Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0358700 | OGI:01044920 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:14529887-14531604 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGAAAAAACTCCTTTTGACTAGGATTTTCAGTTATGCTAAAACATTCGTTTCCCATAACAGATAGCGCAACATCGTGCATCAAATCGTGTATCCTACATAACCTTCTATAACAATTCCCATGTTTGCTTCCATATTCCTGAAATGGGACTTGTTTCATGTCTTGGAAGAATGACCTTGAGGCCAACTCATGGAAAATATAGTTTCCAATGGTTTCTAGAGGGACATTTTTTTTCGTCTGGGATAAAGCCATTGGCCATCCATACGTGGATTAGATTGTCTACGTCAATCACATAATCTTTGGGAAACATAGCACAGAAAGCAAAGCATTGTTTCATGTATGAGGGCAAGTCATCATAGCTGAGCTTGAGTATATGTAAAATTCCAGTCTCCTCATTGCATATACTGCTTCTCATTAATATGGCCTGCCATTCTTGCACAGTTTCCTTGGTACGAAGTAGAGAGCCTAGTGCTGTTGCGGCTAATGGAGATCCAACACATCTGTTGACAAACTTATCAATCATTTCAACTTGCTCATTAGGCTTTTCATCCTTTCTCAAACTAAATGCTCTCGTGTCAATGATTTCCTTGATAATGCTGTTCTCCAGAGCAGTAAGGTTATATGCATCAGTTGTCTGCATTAGTTGAGCAACTTGTTCATCACGAGTTGTTGTCAATACTGCACTGCCGATGCTACCATGTTGAAGGGAAGCCTTTAACTTTTCCCACTTATCGGCATCTCTGCTCCAAACGTCATCCAATACAAGGAGGTACCTTTGGCCGCTCACTAATTTTTGAAGCTTCTGCAGTGGCTTGTCCTTGGTCACTTGACTCACATGATAATCTATTTGGTGTTTGCCATCCTCTTTTACTTCCTTGCTCCTATCAGCTAGTTTAACTATATTTTCAGCAATAGAGTCAACATCAAAAGGGTCAGATACGCATACCCATACCAACAACTGGAAATGCTTCTGAATTTCACTGTCGTTGTAAACTAGTTGCGCTAATGTTGTCTTGCCCAGCCCCCCTATTCCAACTATAGGAAGAACCAAGAGATCCGGGCTGCTAGCTTGACCAAGGAGAATATTAACAATTTTCAGTTTTTCTTGGCTTCTTGATTTGCTAATAATGTTTGTTGGGTCAAAGATCTCAGAATCAGTTTGCCTCCACTGCATGGAAACTAAAGGCTGAGGTTGGAATCTGAACCTAAAGGCATTCATCTCCGTGACAAGGACTTCAATGTCATGCACAATCTTGCAAAGTCTTTTGTCCATCCTGTACCGGAACATGACACGGTTGTGAGTAGGAAAGAGTTTTACCACATCGAAGCCGAGCGCGGTGTAGTGCCCATTCTTCTTGGCTTCTCGCCAAAGAGCCTCATACTTGAACTCGTCGAAGATGTCATTTGCTTCGTAGGCCACCGTCTTGAGCTCCTCGAGCCAGGCTTTCGCTCCTTCTCTTTGTTCTGACGCCTGCTTCTCAGCGTCGGAGATGACGTCCAGGATGGCCGGCAGCTTGCGCTTCAGGATCTTGTGCTGCTCTTCCAAGCCCTCCATCACCCTGTACTCCTGTAGGAGGTAGCTGGAGACCTTATCCTTCACCATGGACAGCAGTGGCTTGACCACGATGCTGGTCACCACCTCCGCCATTTTTGCACGCTCGCAGCCAGAGGTACGCACAAGCAGAAGGATGAGGAGAGCAACCACACTTCGAATTGCAC
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| CDS seq | ATGGCGGAGGTGGTGACCAGCATCGTGGTCAAGCCACTGCTGTCCATGGTGAAGGATAAGGTCTCCAGCTACCTCCTACAGGAGTACAGGGTGATGGAGGGCTTGGAAGAGCAGCACAAGATCCTGAAGCGCAAGCTGCCGGCCATCCTGGACGTCATCTCCGACGCTGAGAAGCAGGCGTCAGAACAAAGAGAAGGAGCGAAAGCCTGGCTCGAGGAGCTCAAGACGGTGGCCTACGAAGCAAATGACATCTTCGACGAGTTCAAGTATGAGGCTCTTTGGCGAGAAGCCAAGAAGAATGGGCACTACACCGCGCTCGGCTTCGATGTGGTAAAACTCTTTCCTACTCACAACCGTGTCATGTTCCGGTACAGGATGGACAAAAGACTTTGCAAGATTGTGCATGACATTGAAGTCCTTGTCACGGAGATGAATGCCTTTAGGTTCAGATTCCAACCTCAGCCTTTAGTTTCCATGCAGTGGAGGCAAACTGATTCTGAGATCTTTGACCCAACAAACATTATTAGCAAATCAAGAAGCCAAGAAAAACTGAAAATTGTTAATATTCTCCTTGGTCAAGCTAGCAGCCCGGATCTCTTGGTTCTTCCTATAGTTGGAATAGGGGGGCTGGGCAAGACAACATTAGCGCAACTAGTTTACAACGACAGTGAAATTCAGAAGCATTTCCAGTTGTTGGTATGGGTATGCGTATCTGACCCTTTTGATGTTGACTCTATTGCTGAAAATATAGTTAAACTAGCTGATAGGAGCAAGGAAGTAAAAGAGGATGGCAAACACCAAATAGATTATCATGTGAGTCAAGTGACCAAGGACAAGCCACTGCAGAAGCTTCAAAAATTAGTGAGCGGCCAAAGGTACCTCCTTGTATTGGATGACGTTTGGAGCAGAGATGCCGATAAGTGGGAAAAGTTAAAGGCTTCCCTTCAACATGGTAGCATCGGCAGTGCAGTATTGACAACAACTCGTGATGAACAAGTTGCTCAACTAATGCAGACAACTGATGCATATAACCTTACTGCTCTGGAGAACAGCATTATCAAGGAAATCATTGACACGAGAGCATTTAGTTTGAGAAAGGATGAAAAGCCTAATGAGCAAGTTGAAATGATTGATAAGTTTGTCAACAGATGTGTTGGATCTCCATTAGCCGCAACAGCACTAGGCTCTCTACTTCGTACCAAGGAAACTGTGCAAGAATGGCAGGCCATATTAATGAGAAGCAGTATATGCAATGAGGAGACTGGAATTTTACATATACTCAAGCTCAGCTATGATGACTTGCCCTCATACATGAAACAATGCTTTGCTTTCTGTGCTATGTTTCCCAAAGATTATGTGATTGACGTAGACAATCTAATCCACGTATGGATGGCCAATGGCTTTATCCCAGACGAAAAAAAATGTCCCTCTAGAAACCATTGGAAACTATATTTTCCATGA
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| Protein seq | MAEVVTSIVVKPLLSMVKDKVSSYLLQEYRVMEGLEEQHKILKRKLPAILDVISDAEKQASEQREGAKAWLEELKTVAYEANDIFDEFKYEALWREAKKNGHYTALGFDVVKLFPTHNRVMFRYRMDKRLCKIVHDIEVLVTEMNAFRFRFQPQPLVSMQWRQTDSEIFDPTNIISKSRSQEKLKIVNILLGQASSPDLLVLPIVGIGGLGKTTLAQLVYNDSEIQKHFQLLVWVCVSDPFDVDSIAENIVKLADRSKEVKEDGKHQIDYHVSQVTKDKPLQKLQKLVSGQRYLLVLDDVWSRDADKWEKLKASLQHGSIGSAVLTTTRDEQVAQLMQTTDAYNLTALENSIIKEIIDTRAFSLRKDEKPNEQVEMIDKFVNRCVGSPLAATALGSLLRTKETVQEWQAILMRSSICNEETGILHILKLSYDDLPSYMKQCFAFCAMFPKDYVIDVDNLIHVWMANGFIPDEKKCPSRNHWKLYFP |
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| Function | Putative disease resistance protein RGA4 [UniProtKB/Swiss-Prot:Q7XA39] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0358700 | OsNip_01t0358700-01 | Chr01 | 14529887 | 14531604 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCGGAGGTGGTGACCAGCATCGTGGTCAAGCCACTGCTGTCCATGGTGAAGGATAAGGTCTCCAGCTACCTCCTACAGGAGTACAGGGTGATGGAGGGCTTGGAAGAGCAGCACAAGATCCTGAAGCGCAAGCTGCCGGCCATCCTGGACGTCATCTCCGACGCTGAGAAGCAGGCGTCAGAACAAAGAGAAGGAGCGAAAGCCTGGCTCGAGGAGCTCAAGACGGTGGCCTACGAAGCAAATGACATCTTCGACGAGTTCAAGTATGAGGCTCTTTGGCGAGAAGCCAAGAAGAATGGGCACTACACCGCGCTCGGCTTCGATGTGGTAAAACTCTTTCCTACTCACAACCGTGTCATGTTCCGGTACAGGATGGACAAAAGACTTTGCAAGATTGTGCATGACATTGAAGTCCTTGTCACGGAGATGAATGCCTTTAGGTTCAGATTCCAACCTCAGCCTTTAGTTTCCATGCAGTGGAGGCAAACTGATTCTGAGATCTTTGACCCAACAAACATTATTAGCAAATCAAGAAGCCAAGAAAAACTGAAAATTGTTAATATTCTCCTTGGTCAAGCTAGCAGCCCGGATCTCTTGGTTCTTCCTATAGTTGGAATAGGGGGGCTGGGCAAGACAACATTAGCGCAACTAGTTTACAACGACAGTGAAATTCAGAAGCATTTCCAGTTGTTGGTATGGGTATGCGTATCTGACCCTTTTGATGTTGACTCTATTGCTGAAAATATAGTTAAACTAGCTGATAGGAGCAAGGAAGTAAAAGAGGATGGCAAACACCAAATAGATTATCATGTGAGTCAAGTGACCAAGGACAAGCCACTGCAGAAGCTTCAAAAATTAGTGAGCGGCCAAAGGTACCTCCTTGTATTGGATGACGTTTGGAGCAGAGATGCCGATAAGTGGGAAAAGTTAAAGGCTTCCCTTCAACATGGTAGCATCGGCAGTGCAGTATTGACAACAACTCGTGATGAACAAGTTGCTCAACTAATGCAGACAACTGATGCATATAACCTTACTGCTCTGGAGAACAGCATTATCAAGGAAATCATTGACACGAGAGCATTTAGTTTGAGAAAGGATGAAAAGCCTAATGAGCAAGTTGAAATGATTGATAAGTTTGTCAACAGATGTGTTGGATCTCCATTAGCCGCAACAGCACTAGGCTCTCTACTTCGTACCAAGGAAACTGTGCAAGAATGGCAGGCCATATTAATGAGAAGCAGTATATGCAATGAGGAGACTGGAATTTTACATATACTCAAGCTCAGCTATGATGACTTGCCCTCATACATGAAACAATGCTTTGCTTTCTGTGCTATGTTTCCCAAAGATTATGTGATTGACGTAGACAATCTAATCCACGTATGGATGGCCAATGGCTTTATCCCAGACGAAAAAAAATGTCCCTCTAGAAACCATTGGAAACTATATTTTCCATGA
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| Protein seq | MAEVVTSIVVKPLLSMVKDKVSSYLLQEYRVMEGLEEQHKILKRKLPAILDVISDAEKQASEQREGAKAWLEELKTVAYEANDIFDEFKYEALWREAKKNGHYTALGFDVVKLFPTHNRVMFRYRMDKRLCKIVHDIEVLVTEMNAFRFRFQPQPLVSMQWRQTDSEIFDPTNIISKSRSQEKLKIVNILLGQASSPDLLVLPIVGIGGLGKTTLAQLVYNDSEIQKHFQLLVWVCVSDPFDVDSIAENIVKLADRSKEVKEDGKHQIDYHVSQVTKDKPLQKLQKLVSGQRYLLVLDDVWSRDADKWEKLKASLQHGSIGSAVLTTTRDEQVAQLMQTTDAYNLTALENSIIKEIIDTRAFSLRKDEKPNEQVEMIDKFVNRCVGSPLAATALGSLLRTKETVQEWQAILMRSSICNEETGILHILKLSYDDLPSYMKQCFAFCAMFPKDYVIDVDNLIHVWMANGFIPDEKKCPSRNHWKLYFP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0359400 | RBH | 3.238470 | 3.318137 | 7.733653 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g25630 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0358700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0016750 | SBH | 2.686067 | 8.307322 | 7.161385 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0016390 | RBH | 0.000000 | 0.564667 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0016640 | RBH | 3.956863 | 7.882003 | 12.720966 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0016110 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0016150 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0245700 | RBH | 0.043736 | 2.339651 | 0.010261 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0016210 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0242200 | SBH | 1.038508 | 2.7635785 | 3.2883595 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0016170 | SBH | 0.0 | 0.024738 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0016090 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0016340 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0016170 | SBH | 0.820173 | 0.367919 | 0.316204 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0015950 | RBH | 0.000000 | 0.187829 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G016380 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0016160 | RBH | 0.000000 | 0.0 | 0.0 |
