Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsIR64_01g0014880 OGI:01038920 | 14/16 IR 64 | OsIR64RS1 | Gramene(+IsoSeq) Chr01:13014717-13018685
Gene Symbol OsSTA13
DNA seq

ATGGCGTCCACTGAAACTATCAAAGAATTCTTCAACGTCAATGGCCAGATAATCGGCGCCGCCGTGCTTGCCGTGCTCGCTACGGTAGTGGTGGCGCTCGGCACGTACGGCCGTCATTGCAGCCACCCGGCGCTCCGCCTCTTCGTGTGGGGCGCCTCCACCGTCTTCCTCCTGCTCTCCACCTCCATCATCTCCAATTTGCTCAAGGGGGTCCAGGGGGACAAGTGCAGCAATGCCTCTCCCCAAGCTTCCGGTGGCGTCCAGCAGAAGGACAAGCCGGATATTAGGAAGATGTGGATAATCCTCCTGTGGTCGGCACTCATCCTCATCATCAAGGGCAAGTCCGACACGTCGGCGACCGCCCGTTAACATGGCCTCGTTGTCGCCGTCGTCCGGCGACGTTAGCGTCGACGGGCAGAAGGTCCGGCCGCCGCTGGAGTATCTGCTGAAGTACATATGGCTGATCTATCTGATTGTGGTGTGCTATCCACTGGAGGACTGGGTGGGCACTACCAGGAGGAACATCTTCGTCGCGTTCTGCATGCTCGGCCTCGCCAAGTTGCTGCTCAACCTGTTCGCGTCATGGCGGGCGAGCAGCTCGTTCGCCGTTGGCAAGAACGCCCGGCTTGTCTCCGGCTACATGGAGCAGCTCGAGGAAGAGGGCGACGAGGTCGGCGGCCATGACCAGGTGTCCCGTTACATAGTGACGGGGGAGAAGGAGGAGCACGTCGCCACGGGCGCCCGCGGATACCGCATCAGGCGGGACGCCCTGGACGATGAGTCCAGCAGCCTCGTGACGCTGGACCGCGTGTGGCGGATGGCGGAGCACGGCGATGTCAACGGCCTCCTCGCCAAGCGGCCCGAGCTCAGGGACCTCTGCCTCTCCTTCTCCCTGTTCAAGAGCCTTCGCCGGCGGCTGTCAGGCTATCCCATGGACGACGCGGGCTCTACCAAGGCCCTTGAGTTCGTGCTGCGAGGCATGAACGCCGCCGGCTCTGCCTGTGCCGTCAACGCCGACCGAGTGTTCCATGTTCTCGTCGACGAGCTCTCGTTTGCCAGCGACTTCTACTTCCTTGGGCTTCCGCTGTGCACTTACAGCGGGTGGTGCGCCGCCCTGAACTACATCTTCTCCGTCCTAATCGTTGTCGGAGCCACCGCCGTGGGAACAATATATAAAGTGGAAAAGGTGATCATATTCTAAGAAGTGCTAAAGAGACACCCTTCTTAAAAAAAAAAAGCTACTAGTACACACAATATCTATATATTTTTTTTCTTCTTAGAGAAGTTTCTCTTAAATTACTCATCCGATTTATAATCCGATTACACCGTTGTGTTCGTAACAATTAAATCTTTACAACAAGATCTTACATGATTATATTTTGATAAAAAATCACAAATAACTTTTATGATATGTCTAAATTACTTCTAGATTTCACTAAGTTACTTCTTATATATATAAAAGTAAATTCAGTAAACCTTAAAAGTAATTTACATATATTATAGAAGTAACTTATAACAAAAAGTAAGTAACATTAATTTAGAACTATATCTAGATTCATTTACATCTATATAAATAAGGGCAATGCTAAAATGACTTACATTATGAAACGGGGGGAGTAACTATCTGTAGTAGAAATAATTATATTGTGAGTGAGCTGAAATAAGAAACTACGTAGAGTACAATTTGCAAGTAAAGTGTAGAGAAGATTTATAAAGTCCACAAAATATAGAATTAACTAAAAATAATAATAAAAATAATCAACTTAGAGCATTATGAATGTATAAAAGTAATTTAGTCAAATCTAAAAGTAACATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACATATATACACACATATATATACATATATATACATATACACATATACATATACACATATACATATATACATATATACATATACATATACATACATATATACATATACATATATACATATACATATATACATATATACATATATACATATATACATATACATATATAACATATATATATATACATATATACATACATATATATATATATATATATATATATATATATGTATGATAAAAGTAACTTACGTATATAGAATTAACTAAAAATAATAATAAAAATAATCAACTTAGAGCATTATGAATGTATAAAAGTAATTTAGTCAAATCTAAAAGTAACATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACACACACACATATATATACATATATATACATATACACATATACATATACACATATACATATATACATATATATATATACATATACATACATATATACATATACATATATACATATATACATATACATATATACATATATATATATATACATATATACATACATATATATATATATATATATATGTATGATAAAAGTAACTTACGTATATAATTAAAGTAATTTATAAATATAAATAATTTTTTCATCGTAATATAATCATGTAAGATCTTGTTGTAAATATTTAATTGCAACGAATGTAATGGTGTAATCAGATTGTAGATTGGGTAAGTAATTTGAGAGAAAACTTTATAAGAAGAAAGAAAAAGACATGCATATCTAAGAGGGAAAAAAGCATGCGCGTGTAGTAGTACTTCTTCTCATAATTGGTTGGTCGCTAGTTAACACTAAATCGAGAGGCTTCTCGGTTTAGATTTTGCCATTCAAAGAAGGGAAGCCTAACTTTGTCGTCACGTTCGCCCTCCTGGTGGCGGTGGCGCTCGTCGAGGTATGGGACATCGTCGCCGGCGTGTGCTCCAATTGGAGTAAGATGGCCTTGCTCGGCCACTACATCAGGCACGAGCCACAGTGGCGTCGGTGTCGCCGCGCCCACGCGGCGCTCGACGCCGTGCTGCGGTTCAGGCCCGCGAGGCGGTGGCGCAACAAGATCGGGCAGAACTCGGTGCTGGAGCCCCGCCGCTTCTGCCGGCGGTCCGGCCTCCTCTCCGAGAAGCTCTACGGCCGCGCCGGGCTCATGAGGTCGGTGGAAGTCTCGCCGGCGGTGAAGGACGCGGTTCTCAGGTCCTTGATGAGCAGCTACGGCAGGTCGAGCAGAGGACGCGCGGCGGAGCGGCGAGTCGGCAGCAAGGTCGACTGGCTGTGGTACGGCTCCCGAAAGAGCTGGGCGTCCGACGACGGCGACGGCTGCGTCAGCACCACCGACATCATCCTCGCGTGGCACGTCGCCACGAGGCTCTACGAGATGAGATGCTCGCTGCACGCTTCGTCTCCGACGCCGTCGGCATCATCGTCGGACATGGCCGCCGCGTGCCACCTCTCCAACTACTGCGCGTACCTGGCGTCGGCCGCGCCGGAGCTGCTGCCGGACATCGCCACGTGGACCGAGAAACGGTACAGGGAGGTGACGGCCGACGTCACCGCGGGCGCTGGGCAAGGACAGCGCCGCCGGTGAGACGACGACGGCGCAGCAGAGGTACGAGCGGCTCGTGGCGACGCTGAGCGCCGGCGCGCGCGACAAGGCGCTGCGTCGCGGCACGGAGATCGCGCGCCGCCTTGCGGAGGAGTACACGACCGCCGCCGAGGACGACGACGAGGCGTCGGCGTGGCTGTTCCTGGCGGATTTCTGGTCGGAGATGATGCTCTACGTGGCGCCGTCGGAGAACATCAAGGGGCACGTGGAGGCCATGGCGCGCGGCGGCGAGTTCGTCACGCTGCTCTGGGCGCTGCTCCTGCACGCCGGCATCACCGCTAGGCCTGAGGCGCCAAGCCGTATTATCCCGTAGGTTGTTACAGTGAAGTCTCCTGTCGGCTGTGGCCCCCGCGTTGTAGAATCAATTGCCGTATTGGTAGTTTTTGCATAGTATAAGCTGGTAGTAGTTCGCTTGT

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CDS seq

ATGGCGTCCACTGAAACTATCAAAGAATTCTTCAACGTCAATGGCCAGATAATCGGCGCCGCCGTGCTTGCCGTGCTCGCTACGGTAGTGGTGGCGCTCGGCACGTACGGCCGTCATTGCAGCCACCCGGCGCTCCGCCTCTTCGTGTGGGGCGCCTCCACCGTCTTCCTCCTGCTCTCCACCTCCATCATCTCCAATTTGCTCAAGGGGGTCCAGGGGGACAAGTGCAGCAATGCCTCTCCCCAAGCTTCCGGTGGCGTCCAGCAGAAGGACAAGCCGGATATTAGGAAGATGTGGATAATCCTCCTGTGGTCGGCACTCATCCTCATCATCAAGGGCAAGTCCGACACGAGGAACATCTTCGTCGCGTTCTGCATGCTCGGCCTCGCCAAGTTGCTGCTCAACCTGTTCGCGTCATGGCGGGCGAGCAGCTCGTTCGCCGTTGGCAAGAACGCCCGGCTTGTCTCCGGCTACATGGAGCAGCTCGAGGAAGAGGGCGACGAGGTCGGCGGCCATGACCAGGTGTCCCGTTACATAGTGACGGGGGAGAAGGAGGAGCACGTCGCCACGGGCGCCCGCGGATACCGCATCAGGCGGGACGCCCTGGACGATGAGTCCAGCAGCCTCGTGACGCTGGACCGCGTGTGGCGGATGGCGGAGCACGGCGATGTCAACGGCCTCCTCGCCAAGCGGCCCGAGCTCAGGGACCTCTGCCTCTCCTTCTCCCTGTTCAAGAGCCTTCGCCGGCGGCTGTCAGGCTATCCCATGGACGACGCGGGCTCTACCAAGGCCCTTGAGTTCGTGCTGCGAGGCATGAACGCCGCCGGCTCTGCCTGTGCCGTCAACGCCGACCGAGTGTTCCATGTTCTCGTCGACGAGCTCTCGTTTGCCAGCGACTTCTACTTCCTTGGGCTTCCGCTGTGCACTTACAGCGGGTGGTGCGCCGCCCTGAACTACATCTTCTCCGTCCTAATCGTTGTCGGAGCCACCGCCGTGGGAACAATATATAAAGTGGAAAAGATTTTGCCATTCAAAGAAGGGAAGCCTAACTTTGTCGTCACGTTCGCCCTCCTGGTGGCGGTGGCGCTCGTCGAGGTATGGGACATCGTCGCCGGCGTGTGCTCCAATTGGAGTAAGATGGCCTTGCTCGGCCACTACATCAGGCACGAGCCACAGTGGCGTCGGTGTCGCCGCGCCCACGCGGCGCTCGACGCCGTGCTGCGGTTCAGGCCCGCGAGGCGGTGGCGCAACAAGATCGGGCAGAACTCGGTGCTGGAGCCCCGCCGCTTCTGCCGGCGGTCCGGCCTCCTCTCCGAGAAGCTCTACGGCCGCGCCGGGCTCATGAGGTCGGTGGAAGTCTCGCCGGCGGTGAAGGACGCGGTTCTCAGGTCCTTGATGAGCAGCTACGGCAGGTCGAGCAGAGGACGCGCGGCGGAGCGGCGAGTCGGCAGCAAGGTCGACTGGCTGTGGTACGGCTCCCGAAAGAGCTGGGCGTCCGACGACGGCGACGGCTGCGTCAGCACCACCGACATCATCCTCGCGTGGCACGTCGCCACGAGGCTCTACGAGATGAGATGCTCGCTGCACGCTTCGTCTCCGACGCCGTCGGCATCATCGTCGGACATGGCCGCCGCGTGCCACCTCTCCAACTACTGCGCGTACCTGGCGTCGGCCGCGCCGGAGCTGCTGCCGGACATCGCCACGTGGACCGAGAAACGGTACAGGGAGCAGAGGTACGAGCGGCTCGTGGCGACGCTGAGCGCCGGCGCGCGCGACAAGGCGCTGCGTCGCGGCACGGAGATCGCGCGCCGCCTTGCGGAGGAGTACACGACCGCCGCCGAGGACGACGACGAGGCGTCGGCGTGGCTGTTCCTGGCGGATTTCTGGTCGGAGATGATGCTCTACGTGGCGCCGTCGGAGAACATCAAGGGGCACGTGGAGGCCATGGCGCGCGGCGGCGAGTTCGTCACGCTGCTCTGGGCGCTGCTCCTGCACGCCGGCATCACCGCTAGGCCTGAGGCGCCAAGCCGTATTATCCCGTAG

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Protein seq

MASTETIKEFFNVNGQIIGAAVLAVLATVVVALGTYGRHCSHPALRLFVWGASTVFLLLSTSIISNLLKGVQGDKCSNASPQASGGVQQKDKPDIRKMWIILLWSALILIIKGKSDTRNIFVAFCMLGLAKLLLNLFASWRASSSFAVGKNARLVSGYMEQLEEEGDEVGGHDQVSRYIVTGEKEEHVATGARGYRIRRDALDDESSSLVTLDRVWRMAEHGDVNGLLAKRPELRDLCLSFSLFKSLRRRLSGYPMDDAGSTKALEFVLRGMNAAGSACAVNADRVFHVLVDELSFASDFYFLGLPLCTYSGWCAALNYIFSVLIVVGATAVGTIYKVEKILPFKEGKPNFVVTFALLVAVALVEVWDIVAGVCSNWSKMALLGHYIRHEPQWRRCRRAHAALDAVLRFRPARRWRNKIGQNSVLEPRRFCRRSGLLSEKLYGRAGLMRSVEVSPAVKDAVLRSLMSSYGRSSRGRAAERRVGSKVDWLWYGSRKSWASDDGDGCVSTTDIILAWHVATRLYEMRCSLHASSPTPSASSSDMAAACHLSNYCAYLASAAPELLPDIATWTEKRYREQRYERLVATLSAGARDKALRRGTEIARRLAEEYTTAAEDDDEASAWLFLADFWSEMMLYVAPSENIKGHVEAMARGGEFVTLLWALLLHAGITARPEAPSRIIP

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsIR64_01g0014880 OsIR64_01g0014880.01 Chr01 13014717 13018582 + NAM
CDS seq

ATGGCGTCCACTGAAACTATCAAAGAATTCTTCAACGTCAATGGCCAGATAATCGGCGCCGCCGTGCTTGCCGTGCTCGCTACGGTAGTGGTGGCGCTCGGCACGTACGGCCGTCATTGCAGCCACCCGGCGCTCCGCCTCTTCGTGTGGGGCGCCTCCACCGTCTTCCTCCTGCTCTCCACCTCCATCATCTCCAATTTGCTCAAGGGGGTCCAGGGGGACAAGTGCAGCAATGCCTCTCCCCAAGCTTCCGGTGGCGTCCAGCAGAAGGACAAGCCGGATATTAGGAAGATGTGGATAATCCTCCTGTGGTCGGCACTCATCCTCATCATCAAGGGCAAGTCCGACACGAGGAACATCTTCGTCGCGTTCTGCATGCTCGGCCTCGCCAAGTTGCTGCTCAACCTGTTCGCGTCATGGCGGGCGAGCAGCTCGTTCGCCGTTGGCAAGAACGCCCGGCTTGTCTCCGGCTACATGGAGCAGCTCGAGGAAGAGGGCGACGAGGTCGGCGGCCATGACCAGGTGTCCCGTTACATAGTGACGGGGGAGAAGGAGGAGCACGTCGCCACGGGCGCCCGCGGATACCGCATCAGGCGGGACGCCCTGGACGATGAGTCCAGCAGCCTCGTGACGCTGGACCGCGTGTGGCGGATGGCGGAGCACGGCGATGTCAACGGCCTCCTCGCCAAGCGGCCCGAGCTCAGGGACCTCTGCCTCTCCTTCTCCCTGTTCAAGAGCCTTCGCCGGCGGCTGTCAGGCTATCCCATGGACGACGCGGGCTCTACCAAGGCCCTTGAGTTCGTGCTGCGAGGCATGAACGCCGCCGGCTCTGCCTGTGCCGTCAACGCCGACCGAGTGTTCCATGTTCTCGTCGACGAGCTCTCGTTTGCCAGCGACTTCTACTTCCTTGGGCTTCCGCTGTGCACTTACAGCGGGTGGTGCGCCGCCCTGAACTACATCTTCTCCGTCCTAATCGTTGTCGGAGCCACCGCCGTGGGAACAATATATAAAGTGGAAAAGATTTTGCCATTCAAAGAAGGGAAGCCTAACTTTGTCGTCACGTTCGCCCTCCTGGTGGCGGTGGCGCTCGTCGAGGTATGGGACATCGTCGCCGGCGTGTGCTCCAATTGGAGTAAGATGGCCTTGCTCGGCCACTACATCAGGCACGAGCCACAGTGGCGTCGGTGTCGCCGCGCCCACGCGGCGCTCGACGCCGTGCTGCGGTTCAGGCCCGCGAGGCGGTGGCGCAACAAGATCGGGCAGAACTCGGTGCTGGAGCCCCGCCGCTTCTGCCGGCGGTCCGGCCTCCTCTCCGAGAAGCTCTACGGCCGCGCCGGGCTCATGAGGTCGGTGGAAGTCTCGCCGGCGGTGAAGGACGCGGTTCTCAGGTCCTTGATGAGCAGCTACGGCAGGTCGAGCAGAGGACGCGCGGCGGAGCGGCGAGTCGGCAGCAAGGTCGACTGGCTGTGGTACGGCTCCCGAAAGAGCTGGGCGTCCGACGACGGCGACGGCTGCGTCAGCACCACCGACATCATCCTCGCGTGGCACGTCGCCACGAGGCTCTACGAGATGAGATGCTCGCTGCACGCTTCGTCTCCGACGCCGTCGGCATCATCGTCGGACATGGCCGCCGCGTGCCACCTCTCCAACTACTGCGCGTACCTGGCGTCGGCCGCGCCGGAGCTGCTGCCGGACATCGCCACGTGGACCGAGAAACGGTACAGGGAGCAGAGGTACGAGCGGCTCGTGGCGACGCTGAGCGCCGGCGCGCGCGACAAGGCGCTGCGTCGCGGCACGGAGATCGCGCGCCGCCTTGCGGAGGAGTACACGACCGCCGCCGAGGACGACGACGAGGCGTCGGCGTGGCTGTTCCTGGCGGATTTCTGGTCGGAGATGATGCTCTACGTGGCGCCGTCGGAGAACATCAAGGGGCACGTGGAGGCCATGGCGCGCGGCGGCGAGTTCGTCACGCTGCTCTGGGCGCTGCTCCTGCACGCCGGCATCACCGCTAGGCCTGAGGCGCCAAGCCGTATTATCCCGTAG

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Protein seq

MASTETIKEFFNVNGQIIGAAVLAVLATVVVALGTYGRHCSHPALRLFVWGASTVFLLLSTSIISNLLKGVQGDKCSNASPQASGGVQQKDKPDIRKMWIILLWSALILIIKGKSDTRNIFVAFCMLGLAKLLLNLFASWRASSSFAVGKNARLVSGYMEQLEEEGDEVGGHDQVSRYIVTGEKEEHVATGARGYRIRRDALDDESSSLVTLDRVWRMAEHGDVNGLLAKRPELRDLCLSFSLFKSLRRRLSGYPMDDAGSTKALEFVLRGMNAAGSACAVNADRVFHVLVDELSFASDFYFLGLPLCTYSGWCAALNYIFSVLIVVGATAVGTIYKVEKILPFKEGKPNFVVTFALLVAVALVEVWDIVAGVCSNWSKMALLGHYIRHEPQWRRCRRAHAALDAVLRFRPARRWRNKIGQNSVLEPRRFCRRSGLLSEKLYGRAGLMRSVEVSPAVKDAVLRSLMSSYGRSSRGRAAERRVGSKVDWLWYGSRKSWASDDGDGCVSTTDIILAWHVATRLYEMRCSLHASSPTPSASSSDMAAACHLSNYCAYLASAAPELLPDIATWTEKRYREQRYERLVATLSAGARDKALRRGTEIARRLAEEYTTAAEDDDEASAWLFLADFWSEMMLYVAPSENIKGHVEAMARGGEFVTLLWALLLHAGITARPEAPSRIIP

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Gene Transcript Chromosome Start End Strand Source
OsIR64_01g0014880 OsIR64_01g0014880.02 Chr01 13017501 13018685 + IsoSeq
CDS seq

TCAAAGAAGGGAAGCCTAACTTTGTCGTCACGTTCGCCCTCCTGGTGGCGGTGGCGCTCGTCGAGGTATGGGACATCGTCGCCGGCGTGTGCTCCAATTGGAGTAAGATGGCCTTGCTCGGCCACTACATCAGGCACGAGCCACAGTGGCGTCGGTGTCGCCGCGCCCACGCGGCGCTCGACGCCGTGCTGCGGTTCAGGCCCGCGAGGCGGTGGCGCAACAAGATCGGGCAGAACTCGGTGCTGGAGCCCCGCCGCTTCTGCCGGCGGTCCGGCCTCCTCTCCGAGAAGCTCTACGGCCGCGCCGGGC

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Protein seq

SKKGSLTLSSRSPSWWRWRSSRYGTSSPACAPIGVRWPCSATTSGTSHSGVGVAAPTRRSTPCCGSGPRGGGATRSGRTRCWSPAASAGGPASSPRSSTAAPG

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.311324

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0335600 RBH 0.0 0.0 0.478521
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g23370 RBH 0.0 0.0 0.000000
Nipponbare | IRGSP 1.0 | RAP-db Os01g0335600 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0015420 RBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0015240 RBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0015490 RBH 0.0 0.0 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0014930 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0014980 RBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0215700 RBH 0.012476 0.075286 0.0220775
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0211900 RBH 0.015925 0 0.031487
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0014880 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_01g0015140 SBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_01g0014880 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0014990 RBH 0.0 0.0 0.000000
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_01g0014690 SBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G015080 RBH 0.0 0.0 0.450563
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0014900 RBH 0.0 0.0 0.335720
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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