGCTAACTTGGATAGAGAGGGTTGCTTGTTCGTCGGCGCTAGAGGGGAGAAGGTGGCAACGAGCAACAATGAACTGAGGAGCTGGGCAGTGTATCGGTAGGGGTAAGAGGAGGGAGAAGAAAGAGAGATGCCACTGACATGTGGGCACCACATACTAACTCAGGCAGTTTGATCAGGTCAAAGAGCCCTGCCAGCGAAAATTGCCCCCAAATCGACCGAGGGAAGCAAACTACACCGGTTTTAATATTTAAGGGTCAAGATATATGATATAACGTTGAGGGAAACGACTTAGATTGGAGCTATATTTGAGGGAGTCAAAGTGCACTTATTTCTAACGGGAAGATGAGTACAGTGTGTTAAAACTGAGGCCGATGGTTATGGCCCGGATCTAGTATGGGCCAGAACGGGCCGTTCAGCGTAGGGGGTTTAACGGGAAAAAGTATACTTTAACTCCCTCAACTATCGCCCGAGTATGATTCATGTCCTCCAACCACAAAACTGGGTATATCAACCACTCCAACTATCAAAACCGGTGCAAACAATGTCCCTCAGTGGTTTTGGCTGACGTGGCGCTTACGTGTCATTCTTGACCGAACCTTTGTCCTACGTGCTGCTTACGTGGCATTAGAATAAAAACAGAAATAAAAGAAATATGTGGGACCCATATATCATTCACACAAAAAAAGTATTGTGGGATCCAATGACATGTGGGACCCACATGTCATCCTCCCACTCCCTTCTTCCTCCCCCTCTATCTCCCTTCTTCAATTGCATACACCCCTTGCACCTCTCCCACACTCACTTGAGCTTTGTGTTCATCCGCTTAGTGTGTTTGAGGGTTGTTCTAGCCAAGAGTCAAGTACATTGCTTCCACTGTAGAGCTAGTGTGGCACTTGATCATCTCCGAGCCGGGTCATCGCTTATTACTCTTGGAGGTTGCCGTCTACTAGACGGCTTGTGGAGGTGTTGCCCGGTGACCTCTCCGAGGAGATTGTGGAGGAGGCCCAGCGCCGGTTTGTGAGTGGTTTGGAGTTCACCACTTTCGGAGTGAAGGAAGAACTACCCCTAGTGATCGAGGCTTAGATAGTCCTCTCCTTGGGCCAGCTCCCACCTTGCCCACCCCTTGACGAAGGAGGCGTGCGGTGGCTTCGTGGTTGAGCGGTGGAGTTGGGCTCGCCTCAACGGGGATTAGGAAACCGGCGAGTTTCCGAACCTCGGTGAAAAACTCCTTGTCTCTTGTCTCATTTATTTGTTGCATTTACATTTGTGTAATTTACATTCATAGAGACATATTTGAGCACATATCACCCTAGGATTGCAAAACTTAACTTAGGTGTATTTTACTTTCCTAGAGATATACTTGAGCCACTATCACTCTAGGATTGCAAAACATAACTTAGTTGCTTTGTTAGACTTATCCCTCACCAAGCCTAGCAACTTATGTTAGTTTTGATTAGGTGTCATTTAGTTTTAAATCGTCTATTCACCCTCCTCTAGTCAACATCTCGATCCTACACGTGCGCTGAGGGAGGAGCTCCCGGCCGTCCCCGCGCGGGTGAGGAGCTCGCTGTCGTCTGCGCGCGGGGGAGGAGCTCGACGCCGTCCGCGCGCGTAGGAGGAGCTCAACACCATCTTGCCGGTGCCCATCGGCATCTCGAGCAGCGCGTGGCCGCGCGTGTCGAGGGCGCGCTTTAGCTCACCCATGTATCGCGGCCGCCGCTGCTCCCGCTCCCTACCGCCGTCCCCACCGCCACTGCCACCGCTACCGCCCCCGCCCGCTGCCGCCGCCGCTCCCCACCGCCATCCCCACCAAAGAGAAATGCCGAGGGAAAGAGAGAGATAAGGGAGAGAGAGAAAGGGAGGAGGAAGAAGGGAAGGAGAGGGAGGATGACATGTGGGTCCCACAT
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| CDS seq | ATGTGGGACCCACATGTCATCCTCCCTCTCCTTCCCTTCTTCCTCCTCCCTTTCTCTCTCTCCCTTATCTCTCTCTTTCCCTCGGCATTTCTCTTTGGTGGGGATGGCGGTGGGGAGCGGCGGCGGCAGCGGGCGGGGGCGGTAGCGGTGGCAGTGGCGGTGGGGACGGCGGTAGGGAGCGGGAGCAGCGGCGGCCGCGATACATGGGCAGAACCAAGTCAGGCATATGAGAAGGACTTGTCAACAATTGATGAAGCAATGATTCCAATCGATTTGATGCAGAGCCATGATGAATTTATAAATGCCGTAAAATCTCGGCTGACAAAGTTAGAGGGAACCAATCTTGCATACCTTTGCATGATAGATTATACATATGAAGAAGCTCTTCTGTCGCTAGCACCGGCTGTCTATGCTGCAGTCCCTGCTCGTCTCCGGAATCATCGCACGGTGGCCGAGGCAATGACTGATAGAAGATGGATCCAGGACATCCAGTTCGGCGTTGGGTATTCAAGCGATCCTAGAGTATTTCAAGCTTTGGGATTGCCTTCGACGATTGATCATCTCTTGGTCGCATGCCCGGAGTCGCGGCAACTGTGGTGGGTTGCGCTCAGAGCTATCGGGCATTCGGAGTGCTTACCGATCAATGAACACTCGTTCCTCTCATGGTTGTGCGACTGTCGCAAGAGGATGGTCAAGGAACATCGCCGGGGTTTCGACACCATCGCGACGTTGGTTGCATGGACGATCTGGAAGGAAAGAAACAATCGAGTCTTCAACCAGAAGAGCAGATCTTGGGCGGAGGTTGTAAGGGTTATGACGGGTGAAGCGGAGCTGTGGCGGCTAGCTAGAGCTGCAATCCCTGCTTTGGTAGCTCATATGATGCGGCATGTCTTTGACCAAAATGGTATCAAAGGAGCAATTGCTGCAGTGGCAAAGTTGCCCGACAATGCAGTTCAAGCTGATGTTGTTAGTACTCTGAAGAGGAAACTTGATCTCTTCAGTCTAGACATTTTCTTAAGCTTTCTGCCTGTTCTTGCGGGGTTACTGACCAGCAAGGCTGAAAGGCATGCCATTGTTTCTTTGGAATTGTTGTTGGATCTTATAAAGATCTTTGGACCAGTTATTCGTTCAACATTGTCAGCTCATTCAGCAGTTGGAGTTGATATTCAGGCTGAGCAGAGGCGGGGTGGTCAATCAGCACAACTTGCCCAAGAACTGAACCTGTCTTTGCATGACTTGGTGGTGATCTGA
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| Protein seq | MWDPHVILPLLPFFLLPFSLSLISLFPSAFLFGGDGGGERRRQRAGAVAVAVAVGTAVGSGSSGGRDTWAEPSQAYEKDLSTIDEAMIPIDLMQSHDEFINAVKSRLTKLEGTNLAYLCMIDYTYEEALLSLAPAVYAAVPARLRNHRTVAEAMTDRRWIQDIQFGVGYSSDPRVFQALGLPSTIDHLLVACPESRQLWWVALRAIGHSECLPINEHSFLSWLCDCRKRMVKEHRRGFDTIATLVAWTIWKERNNRVFNQKSRSWAEVVRVMTGEAELWRLARAAIPALVAHMMRHVFDQNGIKGAIAAVAKLPDNAVQADVVSTLKRKLDLFSLDIFLSFLPVLAGLLTSKAERHAIVSLELLLDLIKIFGPVIRSTLSAHSAVGVDIQAEQRRGGQSAQLAQELNLSLHDLVVI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g34680 | LOC_Os01g34680.1 | Chr01 | 19123411 | 19129192 | - | MSU_osa1r7 | ||
| CDS seq | ATGTGGGACCCACATGTCATCCTCCCTCTCCTTCCCTTCTTCCTCCTCCCTTTCTCTCTCTCCCTTATCTCTCTCTTTCCCTCGGCATTTCTCTTTGGTGGGGATGGCGGTGGGGAGCGGCGGCGGCAGCGGGCGGGGGCGGTAGCGGTGGCAGTGGCGGTGGGGACGGCGGTAGGGAGCGGGAGCAGCGGCGGCCGCGATACATGGGCAGAACCAAGTCAGGCATATGAGAAGGACTTGTCAACAATTGATGAAGCAATGATTCCAATCGATTTGATGCAGAGCCATGATGAATTTATAAATGCCGTAAAATCTCGGCTGACAAAGTTAGAGGGAACCAATCTTGCATACCTTTGCATGATAGATTATACATATGAAGAAGCTCTTCTGTCGCTAGCACCGGCTGTCTATGCTGCAGTCCCTGCTCGTCTCCGGAATCATCGCACGGTGGCCGAGGCAATGACTGATAGAAGATGGATCCAGGACATCCAGTTCGGCGTTGGGTATTCAAGCGATCCTAGAGTATTTCAAGCTTTGGGATTGCCTTCGACGATTGATCATCTCTTGGTCGCATGCCCGGAGTCGCGGCAACTGTGGTGGGTTGCGCTCAGAGCTATCGGGCATTCGGAGTGCTTACCGATCAATGAACACTCGTTCCTCTCATGGTTGTGCGACTGTCGCAAGAGGATGGTCAAGGAACATCGCCGGGGTTTCGACACCATCGCGACGTTGGTTGCATGGACGATCTGGAAGGAAAGAAACAATCGAGTCTTCAACCAGAAGAGCAGATCTTGGGCGGAGGTTGTAAGGGTTATGACGGGTGAAGCGGAGCTGTGGCGGCTAGCTAGAGCTGCAATCCCTGCTTTGGTAGCTCATATGATGCGGCATGTCTTTGACCAAAATGGTATCAAAGGAGCAATTGCTGCAGTGGCAAAGTTGCCCGACAATGCAGTTCAAGCTGATGTTGTTAGTACTCTGAAGAGGAAACTTGATCTCTTCAGTCTAGACATTTTCTTAAGCTTTCTGCCTGTTCTTGCGGGGTTACTGACCAGCAAGGCTGAAAGGCATGCCATTGTTTCTTTGGAATTGTTGTTGGATCTTATAAAGATCTTTGGACCAGTTATTCGTTCAACATTGTCAGCTCATTCAGCAGTTGGAGTTGATATTCAGGCTGAGCAGAGGCGGGGTGGTCAATCAGCACAACTTGCCCAAGAACTGAACCTGTCTTTGCATGACTTGGTGGTGATCTGA
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| Protein seq | MWDPHVILPLLPFFLLPFSLSLISLFPSAFLFGGDGGGERRRQRAGAVAVAVAVGTAVGSGSSGGRDTWAEPSQAYEKDLSTIDEAMIPIDLMQSHDEFINAVKSRLTKLEGTNLAYLCMIDYTYEEALLSLAPAVYAAVPARLRNHRTVAEAMTDRRWIQDIQFGVGYSSDPRVFQALGLPSTIDHLLVACPESRQLWWVALRAIGHSECLPINEHSFLSWLCDCRKRMVKEHRRGFDTIATLVAWTIWKERNNRVFNQKSRSWAEVVRVMTGEAELWRLARAAIPALVAHMMRHVFDQNGIKGAIAAVAKLPDNAVQADVVSTLKRKLDLFSLDIFLSFLPVLAGLLTSKAERHAIVSLELLLDLIKIFGPVIRSTLSAHSAVGVDIQAEQRRGGQSAQLAQELNLSLHDLVVI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0531300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0531300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0020090 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0019710 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0020060 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0019420 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0326600 | RBH | 0 | 0.0986575 | 0.056115 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0019400 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0325000 | SBH | 3.8850525 | 6.7151455 | 12.542957 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0019570 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G019730 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0019440 | RBH | 0.0 | 0.0 | 0.0 |
