Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0153200 | OGI:01009750 | 2/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:2862774-2863569 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTATTGATCATCCAAGATAAATCTCTCTGTTAGAAGAATCCCAGAACATTTTCTCCCATATGCTTTCTCCTTGCCTCTTTCATGAATCATGATCCACGGTACCGGCAGAAGTAGTGAGGGCGATGTAGGCATGTAGCCAGACTGCAAACAGCACAACAATAAAGGGATGGGAAAAAGCTTGGTCAGCTTTTTATCGAGCTTTCTTCAAAATTATTTTTCTATAATTTCTTGTTAATGAGCCGAGCCAAAATAAAAACACATTTCATTCAAAATTGACTAGTTTTCATTTTAAAAGAATAATCACATCAATCAGAGCAATTTTGAACCAGGCCAGCTAAACGAGTTTTTTTTCAGCCCTTTGAAAATAATGAAGTACCCTGAAAAATCTTGCTAAAAGATAGAAGCATCTTAACTAAGTGATATTTCCAGATATGTTATTGATAGTTGTATGAACTAACCTGGTGTGTAGGGAAAGAGACCTGCGGTCCAGGACTCAATTTCTTGACTTTAACATCAGAACGGAAGCTGATGACGCCCCATTTGTTCAGTCTACCATCAAACTCAAGGATTATTTCACCAGACTTGTGATCATCAACAAACCATATTCGCCTATGTGACCTGCAATCAGAAACGCAACAATATTAGTTACAGCGGCGTTTCTGTCAAGTTATGATGACCATTGTTTTATACATCTAGAGATTAAAAATGAGTAAGGGGGTATACGCTCAAAGAAGACACAATGCGATATATACCGACTTGATGGGTAACCTTTGACAACAGCCTGAATCCCGATCAT
More
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| CDS seq | ATGATCGGGATTCAGGCTGTTGTCAAAGGTTACCCATCAAGTCGGTCACATAGGCGAATATGGTTTGTTGATGATCACAAGTCTGGTGAAATAATCCTTGAGTTTGATGGTAGACTGAACAAATGGGGCGTCATCAGCTTCCGTTCTGATGTTAAAGTCAAGAAATTGAGTCCTGGACCGCAGGTCTCTTTCCCTACACACCAGTCTGGCTACATGCCTACATCGCCCTCACTACTTCTGCCGGTACCGTGGATCATGATTCATGAAAGAGGCAAGGAGAAAGCATATGGGAGAAAATGTTCTGGGATTCTTCTAACAGAGAGATTTATCTTGGATGATCAATAG |
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| Protein seq | MIGIQAVVKGYPSSRSHRRIWFVDDHKSGEIILEFDGRLNKWGVISFRSDVKVKKLSPGPQVSFPTHQSGYMPTSPSLLLPVPWIMIHERGKEKAYGRKCSGILLTERFILDDQ |
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| Function | 40S ribosomal protein S15a [UniProtKB/Swiss-Prot:Q9AT34] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0153200 | OsNip_01t0153200-00 | Chr01 | 2862774 | 2863569 | - | RAP2018-11-26 | ||
| CDS seq | ATGATCGGGATTCAGGCTGTTGTCAAAGGTTACCCATCAAGTCGGTCACATAGGCGAATATGGTTTGTTGATGATCACAAGTCTGGTGAAATAATCCTTGAGTTTGATGGTAGACTGAACAAATGGGGCGTCATCAGCTTCCGTTCTGATGTTAAAGTCAAGAAATTGAGTCCTGGACCGCAGGTCTCTTTCCCTACACACCAGTCTGGCTACATGCCTACATCGCCCTCACTACTTCTGCCGGTACCGTGGATCATGATTCATGAAAGAGGCAAGGAGAAAGCATATGGGAGAAAATGTTCTGGGATTCTTCTAACAGAGAGATTTATCTTGGATGATCAATAG
More
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| Protein seq | MIGIQAVVKGYPSSRSHRRIWFVDDHKSGEIILEFDGRLNKWGVISFRSDVKVKKLSPGPQVSFPTHQSGYMPTSPSLLLPVPWIMIHERGKEKAYGRKCSGILLTERFILDDQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.415326 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g06000 | SBH | 0.395529 | 1.053836 | 0.235553 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0153200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0003940 | SBH | 0.246874 | 1.593284 | 0.904128 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0003700 | SBH | 0.0 | 0.329879 | 1.004146 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0003940 | SBH | 0.383558 | 0.523348 | 2.035174 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0003530 | SBH | 0.000000 | 0.035554 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0003790 | SBH | 1.718287 | 0.000000 | 1.624595 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0003750 | SBH | 0.059261 | 0.098403 | 0.151221 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0050500 | RBH | 0.4036985 | 1.917744 | 2.9050595 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0003540 | SBH | 0.037475 | 0.073776 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0003660 | SBH | 0.110747 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0003810 | SBH | 0.0 | 11.621308 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0003770 | SBH | 0.000000 | 0.156034 | 0.062985 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0003710 | SBH | 0.035843 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G003770 | SBH | 0.087759 | 0.269932 | 0.537030 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0003640 | SBH | 0.288466 | 0.000000 | 0.687019 |
