Basic Info
Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNip_01g0152700 OGI:01009450 | 16/16 Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) Chr01:2837892-2838171
Gene Symbol PIT, Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59, H2B, OsFbox002, OsFbox2, H2B.7
DNA seq

CCCAAAAGCAACCCAAAGCCATTCTTCTTACAGCCAATGACTACCAAACCAACAATTTAACATCCATTTCCAATCTTGGATATCACTTAAACAATATACCACATAAACATATAAAAACTACTATTACTACTAGGACTAGATGCAGGCGTACAGCCTAGGAGGAAGTGAACTTGGTAACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGGACGGCGGTCTGGATCTCCCGGGAGGTGATGGTGGGCTTCTTGTT
CDS seq

AACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCGCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTTACCAAGTTCACTTCCTCCTAG
Protein seq

NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Function Probable histone H2B.3 [UniProtKB/Swiss-Prot:Q1SU99]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNip_01g0152700 OsNip_01t0152700-01 Chr01 2837892 2838171 - RAP2018-11-26
CDS seq

AACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCGCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTTACCAAGTTCACTTCCTCCTAG
Protein seq

NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 3.008489 5.892233 16.689157

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0153100 SBH 11.194547 14.283401 28.699244
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g05970 RBH 6.162470 7.125157 5.142124
Nipponbare | IRGSP 1.0 | RAP-db Os01g0152700 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0003870 RBH 1.243768 47.571465 7.376620
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0003680 RBH 0.868598 27.771000 9.115763
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0003920 RBH 9.786414 117.584053 25.723530
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0003480 RBH 0.836611 1.633478 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0003750 RBH 37.773392 125.812149 56.293106
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0048600 RBH 31.9919235 53.900778 30.7694445
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0003650 SBH 1.348011 5.121269 3.676212
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0049800 RBH 33.8744125 36.403406 76.244484
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0003520 RBH 1.142210 1.500781 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_01g0003640 RBH 1.978133 131.230591 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_01g0003790 RBH 11.343522 166.534302 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0003700 SBH 1.940756 3.195471 1.455575
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_01g0003690 RBH 1.756623 55.736813 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G003760 RBH 5.810281 39.054600 12.842368
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0003590 RBH 9.615303 94.344337 20.701969
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Huazhong Agricultural University

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