Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0336300 | OGI:01038990 | 1/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:13170682-13171929 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAGACAACAAGATAGCTACTTAATAAATTTTAAGTAAAATCATAAAAAAATATATATGATTTTGTTTGGGTGCTAGCCGCGCAATTGCGCACGCAACCCCAGCTAGTTAGATTGAACAACAAGCGAACTACTACCAGCTTATACTATGCAAAAACTACCAATACGGCAATTGATTCTACAACGCGGGAGCCACAGCCGACAGGAGACTTCACTCTAACAACCTACGAGATAATACGGCTTGGCGCCTCAGGCCTAGCGGTGATGCCGGCGTGCAGGAGCAGCGCCCAGAGCAGCGTGACGAACTCGCCGCCGCGCGCCATGGCCTCCACGTGCCCCTTGACGTTCTCCGACGGCGCGATGTACAGCATCATCTCCGACGAGAAATTCGCCAGGAACAGCCACGCCGACGCCTCGTCGTCCTCCTCGGCGGTCGTGTACTCTTCCGCAAGGCAGCGCGCGATCTCAGCGCCGCCACGCAGCACCTTGTCGCGCGCGCCGGCGCTCAGTGTCGCCACGAGCCGCTCGTACCTCTGCTGCGCCGTCGTCGTCTCACCGGCGGCGCCGTCCTTTGCGAGAGCCGCGGTGACGTCGGCCGTCAACTCCTTGTACCGCTTCTCGGTCCACGCGGCGCTGTCCAGCAGCAGCTCCGGCGCGGCCGACGCCAGGTACGCGCAGTAGTAGGAGAGGTGGCACGCGGCGGCCATGTCCGGTGATGATGGCGACGGCGTCGGAGAAGCGTGCAGCGAGCATCTCATCTCGTAGAGCCTCGTGGCGACGTGCCACGCGAGGATGATGTCGGTGGTGCTGACGCAGCCGTCGCCGTCGTCGCACGCCCAGCTCTTTCGGGAGCCATACCACAGCCAGTCGACCTTGCCGCCGACTCGCCGCTCCGCCGCGCTAACGCTTCCTCTGCTCGACCTGCCGTAGCTGCTCATCAAGGACCTGAGCACCGTGTCCTTCACCGCCGGCGAGACTTCCACCGACCTCATGAGCCCGGCGCGGCCGTAGAGCTTCTCGGAGAGAAGGCCGGACCGCCGGCAGAAGCGGCGGGGCTCCAGCACCGAGTTCTGCCCGATCTTGTTGCGCCACCGCCTCGCGGGCCTGAACCGCAGCATGGCGTCGAGCGCCGCGTGGGCGCGGCGACACCGACGCCACTGTGGCTCGTGCCTGATGTAGTGGCCGAGCAAGGCCATCTTACTCCAATTGGAGCACACGCCGGCGACGATGTCCCATACCTCGACGAGCGCC
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| CDS seq | GCGCTCGTCGAGGTATGGGACATCGTCGCCGGCGTGTGCTCCAATTGGAGTAAGATGGCCTTGCTCGGCCACTACATCAGGCACGAGCCACAGTGGCGTCGGTGTCGCCGCGCCCACGCGGCGCTCGACGCCATGCTGCGGTTCAGGCCCGCGAGGCGGTGGCGCAACAAGATCGGGCAGAACTCGGTGCTGGAGCCCCGCCGCTTCTGCCGGCGGTCCGGCCTTCTCTCCGAGAAGCTCTACGGCCGCGCCGGGCTCATGAGGTCGGTGGAAGTCTCGCCGGCGGTGAAGGACACGGTGCTCAGGTCCTTGATGAGCAGCTACGGCAGGTCGAGCAGAGGAAGCCGCGGCGGAGCGGCGAGTCGGCGGCAAGGTCGACTGGCTGTGGTATGGCTCCCGAAAGAGCTGGGCGTGCGACGACGGCGACGGCTGCGTCAGCACCACCGACATCATCCTCGCGTGGCACGTCGCCACGAGGCTCTACGAGATGAGATGCTCGCTGCACGCTTCTCCGACGCCGTCGCCATCATCACCGGACATGGCCGCCGCGTGCCACCTCTCCTACTACTGCGCGTACCTGGCGTCGGCCGCGCCGGAGCTGCTGCTGGACAGCGCCGCGTGGACCGAGAAGCGGTACAAGGAGTTGACGGCCGACGTCACCGCGGCTCTCGCAAAGGACGGCGCCGCCGGTGA
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| Protein seq | ALVEVWDIVAGVCSNWSKMALLGHYIRHEPQWRRCRRAHAALDAMLRFRPARRWRNKIGQNSVLEPRRFCRRSGLLSEKLYGRAGLMRSVEVSPAVKDTVLRSLMSSYGRSSRGSRGGAASRRQGRLAVVWLPKELGVRRRRRLRQHHRHHPRVARRHEALRDEMLAARFSDAVAIITGHGRRVPPLLLLRVPGVGRAGAAAGQRRVDREAVQGVDGRRHRGSRKGRRRR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0336300 | OsNip_01t0336300-00 | Chr01 | 13170797 | 13171929 | - | RAP2018-11-26 | ||
| CDS seq | GCGCTCGTCGAGGTATGGGACATCGTCGCCGGCGTGTGCTCCAATTGGAGTAAGATGGCCTTGCTCGGCCACTACATCAGGCACGAGCCACAGTGGCGTCGGTGTCGCCGCGCCCACGCGGCGCTCGACGCCATGCTGCGGTTCAGGCCCGCGAGGCGGTGGCGCAACAAGATCGGGCAGAACTCGGTGCTGGAGCCCCGCCGCTTCTGCCGGCGGTCCGGCCTTCTCTCCGAGAAGCTCTACGGCCGCGCCGGGCTCATGAGGTCGGTGGAAGTCTCGCCGGCGGTGAAGGACACGGTGCTCAGGTCCTTGATGAGCAGCTACGGCAGGTCGAGCAGAGGAAGCCGCGGCGGAGCGGCGAGTCGGCGGCAAGGTCGACTGGCTGTGGTATGGCTCCCGAAAGAGCTGGGCGTGCGACGACGGCGACGGCTGCGTCAGCACCACCGACATCATCCTCGCGTGGCACGTCGCCACGAGGCTCTACGAGATGAGATGCTCGCTGCACGCTTCTCCGACGCCGTCGCCATCATCACCGGACATGGCCGCCGCGTGCCACCTCTCCTACTACTGCGCGTACCTGGCGTCGGCCGCGCCGGAGCTGCTGCTGGACAGCGCCGCGTGGACCGAGAAGCGGTACAAGGAGTTGACGGCCGACGTCACCGCGGCTCTCGCAAAGGACGGCGCCGCCGGTGA
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| Protein seq | ALVEVWDIVAGVCSNWSKMALLGHYIRHEPQWRRCRRAHAALDAMLRFRPARRWRNKIGQNSVLEPRRFCRRSGLLSEKLYGRAGLMRSVEVSPAVKDTVLRSLMSSYGRSSRGSRGGAASRRQGRLAVVWLPKELGVRRRRRLRQHHRHHPRVARRHEALRDEMLAARFSDAVAIITGHGRRVPPLLLLRVPGVGRAGAAAGQRRVDREAVQGVDGRRHRGSRKGRRRR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0336300 | OsNip_01t0336300-01 | Chr01 | 13170682 | 13171888 | - | IsoSeq | ||
| CDS seq | CCAATTGGAGTAAGATGGCCTTGCTCGGCCACTACATCAGGCACGAGCCACAGTGGCGTCGGTGTCGCCGCGCCCACGCGGCGCTCGACGCCATGCTGCGGTTCAGGCCCGCGAGGCGGTGGCGCAACAAGATCGGGCAGAACTCGGTGCTGGAGCCCCGCCGCTTCTGCCGGCGGTCCGGCCTTCTCTCCGAGAAGCTCTACGGCCGCGCCGGGC
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| Protein seq | PIGVRWPCSATTSGTSHSGVGVAAPTRRSTPCCGSGPRGGGATRSGRTRCWSPAASAGGPAFSPRSSTAAPG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 1.836412 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0335600 | RBH | 0.0 | 0.0 | 0.478521 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g23070 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0336300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0015470 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0015230 | SBH | 0.0 | 0.0 | 1.656345 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0015480 | SBH | 0.0 | 0.0 | 0.381739 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0014930 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0014980 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0215700 | SBH | 0.012476 | 0.075286 | 0.0220775 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0014880 | SBH | 0.0 | 0.0 | 0.311324 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0212000 | SBH | 0.0155685 | 0.0382135 | 0.0387935 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0014880 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0015130 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0014880 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0014990 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0014690 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G015080 | SBH | 0.0 | 0.0 | 0.450563 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0014900 | SBH | 0.0 | 0.0 | 0.335720 |
