Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0227500 | OGI:01021950 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:7053100-7056373 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAGTACACTCGTTCAGACATGGAGCTCTCGTCGCTTGCTGCTCTGTTGCACTCACCCCTCCTCCTTGCCGTGCTCCTGCTCGTCTTCTCATGGCTGATCGTCTCGTCGACCAAGAAGAGGCCTCCTCCGCCCTGCGGCGATGGCGGCCGGCGGCTGCCGCTGCCACCGTCGCCGCCGGGTGTCCCGCTACTCGGGCACCTCCCGCTTCTTGGCACCTTGCCGCACCGGAAGCTCCGGTCGATGGCCGAGGCGCACGGCCCGGTGATGCTGCTGCGGCTCGGCCGCGTGCCCGCCGTCGTGGCGTCGTCGGCGGCCGCGGCTGAGGAGGTGATGAGGACCCGGGACCTGGCGTTCGCGAGCCGGCCCAGGGTGCGCATGTCGGAGCGGCTCTTCTACGGCCGCGACATGGCGTTCGCGCCCTACGGCGAGTTCTGGCGCCAGGCGCGCCGCGTCACCGTGCTCCACCTCCTCAGCCCGCGCCGCGTCCTCTCCTTCCGCGGCGTCCGGGAGCAGGAGGTCGCCGCGCTGCTGGACCGCGTCCGGCGCCGCTGCGGCGGCGGCGGCGAGACCGTGAACCTGAGCGACCTGCTCATGTCCTACGCCCACGGCGTCATCTCCCGGGCGGCGTTCGGCCACGGCGGCGCGCACGGGTTCGACGGCGACGAGGGGGGAGAGAAGCTGAGGAAGCTGTTCGCCGACTTCGAGGGGCTTCTCGGGACGATGACGGTGGGGGAGTTCGTGCCATGGCTGGCGTGGGTGGACAAGCTGACGGGCCTTGACGCCAAGGTGGCGCGCACGTCGGCGGCGATGGACGGCTTGCTGGAGCGTGTCATCGCGGACCACCGCGAGCGGCGGCGCAGCCGCGGCCAGGCGGTCGGCGACGGCGAGGCGGACGCTGATCACCGGGACTTCGTGGACGTGATGCTGGACGTGAGCGAGGCGGAGGAGGGCGCCGGCGCCGGCGCCGGAGGAGTGCTGTTCGACACTGTCGCCATCAAGGCCGTTATCCTGGTACGTACTCCACTTGTTGTGGTACTACTCACTTGCAGATCAGCAGATGCAACCGTTGATTACTTCCTTTGGAATCAAACATAAATAATTTAATATTTTCAAGAAAATATTAATGAAAATTGCCTATCTTTTTTTCAGTCCAGTAAGAATAAATACTAGTTTAAGACATTTTTTTATTGTTTAGAATGAGTTAAGATTCGTGCAGCTACAAACCTTTATTGTTCCTCTCTCTCTGTACGACGCGATTTCGCCACACCGTCGGATCATGAGCCTATCCCCAACCCACCACCACCCTCCAACCTAAACTGACCGGAACGAGGTGTCCCTGCTCGTCAGTTTTATTATACCGGTTACTCATACAGCAGCAGATGCCATGGCCGCTCTACTTTTCAACCACTCTAGATCCCACGCTCTCACCGCTAACGCCTGACTTTGTCCACCAGCCTAGCCCTCTTGCCCATAGGTTCATGATCCAACCGTTGTTGTGAACATAGAAAAAAAGATCCTCTAAAATATTGCCCTCTAACTTTGTAGGTCTTACATTGAGCGGGTCCATATGCATAATTGCATATGCATGTGACCCACTACAAAAGAGTCATATGTGCACACCATAGTCCTTTCGGCTGCCCACCACCGGTCCATCGTGTCTTCGCCCATACGCTGGGAGAAAAACCCCTTCTCCACTAGGCTAGTGTCATCGTCACATACTTGTAGTCTGCTAAGCGTGAAGAAAACCTCTTTTCACCCTTACCCCAAAACTCCTGGTCGGCATCATGTCGTTGTTGGAGAAGTGTAAAAGGACACCACTGCTGGGCCGGGAAGAAGACCGAGATCACAAATCTCATGTTAATTTCTTCTCATCCACCCAAAGCTCTAAGCAAACGTCGCTTTCTAGATATTTATACACCTCATTTTCTAGATTTTTATTCATAGAGAGCTATATCTAACACCAAGTCATGCCATTGGATTTGCTTTTTTTCAAAATTAGTGATCTGTGCTGAATATATGCCATCTCAATTTTCTCTGTCACTACTACACAACACTTAATTTTTCATGAAAAATTCCAAGCAATATGATATATACATGCACAGCTAAACATGCCTACTCCCTCTGTTTCATAATATAAGTCTTTTGAACCTTTTTAAGTCACACTTAGTTAAGTTTGATTAAGTTTATAGAAAAAATTAACAATATCTAAAATATGAAATTAGTTTTATTAAATATAGTTTGATAATATGTTTATTTTATGTTAAAAATACTAGTATATTTTTTAATTAATTTGGTCAAACTCAACAAAGTTTGATTAGGAAAAAAGAGGAACGACTTATATATGAAACAGAGAAAGTACCACGTGTGACATGCATGAATGAGAGGTTCATCGAGCAGGACATGATGGCCGCCGGCACAGACTCCAGCTTCACCACCACGGAATGGGTCATGGCGGAGCTCATCAACCATCCACGCGTGATGCGCAAGCTGCAGGATGAGATTCGCGCGGTCGTGGGCACATCGAGTGCATCCGCCGCCGCCGCCGCCACCGGCGGCGGCCAAGTCACCGAGGACCACCTCGGCGAGCTGCCCTTCCTCAGGGCCGTGATCAAGGAGATGCTCCGGCTGCACGCGCCGGGGCCGCTTCTCCTCCCCCGCGAGACGGTGGAGGACACGGAGCTGCTGGGCTACCGCATCCCGGCGCGCACGCGGGTGATCATCAACGTGTGGGCCATCGGCCGCGACGCGGCGGCGTGGGGTGATTCCGCGGAGGAGTTCGTGCCGGAGCGGTGGCTCGATGGCGGCGGCGGTGGCGGCGTGGAGTACGCGCAGCAGCTGGGGAAGGACTCCAGGTTTGTGCCGTTCGGCGCCGGGAGGAGAGGCTGCCCCGGCGCCGGGTTCGCCGCGCTGAGCGTCGAGCTGGCGCTCGCCAACCTGCTGTACCACTTCGACTGGGAGTTGCCACCGCCGGCGGCCAGCGGGATCATGGCGACGACGAGATTGGACATGGACGAGCTGTTCGGATTGTCCGTGCGTCTCAAGGCGGATCTGAATCTAGTTGCCAAGCCGTGGTCTCCTGGAGCATCTTAATTAATTTCTCTGTATACTATATCTCATTATAAATTTATTATGTTTTCTATGTGTTTCAAACTTTCATTTGTGTGACTGCGTTGATGCTGCTTATGTATGTATGTATGTATGTATGTATATGAGTTTGCACAGTGAATGTTTTTGTTTTATAAGTAAAGGAATAGATTTATTCCAATCTCTGCAT
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| CDS seq | ATGGAGCTCTCGTCGCTTGCTGCTCTGTTGCACTCACCCCTCCTCCTTGCCGTGCTCCTGCTCGTCTTCTCATGGCTGATCGTCTCGTCGACCAAGAAGAGGCCTCCTCCGCCCTGCGGCGATGGCGGCCGGCGGCTGCCGCTGCCACCGTCGCCGCCGGGTGTCCCGCTACTCGGGCACCTCCCGCTTCTTGGCACCTTGCCGCACCGGAAGCTCCGGTCGATGGCCGAGGCGCACGGCCCGGTGATGCTGCTGCGGCTCGGCCGCGTGCCCGCCGTCGTGGCGTCGTCGGCGGCCGCGGCTGAGGAGGTGATGAGGACCCGGGACCTGGCGTTCGCGAGCCGGCCCAGGGTGCGCATGTCGGAGCGGCTCTTCTACGGCCGCGACATGGCGTTCGCGCCCTACGGCGAGTTCTGGCGCCAGGCGCGCCGCGTCACCGTGCTCCACCTCCTCAGCCCGCGCCGCGTCCTCTCCTTCCGCGGCGTCCGGGAGCAGGAGGTCGCCGCGCTGCTGGACCGCGTCCGGCGCCGCTGCGGCGGCGGCGGCGAGACCGTGAACCTGAGCGACCTGCTCATGTCCTACGCCCACGGCGTCATCTCCCGGGCGGCGTTCGGCCACGGCGGCGCGCACGGGTTCGACGGCGACGAGGGGGGAGAGAAGCTGAGGAAGCTGTTCGCCGACTTCGAGGGGCTTCTCGGGACGATGACGGTGGGGGAGTTCGTGCCATGGCTGGCGTGGGTGGACAAGCTGACGGGCCTTGACGCCAAGGTGGCGCGCACGTCGGCGGCGATGGACGGCTTGCTGGAGCGTGTCATCGCGGACCACCGCGAGCGGCGGCGCAGCCGCGGCCAGGCGGTCGGCGACGGCGAGGCGGACGCTGATCACCGGGACTTCGTGGACGTGATGCTGGACGTGAGCGAGGCGGAGGAGGGCGCCGGCGCCGGCGCCGGAGGAGTGCTGTTCGACACTGTCGCCATCAAGGCCGTTATCCTGGACATGATGGCCGCCGGCACAGACTCCAGCTTCACCACCACGGAATGGGTCATGGCGGAGCTCATCAACCATCCACGCGTGATGCGCAAGCTGCAGGATGAGATTCGCGCGGTCGTGGGCACATCGAGTGCATCCGCCGCCGCCGCCGCCACCGGCGGCGGCCAAGTCACCGAGGACCACCTCGGCGAGCTGCCCTTCCTCAGGGCCGTGATCAAGGAGATGCTCCGGCTGCACGCGCCGGGGCCGCTTCTCCTCCCCCGCGAGACGGTGGAGGACACGGAGCTGCTGGGCTACCGCATCCCGGCGCGCACGCGGGTGATCATCAACGTGTGGGCCATCGGCCGCGACGCGGCGGCGTGGGGTGATTCCGCGGAGGAGTTCGTGCCGGAGCGGTGGCTCGATGGCGGCGGCGGTGGCGGCGTGGAGTACGCGCAGCAGCTGGGGAAGGACTCCAGGTTTGTGCCGTTCGGCGCCGGGAGGAGAGGCTGCCCCGGCGCCGGGTTCGCCGCGCTGAGCGTCGAGCTGGCGCTCGCCAACCTGCTGTACCACTTCGACTGGGAGTTGCCACCGCCGGCGGCCAGCGGGATCATGGCGACGACGAGATTGGACATGGACGAGCTGTTCGGATTGTCCGTGCGTCTCAAGGCGGATCTGAATCTAGTTGCCAAGCCGTGGTCTCCTGGAGCATCTTAA
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| Protein seq | MELSSLAALLHSPLLLAVLLLVFSWLIVSSTKKRPPPPCGDGGRRLPLPPSPPGVPLLGHLPLLGTLPHRKLRSMAEAHGPVMLLRLGRVPAVVASSAAAAEEVMRTRDLAFASRPRVRMSERLFYGRDMAFAPYGEFWRQARRVTVLHLLSPRRVLSFRGVREQEVAALLDRVRRRCGGGGETVNLSDLLMSYAHGVISRAAFGHGGAHGFDGDEGGEKLRKLFADFEGLLGTMTVGEFVPWLAWVDKLTGLDAKVARTSAAMDGLLERVIADHRERRRSRGQAVGDGEADADHRDFVDVMLDVSEAEEGAGAGAGGVLFDTVAIKAVILDMMAAGTDSSFTTTEWVMAELINHPRVMRKLQDEIRAVVGTSSASAAAAATGGGQVTEDHLGELPFLRAVIKEMLRLHAPGPLLLPRETVEDTELLGYRIPARTRVIINVWAIGRDAAAWGDSAEEFVPERWLDGGGGGGVEYAQQLGKDSRFVPFGAGRRGCPGAGFAALSVELALANLLYHFDWELPPPAASGIMATTRLDMDELFGLSVRLKADLNLVAKPWSPGAS |
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| Function | Cytochrome P450 71A1 [UniProtKB/Swiss-Prot:P24465] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0227500 | OsNip_01t0227500-01 | Chr01 | 7053100 | 7056373 | + | RAP2018-11-26 | ||
| CDS seq | ATGGAGCTCTCGTCGCTTGCTGCTCTGTTGCACTCACCCCTCCTCCTTGCCGTGCTCCTGCTCGTCTTCTCATGGCTGATCGTCTCGTCGACCAAGAAGAGGCCTCCTCCGCCCTGCGGCGATGGCGGCCGGCGGCTGCCGCTGCCACCGTCGCCGCCGGGTGTCCCGCTACTCGGGCACCTCCCGCTTCTTGGCACCTTGCCGCACCGGAAGCTCCGGTCGATGGCCGAGGCGCACGGCCCGGTGATGCTGCTGCGGCTCGGCCGCGTGCCCGCCGTCGTGGCGTCGTCGGCGGCCGCGGCTGAGGAGGTGATGAGGACCCGGGACCTGGCGTTCGCGAGCCGGCCCAGGGTGCGCATGTCGGAGCGGCTCTTCTACGGCCGCGACATGGCGTTCGCGCCCTACGGCGAGTTCTGGCGCCAGGCGCGCCGCGTCACCGTGCTCCACCTCCTCAGCCCGCGCCGCGTCCTCTCCTTCCGCGGCGTCCGGGAGCAGGAGGTCGCCGCGCTGCTGGACCGCGTCCGGCGCCGCTGCGGCGGCGGCGGCGAGACCGTGAACCTGAGCGACCTGCTCATGTCCTACGCCCACGGCGTCATCTCCCGGGCGGCGTTCGGCCACGGCGGCGCGCACGGGTTCGACGGCGACGAGGGGGGAGAGAAGCTGAGGAAGCTGTTCGCCGACTTCGAGGGGCTTCTCGGGACGATGACGGTGGGGGAGTTCGTGCCATGGCTGGCGTGGGTGGACAAGCTGACGGGCCTTGACGCCAAGGTGGCGCGCACGTCGGCGGCGATGGACGGCTTGCTGGAGCGTGTCATCGCGGACCACCGCGAGCGGCGGCGCAGCCGCGGCCAGGCGGTCGGCGACGGCGAGGCGGACGCTGATCACCGGGACTTCGTGGACGTGATGCTGGACGTGAGCGAGGCGGAGGAGGGCGCCGGCGCCGGCGCCGGAGGAGTGCTGTTCGACACTGTCGCCATCAAGGCCGTTATCCTGGACATGATGGCCGCCGGCACAGACTCCAGCTTCACCACCACGGAATGGGTCATGGCGGAGCTCATCAACCATCCACGCGTGATGCGCAAGCTGCAGGATGAGATTCGCGCGGTCGTGGGCACATCGAGTGCATCCGCCGCCGCCGCCGCCACCGGCGGCGGCCAAGTCACCGAGGACCACCTCGGCGAGCTGCCCTTCCTCAGGGCCGTGATCAAGGAGATGCTCCGGCTGCACGCGCCGGGGCCGCTTCTCCTCCCCCGCGAGACGGTGGAGGACACGGAGCTGCTGGGCTACCGCATCCCGGCGCGCACGCGGGTGATCATCAACGTGTGGGCCATCGGCCGCGACGCGGCGGCGTGGGGTGATTCCGCGGAGGAGTTCGTGCCGGAGCGGTGGCTCGATGGCGGCGGCGGTGGCGGCGTGGAGTACGCGCAGCAGCTGGGGAAGGACTCCAGGTTTGTGCCGTTCGGCGCCGGGAGGAGAGGCTGCCCCGGCGCCGGGTTCGCCGCGCTGAGCGTCGAGCTGGCGCTCGCCAACCTGCTGTACCACTTCGACTGGGAGTTGCCACCGCCGGCGGCCAGCGGGATCATGGCGACGACGAGATTGGACATGGACGAGCTGTTCGGATTGTCCGTGCGTCTCAAGGCGGATCTGAATCTAGTTGCCAAGCCGTGGTCTCCTGGAGCATCTTAA
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| Protein seq | MELSSLAALLHSPLLLAVLLLVFSWLIVSSTKKRPPPPCGDGGRRLPLPPSPPGVPLLGHLPLLGTLPHRKLRSMAEAHGPVMLLRLGRVPAVVASSAAAAEEVMRTRDLAFASRPRVRMSERLFYGRDMAFAPYGEFWRQARRVTVLHLLSPRRVLSFRGVREQEVAALLDRVRRRCGGGGETVNLSDLLMSYAHGVISRAAFGHGGAHGFDGDEGGEKLRKLFADFEGLLGTMTVGEFVPWLAWVDKLTGLDAKVARTSAAMDGLLERVIADHRERRRSRGQAVGDGEADADHRDFVDVMLDVSEAEEGAGAGAGGVLFDTVAIKAVILDMMAAGTDSSFTTTEWVMAELINHPRVMRKLQDEIRAVVGTSSASAAAAATGGGQVTEDHLGELPFLRAVIKEMLRLHAPGPLLLPRETVEDTELLGYRIPARTRVIINVWAIGRDAAAWGDSAEEFVPERWLDGGGGGGVEYAQQLGKDSRFVPFGAGRRGCPGAGFAALSVELALANLLYHFDWELPPPAASGIMATTRLDMDELFGLSVRLKADLNLVAKPWSPGAS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0227500 | OsNip_01t0227500-02 | Chr01 | 7053105 | 7056372 | + | IsoSeq | ||
| CDS seq | CACTCGTTCAGACATGGAGCTCTCGTCGCTTGCTGCTCTGTTGCACTCACCCCTCCTCCTTGCCGTGCTCCTGCTCGTCTTCTCATGGCTGATCGTCTCGTCGACCAAGAAGAGGCCTCCTCCGCCCTGCGGCGATGGCGGCCGGCGGCTGCCGCTGCCACCGTCGCCGCCGGGTGTCCCGCTACTCGGGCACCTCCCGCTTCTTGGCACCTTGCCGCACCGGAAGCTCCGGTCGATGGCCGAGGCGCACGGCCCGGTGATGCTGCTGCGGCTCGGCCGCGTGCCCGCCGTCGTGGCGTCGTCGGCGGCCGC
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| Protein seq | HSFRHGALVACCSVALTPPPCRAPARLLMADRLVDQEEASSALRRWRPAAAAATVAAGCPATRAPPASWHLAAPEAPVDGRGARPGDAAAARPRARRRGVVGGR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.076792 | 4.519392 | 0.729771 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g12750 | RBH | 1.390752 | 2.451716 | 0.143690 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0227500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0009140 | SBH | 0.318140 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0008790 | SBH | 0.267467 | 0.0 | 2.846329 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0009160 | SBH | 0.699528 | 0.0 | 1.015152 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0008690 | SBH | 0.121134 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0008760 | SBH | 13.217168 | 0.452093 | 2.263297 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0115100 | SBH | 4.9183875 | 0.1392645 | 0.026262 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0008720 | SBH | 0.000000 | 0.0 | 0.255033 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0114800 | RBH | 3.8542705 | 0.1808645 | 0.0066625 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0008620 | RBH | 0.317133 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0008770 | SBH | 0.112449 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0008720 | SBH | 2.587458 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0008780 | RBH | 0.606624 | 0.0 | 0.890018 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0008610 | SBH | 0.374553 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G008780 | SBH | 0.610610 | 0.0 | 0.584088 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0008660 | SBH | 0.464144 | 0.0 | 2.369665 |
