Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLaMu_01g0003710 OGI:01009760 | 15/16 LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) Chr01:2901639-2906412
Gene Symbol -
DNA seq

acagcagaacgagtgcaaatcaatgggcaataaaactaaatagacggcacaatagaatccaaaacaggaacaattcataaatcatataggcacgtatctacaccatcttctacgctgctgctagctttgagtccatctacagcatcactgcatgtatacgaatcctgatacagtgatactagtggccttgaacttgaggacagcaagtctttttctattgatcatccaagataaatctctctgttagaagaatcccagaacattttctcccatatgcttctccttgcctctttcatgaatcatgatccacggtaccggcagaagtagtgagggcgatgtaggcatgtagccagactgcaaacaacacaacaataaagggatgggaaaaagcttggtcagctttttatcgagctttcttcaaaattatttttctataatttcttgttaatgagccgagccaaaataaaaacacatttcattcaaaattgactagttttcattttaaaagaataatcacatcaatcagagcaattttgaaccaggccagctaaacgagttttttttcagccctttgaaaataatgaagtaccctgaaaaatcttgctaaaagatagaagcatcttaactaagtgatatttccagatatgttattgatagttgtatgaactaacctggtgtgtagggaaagagacctgcggtccaggactcaatttcttgactttaacatcagaacggaagctgatgacgccccatttgttcagtctaccatcaaactcaaggattatttcaccagacttgtgatcatcaacaaaccatattcgcctatgtgacctgcaatcagaaacgcaacaatattagttacagcggcgtttctgtcaagttatgatgaccattgttttatacatctagagattaaaaatgagtaagggggtatacgctcaaagaagacacaatgcgatatataccgacttgatgggtaacctttgacaacagcctgaatcccgatcataatttgcttctactacgattctctggtacacaatgagagttcagttttcctttccctggtacagaatagtacattaaattgtcaagatgagtaagtttcacaaaaaaaagaagaagaaaagaatggagtgtgccatgcagaatctgaaggggatgttatgctcgtacagcttaggtcttgaggaaacagaatttcctggaaatatatcctgtggcactatctcattgaagcatgaaatcttgtagcctaaaatcagcactaacaacaccaccaacaacaatatcagcctctagtcccaagcaagtttgggtagatcaacattagcggtattagccataagatcaagcatcaaaaagattctgttacactggctcagaaaccccaagcacgttatgacactgttgaaaattttaaatggtgttagatgtgtctatgtaactagatcaaaataaatcccttaaaattgtgtaatctccttttttatattttcagacaaggctatgtaaaattgcaaagttggaaataattgttgtcttagcaatgttgaatgtaaagtccaaacagttgataatgaatttttaagcttggaatctatagaacttttaccaagacgaatgtgtcttaataacactatttcagtcttaacaggaaacatcaatagtaagatggcatgaaataagaaaaaaaaacattcattaacaaaaaacactttttcttgaagtaaagaatgtaaagcagtaaaggtactgtcaaattaaaatctgatagctcaaatgtacaaatggtacaatactatctgcaagattgtggacaacatacatttggtagaaaagtaattgtcttaaattgcttacttgttatgtgtagaatccatgagctcatatacagaaatttgtatgtattgttttgtccctctgaagcaactgaagtcataatgtagctacagttcagggaactatttgatggatcctgttctagatgaatgatagcaacttatgccattagatgagagcctgaaatgcactgccctagacatcaggtggtaagcagcaatgcctgccccttgctgaccatcagagaaattcctgagagaagagctctatacgtatcccagtttggttgcaccccacttctaatcatattagtgtatattcccaaagccttatcagattcaccatgaacattgcaccaccgtataaaaatgttgtatgctacaacatcaggttttaatcccttgtagagcatttcattccaaagctcaaatgctttgtttatatcacccatcttacagagctcatgtattattgtagaatagctgatgcaatctggagagaaaccactttcagtgatcttgctcataaggtcaattgcctcttggatctttccagccttgcagaggcccttgatcaatatgttaaatgacactatgctagctagatggccttgaagcatggctgaatggagatctttggccttttccatgtccccttcagttgcaaaataatcaagaaaacaattataggtaaatttatttggaagaacattcccagctaacatctctttacagaggagctctgcactgcccaaataccctgacttgcagagattatttatcaagactgtatgtgttacagtgtttggagagcagccatcaacaaccatctgatcccagcagtttaaagcttggatcatattttcttcctttgacagtgcatcaatcatgcatgtgtagaatatatcatctggcttgacaccttgttctttcatctccctaaatagcacacatgatttttccttatcatgctgtttcagagcagcatacacgattatggtaaaactgacaagatcaagcttgactcctcgcactgccatctcatcccaaagatggtatgtttcagtgaaccttccttctctaaagaatccatacagaagcgctgtcaggctaaagttgtttagcacagcatagctattttctagatcagcaacaaattcatttgcttttgacactccactggtcaagcaaagtccacttattaatgatctataagtgtaattatcaggtttgagccccatttccaccatttgatcatataactggaatgcctttcttatatttccaacaaggcaatacccttctatcataacattaaaggtcacttcatttggtattacattgctgtcaatcattttatcaaacagcctagcagcttcatccatttttttatctttgcagaaaccattgataagtgctgtgaaagtataattattccatgcgatgcccctctcagccatctccctgtggagttccatgcaactagacagatctccattcctacataaaccagctattaggggagaatatgatgctgcagttggtgtcaatccctccttaaccataccactcaaaagtccccttgcccgatccaaagaaccctgtttacagtaaccattgattaaggaattgtatggataaactgtcactttgatacccttatccctcatcttattgaacaaacaaagtgcatcttctatcatccctctcttgcacagggcatgtatcaatatagcataagtcacctcatttggctccagacccctgcccgccatctctttaaagagcctatctgcatcgtcaaacctttcattcttgcacagtttgtcaatcaatgcattgtatgcaaacacatttggtaccatgcccaaatcacccaatttacaagctaaactgaatgcctcctcaaccagctccttcttgcgtagctcgtcaatcataaatgagcaattagcctctgatggcacaaaaccaagcctgatcatgtcatgtgttatcctcagtgccatttccagctcttccatccgacaaaaaccatagaccagagtacggtatgtcacttcatcggctgtcactcctatgttcaccatgacattcttcacctccacagcctcctgaacgcgcatattcttgcataagccatacatcaatacattgtaaggcacagcgctggccttgaccccctcgctttccatccttaccaccaaccctctcgcaccatccagattcctggactcgcaataagctcgaatgcctgccgtgtaaacatactcatccagatgaacaccggactggagcattttatcaaacaggtcccgggcaagagcgaactgccgaatcttgacaagagagaacaatatctgagaagcggtatattggttaacagtaatccccgatgaaagggagaggccaagaacggcggcggcgtcgcgggcgcggcggaggcggaggtaagacgaggcgagcagcgcggcggcggtggaggccgcgcctggcgggaaggccgagagggaggaagcgtgggagagagacgagaatgaggaggaagcagacggagcggaggacgcgagggagaggaggagggaggcggcgtgccgggaggagaatgacgacgacgaggaggacggcgaggaggacaggaaggagagggcgaggagagacagtgacaccggggagacgaggtggggcggcagcaggaggaggaagcggcgggagagatcggggcgagatagcgaaggcgggaggaggaggagggaggagacgtgggcggcggccaggcggccgcggagcagcggggcggcgagggcggacggccaggtggaaggcggggtgtggtggaggatgtcggcgaggagcttaaccatgccggcatgtgaggtgatcgacgtggagttgggatcgccggcgatacgccggcgtgccggcggaggcat

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CDS seq

atgcctccgccggcacgccggcgtatcgccggcgatcccaactccacgtcgatcacctcacatgccggcatggttaagctcctcgccgacatcctccaccacaccccgccttccacctggccgtccgccctcgccgccccgctgctccgcggccgcctggccgccgcccacgtctcctccctcctcctcctcccgccttcgctatctcgccccgatctctcccgccgcttcctcctcctgctgccgccccacctcgtctccccggtgtcactgtctctcctcgccctctccttcctgtcctcctcgccgtcctcctcgtcgtcgtcattctcctcccggcacgccgcctccctcctcctctccctcgcgtcctccgctccgtctgcttcctcctcattctcgtctctctcccacgcttcctccctctcggccttcccgccaggcgcggcctccaccgccgccgcgctgctcgcctcgtcttacctccgcctccgccgcgcccgcgacgccgccgccgttcttggcctctccctttcatcggggattactgttaaccaatataccgcttctcagatattgttctctcttgtcaagattcggcagttcgctcttgcccgggacctgtttgataaaatgctccagtccggtgttcatctggatgagtatgtttacacggcaggcattcgagcttattgcgagtccaggaatctggatggtgcgagagggttggtggtaaggatggaaagcgagggggtcaaggccagcgctgtgccttacaatgtattgatgtatggcttatgcaagaatatgcgcgttcaggaggctgtggaggtgaagaatgtcatggtgaacataggagtgacagccgatgaagtgacataccgtactctggtctatggtttttgtcggatggaagagctggaaatggcactgaggataacacatgacatgatcaggcttggttttgtgccatcagaggctaattgctcatttatgattgacgagctacgcaagaaggagctggttgaggaggcattcagtttagcttgtaaattgggtgatttgggcatggtaccaaatgtgtttgcatacaatgcattgattgacaaactgtgcaagaatgaaaggtttgacgatgcagataggctctttaaagagatggcgggcaggggtctggagccaaatgaggtgacttatgctatattgatacatgccctgtgcaagagagggatgatagaagatgcactttgtttgttcaataagatgagggataagggtatcaaagtgacagtttatccatacaattccttaatcaatggttactgtaaacagggttctttggatcgggcaaggggacttttgagtggtatggttaaggagggattgacaccaactgcagcatcatattctcccctaatagctggtttatgtaggaatggagatctgtctagttgcatggaactccacagggagatggctgagaggggcatcgcatggaataattatactttcacagcacttatcaatggtttctgcaaagataaaaaaatggatgaagctgctaggctgtttgataaaatgattgacagcaatgtaataccaaatgaagtgacctttaatgttatgatagaagggtattgccttgttggaaatataagaaaggcattccagttatatgatcaaatggtggaaatggggctcaaacctgataattacacttatagatcattaataagtggactttgcttgaccagtggagtgtcaaaagcaaatgaatttgttgctgatctagaaaatagctatgctgtgctaaacaactttagcctgacagcgcttctgtatggattctttagagaaggaaggttcactgaaacataccatctttgggatgagatggcagtgcgaggagtcaagcttgatcttgtcagttttaccataatcgtgtatgctgctctgaaacagcatgataaggaaaaatcatgtgtgctatttagggagatgaaagaacaaggtgtcaagccagatgatatattctacacatgcatgattgatgcactgtcaaaggaagaaaatatgatccaagctttaaactgctgggatcagatggttgttgatggctgctctccaaacactgtaacacatacagtcttgataaataatctctgcaagtcagggtatttgggcagtgcagagctcctctgtaaagagatgttagctgggaatgttcttccaaataaatttacctataattgttttcttgattattttgcaactgaaggggacatggaaaaggccaaagatctccattcagccatgcttcaaggccatctagctagcatagtgtcatttaacatattgatcaagggcctctgcaaggctggaaagatccaagaggcaattgaccttatgagcaagatcactgaaagtggtttctctccagattgcatcagctattctacaataatacatgagctctgtaagatgggtgatataaacaaagcatttgagctttggaatgaaatgctctacaagggattaaaacctgatgttgtagcatacaacatttttatacggtggtgcaatgttcatggtgaatctgataaggctttgggaatatacactaatatgattagaagtggggtgcaaccaaactgggatacgtatagagctcttctctcaggaatttctctgatgctacattatgacttcagttgcttcagagggacaaaacaatacatacaaatttctgtatatgagctcatggattctacacataacaagtcacataggcgaatatggtttgttgatgatcacaagtctggtgaaataatccttgagtttgatggtagactgaacaaatggggcgtcatcagcttccgttctgatgttaaagtcaagaaattgagtcctggaccgcaggtctctttccctacacaccagtctggctacatgcctacatcgccctcactacttctgccggtaccgtggatcatgattcatgaaagaggcaaggagaagcatatgggagaaaatgttctgggattcttctaa

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Protein seq

MPPPARRRIAGDPNSTSITSHAGMVKLLADILHHTPPSTWPSALAAPLLRGRLAAAHVSSLLLLPPSLSRPDLSRRFLLLLPPHLVSPVSLSLLALSFLSSSPSSSSSSFSSRHAASLLLSLASSAPSASSSFSSLSHASSLSAFPPGAASTAAALLASSYLRLRRARDAAAVLGLSLSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFNKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGCSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGISLMLHYDFSCFRGTKQYIQISVYELMDSTHNKSHRRIWFVDDHKSGEIILEFDGRLNKWGVISFRSDVKVKKLSPGPQVSFPTHQSGYMPTSPSLLLPVPWIMIHERGKEKHMGENVLGFF

Function Putative pentatricopeptide repeat-containing protein At5g59900 [UniProtKB/Swiss-Prot:Q9FJE6]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLaMu_01g0003710 OsLaMu_01g0003710.01 Chr01 2901639 2906412 - NAM
CDS seq

atgcctccgccggcacgccggcgtatcgccggcgatcccaactccacgtcgatcacctcacatgccggcatggttaagctcctcgccgacatcctccaccacaccccgccttccacctggccgtccgccctcgccgccccgctgctccgcggccgcctggccgccgcccacgtctcctccctcctcctcctcccgccttcgctatctcgccccgatctctcccgccgcttcctcctcctgctgccgccccacctcgtctccccggtgtcactgtctctcctcgccctctccttcctgtcctcctcgccgtcctcctcgtcgtcgtcattctcctcccggcacgccgcctccctcctcctctccctcgcgtcctccgctccgtctgcttcctcctcattctcgtctctctcccacgcttcctccctctcggccttcccgccaggcgcggcctccaccgccgccgcgctgctcgcctcgtcttacctccgcctccgccgcgcccgcgacgccgccgccgttcttggcctctccctttcatcggggattactgttaaccaatataccgcttctcagatattgttctctcttgtcaagattcggcagttcgctcttgcccgggacctgtttgataaaatgctccagtccggtgttcatctggatgagtatgtttacacggcaggcattcgagcttattgcgagtccaggaatctggatggtgcgagagggttggtggtaaggatggaaagcgagggggtcaaggccagcgctgtgccttacaatgtattgatgtatggcttatgcaagaatatgcgcgttcaggaggctgtggaggtgaagaatgtcatggtgaacataggagtgacagccgatgaagtgacataccgtactctggtctatggtttttgtcggatggaagagctggaaatggcactgaggataacacatgacatgatcaggcttggttttgtgccatcagaggctaattgctcatttatgattgacgagctacgcaagaaggagctggttgaggaggcattcagtttagcttgtaaattgggtgatttgggcatggtaccaaatgtgtttgcatacaatgcattgattgacaaactgtgcaagaatgaaaggtttgacgatgcagataggctctttaaagagatggcgggcaggggtctggagccaaatgaggtgacttatgctatattgatacatgccctgtgcaagagagggatgatagaagatgcactttgtttgttcaataagatgagggataagggtatcaaagtgacagtttatccatacaattccttaatcaatggttactgtaaacagggttctttggatcgggcaaggggacttttgagtggtatggttaaggagggattgacaccaactgcagcatcatattctcccctaatagctggtttatgtaggaatggagatctgtctagttgcatggaactccacagggagatggctgagaggggcatcgcatggaataattatactttcacagcacttatcaatggtttctgcaaagataaaaaaatggatgaagctgctaggctgtttgataaaatgattgacagcaatgtaataccaaatgaagtgacctttaatgttatgatagaagggtattgccttgttggaaatataagaaaggcattccagttatatgatcaaatggtggaaatggggctcaaacctgataattacacttatagatcattaataagtggactttgcttgaccagtggagtgtcaaaagcaaatgaatttgttgctgatctagaaaatagctatgctgtgctaaacaactttagcctgacagcgcttctgtatggattctttagagaaggaaggttcactgaaacataccatctttgggatgagatggcagtgcgaggagtcaagcttgatcttgtcagttttaccataatcgtgtatgctgctctgaaacagcatgataaggaaaaatcatgtgtgctatttagggagatgaaagaacaaggtgtcaagccagatgatatattctacacatgcatgattgatgcactgtcaaaggaagaaaatatgatccaagctttaaactgctgggatcagatggttgttgatggctgctctccaaacactgtaacacatacagtcttgataaataatctctgcaagtcagggtatttgggcagtgcagagctcctctgtaaagagatgttagctgggaatgttcttccaaataaatttacctataattgttttcttgattattttgcaactgaaggggacatggaaaaggccaaagatctccattcagccatgcttcaaggccatctagctagcatagtgtcatttaacatattgatcaagggcctctgcaaggctggaaagatccaagaggcaattgaccttatgagcaagatcactgaaagtggtttctctccagattgcatcagctattctacaataatacatgagctctgtaagatgggtgatataaacaaagcatttgagctttggaatgaaatgctctacaagggattaaaacctgatgttgtagcatacaacatttttatacggtggtgcaatgttcatggtgaatctgataaggctttgggaatatacactaatatgattagaagtggggtgcaaccaaactgggatacgtatagagctcttctctcaggaatttctctgatgctacattatgacttcagttgcttcagagggacaaaacaatacatacaaatttctgtatatgagctcatggattctacacataacaagtcacataggcgaatatggtttgttgatgatcacaagtctggtgaaataatccttgagtttgatggtagactgaacaaatggggcgtcatcagcttccgttctgatgttaaagtcaagaaattgagtcctggaccgcaggtctctttccctacacaccagtctggctacatgcctacatcgccctcactacttctgccggtaccgtggatcatgattcatgaaagaggcaaggagaagcatatgggagaaaatgttctgggattcttctaa

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Protein seq

MPPPARRRIAGDPNSTSITSHAGMVKLLADILHHTPPSTWPSALAAPLLRGRLAAAHVSSLLLLPPSLSRPDLSRRFLLLLPPHLVSPVSLSLLALSFLSSSPSSSSSSFSSRHAASLLLSLASSAPSASSSFSSLSHASSLSAFPPGAASTAAALLASSYLRLRRARDAAAVLGLSLSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFNKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGCSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGISLMLHYDFSCFRGTKQYIQISVYELMDSTHNKSHRRIWFVDDHKSGEIILEFDGRLNKWGVISFRSDVKVKKLSPGPQVSFPTHQSGYMPTSPSLLLPVPWIMIHERGKEKHMGENVLGFF

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.035843 0.0 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0153250 RBH 0.477513 1.481002 0.768184
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g06000 RBH 0.395529 1.053836 0.235553
Nipponbare | IRGSP 1.0 | RAP-db Os01g0153250 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0003940 RBH 0.246874 1.593284 0.904128
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0003700 RBH 0.0 0.329879 1.004146
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0003940 RBH 0.383558 0.523348 2.035174
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0003530 RBH 0.000000 0.035554 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0003790 RBH 1.718287 0.000000 1.624595
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0182400 SBH 0.509397 0.571504 0.991019
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0003750 RBH 0.059261 0.098403 0.151221
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0050600 RBH 0.3865695 1.419678 2.29878
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0003540 RBH 0.037475 0.073776 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_01g0003660 RBH 0.110747 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_01g0003810 RBH 0.0 11.621308 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0003770 RBH 0.000000 0.156034 0.062985
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_01g0003540 SBH 0.0 0.265276 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G003770 RBH 0.087759 0.269932 0.537030
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0003640 RBH 0.288466 0.000000 0.687019
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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