Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0216400 | OGI:01020220 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:6361526-6363457 | ||||||||
| Gene Symbol | GELP9, OsGELP9 | ||||||||||
| DNA seq | ATGGAGCACTCACCTTCAAACAAAATGACCCTCCTTCTCCTCCTCCTCCTCCTCCTTGGATGCACGCACCACGGTCAGGCGAACATGTACTCCGGCCATCCCAAGATCGACTCCATCTTCAGCTTCGGCAACTCGTACTCCGACACCGGCAACTTCGTCAAGCTGGCGGCGCCGGTGATTCCCGTCATCGCTTTCAACAACCTCCCCTACGGCGAGACCTTCTTCGGCCACCCCACCGGCCGTGCCTCCGACGGCCGCCTCAACGTCGACTTCATCGGTGCGCGCGCTTCAATTCCCTCGTGATTACTGCACCGGCGAGCATGGATACTTGATCGATCGATCGATCGATATATTGATCATTTGAACAACATTGCAGCTGAGGACTTTGGAGTCCCCTTGCTCCCCCCGTACCTTGGCGAGTCCAAGAACTTCAGCCATGGCGCCAACTTCGCCGTCGTCGGCGCCACAGCGCTCGACCTCGCCTTCTTCCAGAAGAACAACATCACCAGCGTGCCCCCGTTCAACACCTCATTGAGCGTGCAGGTCGAGTGGTTCCACAAGCTCAAGCCTACCTTGTGCTCGACGACCCAAGGTACGTACGTCCGTGTAATGCTACATCTAATCTTGGTAATTAACCGATCATTAATTTTGGTGGAAGAGAATTCATCGATCGATCACCTGTTTGATTGATCTGTACGTCTTCAGGTTGCAGAGATTACTTCGAGAGATCGCTCTTCTTCATGGGCGAGTTCGGCGGCAACGACTACGTCTTCCTCTTGGCCGCCGGCAAGACCGTCGACGAGGCCATGTCGTACGTGCCAAAGGTCGTCGGAGTTATCTCTGCCGGCGTCGAGGTTACCACAGTTCTCTTTCCTTCAGACGCTAATTAATTAAGTTGCTGTCACGTCCTAGCTGATTAATTAATCAATTAATTAAACCAAAATGCAGGCGGTGATCGAGGAGGGAGCCAGGTACGTGGTGGTGCCGGGTCAGCTGCCGACGGGGTGCCTCCCGATCATCCTCACGCTGTACGCGAGCGCGAACGCGACGGACTACGAGTCCGGCGCCGGCTGCCTGAGGCGGTTCAACGAGCTCGCACGCTACCACAACGCGGCGCTGTTCGCGGCGGTGTCGCTGCTCCGGGGCAAGCACCCGTCGGCCGCCATCGTCTTCGCCGACTACTACCAGCCGGTGATCGAGTTCGTGCGAATGCCAGAAAATTTCGGTGAGTGTATATATAATTATATGATTTGTTCGATTTCTCTGATTCTCTGCACACGCACGTACGGCTGAATTTAATGCTTCAAGAATTTTGACCTGAATTAGCAGGCGGATGGCTTAGTTGCAAGTCTCCATCGCGAAAGTAAACGTTGTCTTGTTGTTGAGTACGCTAGTTGCATGCATCGCAAAAAAAAAGTCCACGGTCGACTAGAAAATTTAGTGATGTTGAAACGAGAATTTTTGAAATTGTCTGGAATGAGCTCATGTCTCGCGCAAACAGAGTAATTAATAAAGAGTTTACGATACGAATATATCACTGGTCTGATATACTTATATGACCATATTTTCGCCGACTTGATCGATTCGGAGATCTACGAGTTGAAACATCAAAGTACTTAATTAGTGATCTGAAATGCTTTCTGTTTTGTTGTTGTCTCTTTCTGACCTCGCTAATAACTTTGGTTGCCAACGCTGCATGCAGGGTTCAGTCGCTCGTCGAGGCTCCGGGCGTGCTGCGGCGGCGGGGGGCGGTACAACTACAACGCGACGGCGGCGTGCGGCCTCGCCGGCGCGACGGCGTGCCCGGACCCCGCCGCGTCGATCAACTGGGACGGCGTCCACCTGACGGAGGCGGCCTACGGCCGCATCGCCGCCGGCTGGCTGCGCGGCCCGTACGCGCAGCCGCCCATCCTCGCGGCCGTGCGCCCGTAG
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| CDS seq | ATGGAGCACTCACCTTCAAACAAAATGACCCTCCTTCTCCTCCTCCTCCTCCTCCTTGGATGCACGCACCACGGTCAGGCGAACATGTACTCCGGCCATCCCAAGATCGACTCCATCTTCAGCTTCGGCAACTCGTACTCCGACACCGGCAACTTCGTCAAGCTGGCGGCGCCGGTGATTCCCGTCATCGCTTTCAACAACCTCCCCTACGGCGAGACCTTCTTCGGCCACCCCACCGGCCGTGCCTCCGACGGCCGCCTCAACGTCGACTTCATCGCTGAGGACTTTGGAGTCCCCTTGCTCCCCCCGTACCTTGGCGAGTCCAAGAACTTCAGCCATGGCGCCAACTTCGCCGTCGTCGGCGCCACAGCGCTCGACCTCGCCTTCTTCCAGAAGAACAACATCACCAGCGTGCCCCCGTTCAACACCTCATTGAGCGTGCAGGTCGAGTGGTTCCACAAGCTCAAGCCTACCTTGTGCTCGACGACCCAAGGTTGCAGAGATTACTTCGAGAGATCGCTCTTCTTCATGGGCGAGTTCGGCGGCAACGACTACGTCTTCCTCTTGGCCGCCGGCAAGACCGTCGACGAGGCCATGTCGTACGTGCCAAAGGTCGTCGGAGTTATCTCTGCCGGCGTCGAGGCGGTGATCGAGGAGGGAGCCAGGTACGTGGTGGTGCCGGGTCAGCTGCCGACGGGGTGCCTCCCGATCATCCTCACGCTGTACGCGAGCGCGAACGCGACGGACTACGAGTCCGGCGCCGGCTGCCTGAGGCGGTTCAACGAGCTCGCACGCTACCACAACGCGGCGCTGTTCGCGGCGGTGTCGCTGCTCCGGGGCAAGCACCCGTCGGCCGCCATCGTCTTCGCCGACTACTACCAGCCGGTGATCGAGTTCGTGCGAATGCCAGAAAATTTCGGGTTCAGTCGCTCGTCGAGGCTCCGGGCGTGCTGCGGCGGCGGGGGGCGGTACAACTACAACGCGACGGCGGCGTGCGGCCTCGCCGGCGCGACGGCGTGCCCGGACCCCGCCGCGTCGATCAACTGGGACGGCGTCCACCTGACGGAGGCGGCCTACGGCCGCATCGCCGCCGGCTGGCTGCGCGGCCCGTACGCGCAGCCGCCCATCCTCGCGGCCGTGCGCCCGTAG
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| Protein seq | MEHSPSNKMTLLLLLLLLLGCTHHGQANMYSGHPKIDSIFSFGNSYSDTGNFVKLAAPVIPVIAFNNLPYGETFFGHPTGRASDGRLNVDFIAEDFGVPLLPPYLGESKNFSHGANFAVVGATALDLAFFQKNNITSVPPFNTSLSVQVEWFHKLKPTLCSTTQGCRDYFERSLFFMGEFGGNDYVFLLAAGKTVDEAMSYVPKVVGVISAGVEAVIEEGARYVVVPGQLPTGCLPIILTLYASANATDYESGAGCLRRFNELARYHNAALFAAVSLLRGKHPSAAIVFADYYQPVIEFVRMPENFGFSRSSRLRACCGGGGRYNYNATAACGLAGATACPDPAASINWDGVHLTEAAYGRIAAGWLRGPYAQPPILAAVRP |
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| Function | GDSL esterase/lipase At5g45910 [UniProtKB/Swiss-Prot:Q9FJ45] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0216400 | OsNip_01t0216400-00 | Chr01 | 6361526 | 6363457 | + | RAP2018-11-26 | ||
| CDS seq | ATGGAGCACTCACCTTCAAACAAAATGACCCTCCTTCTCCTCCTCCTCCTCCTCCTTGGATGCACGCACCACGGTCAGGCGAACATGTACTCCGGCCATCCCAAGATCGACTCCATCTTCAGCTTCGGCAACTCGTACTCCGACACCGGCAACTTCGTCAAGCTGGCGGCGCCGGTGATTCCCGTCATCGCTTTCAACAACCTCCCCTACGGCGAGACCTTCTTCGGCCACCCCACCGGCCGTGCCTCCGACGGCCGCCTCAACGTCGACTTCATCGCTGAGGACTTTGGAGTCCCCTTGCTCCCCCCGTACCTTGGCGAGTCCAAGAACTTCAGCCATGGCGCCAACTTCGCCGTCGTCGGCGCCACAGCGCTCGACCTCGCCTTCTTCCAGAAGAACAACATCACCAGCGTGCCCCCGTTCAACACCTCATTGAGCGTGCAGGTCGAGTGGTTCCACAAGCTCAAGCCTACCTTGTGCTCGACGACCCAAGGTTGCAGAGATTACTTCGAGAGATCGCTCTTCTTCATGGGCGAGTTCGGCGGCAACGACTACGTCTTCCTCTTGGCCGCCGGCAAGACCGTCGACGAGGCCATGTCGTACGTGCCAAAGGTCGTCGGAGTTATCTCTGCCGGCGTCGAGGCGGTGATCGAGGAGGGAGCCAGGTACGTGGTGGTGCCGGGTCAGCTGCCGACGGGGTGCCTCCCGATCATCCTCACGCTGTACGCGAGCGCGAACGCGACGGACTACGAGTCCGGCGCCGGCTGCCTGAGGCGGTTCAACGAGCTCGCACGCTACCACAACGCGGCGCTGTTCGCGGCGGTGTCGCTGCTCCGGGGCAAGCACCCGTCGGCCGCCATCGTCTTCGCCGACTACTACCAGCCGGTGATCGAGTTCGTGCGAATGCCAGAAAATTTCGGGTTCAGTCGCTCGTCGAGGCTCCGGGCGTGCTGCGGCGGCGGGGGGCGGTACAACTACAACGCGACGGCGGCGTGCGGCCTCGCCGGCGCGACGGCGTGCCCGGACCCCGCCGCGTCGATCAACTGGGACGGCGTCCACCTGACGGAGGCGGCCTACGGCCGCATCGCCGCCGGCTGGCTGCGCGGCCCGTACGCGCAGCCGCCCATCCTCGCGGCCGTGCGCCCGTAG
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| Protein seq | MEHSPSNKMTLLLLLLLLLGCTHHGQANMYSGHPKIDSIFSFGNSYSDTGNFVKLAAPVIPVIAFNNLPYGETFFGHPTGRASDGRLNVDFIAEDFGVPLLPPYLGESKNFSHGANFAVVGATALDLAFFQKNNITSVPPFNTSLSVQVEWFHKLKPTLCSTTQGCRDYFERSLFFMGEFGGNDYVFLLAAGKTVDEAMSYVPKVVGVISAGVEAVIEEGARYVVVPGQLPTGCLPIILTLYASANATDYESGAGCLRRFNELARYHNAALFAAVSLLRGKHPSAAIVFADYYQPVIEFVRMPENFGFSRSSRLRACCGGGGRYNYNATAACGLAGATACPDPAASINWDGVHLTEAAYGRIAAGWLRGPYAQPPILAAVRP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0216000 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g11750 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0216400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0008360 | SBH | 0.0 | 2.965958 | 0.117091 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0008000 | SBH | 0.0 | 4.866177 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0008400 | SBH | 0.0 | 1.864694 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0007920 | SBH | 0.0 | 0.667822 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0008000 | SBH | 0.0 | 5.298227 | 2.600528 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0103300 | SBH | 0.1989295 | 1.6264385 | 0.1418115 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0007970 | SBH | 0.0 | 0.438153 | 0.046880 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0103900 | SBH | 0.027279 | 0.023326 | 0.003999 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0009380 | SBH | 0.0 | 0.201504 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0008000 | SBH | 0.0 | 5.738152 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0007990 | SBH | 0.0 | 14.911513 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0008010 | SBH | 0.0 | 0.702329 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0007890 | SBH | 0.0 | 3.279213 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G008020 | SBH | 0.0 | 3.260542 | 0.260550 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0007870 | RBH | 0.0 | 6.473094 | 0.832347 |
