Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_01g0003690 | OGI:01009450 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr01:2896550-2897363 | ||||||||
| Gene Symbol | PIT, Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59, H2B, OsFbox002, OsFbox2, H2B.7 | ||||||||||
| DNA seq | agttccccaaaattagacataaattaattaaaacaaacacaagttcagcacaaggcaaccaaagacaacataggagagatcacatattcacatgatacaaaagcattactagtgtatttcgaatccatgaaacagaagttcctcaaaagcagccccacctaattcttcttacagtcactaaatccccaacatccatttcccatcattgatgcactacagctagtagataaatagatcaaactaatattactactagcacaatagcaccaggtgcagcctaagaggaagtgaacttggtgacggccttggtgccctcggagacggcgtgcttggcaagctcgccggggaggacgaggcggacggcggtctggatctcccgggaggtgatggtgggcttcttgttgtagcgggcgagcttggcggactctccggcgagcttctcgaagatgtcgttgatgaaggagttcatgatggacatggccttggaggagatgccgatgtcggggtggacctgcttgagcaccttgaagatgtagatcttgtaggtctcgacgctcttcttccccttcttccgccccgccttcttcccctcgccgctgcccttctcgcccttgccggcggggagacgcttctccgccttgggcttcttccccgccggggccttctcggccttctccgccgcgggctcctcctccgcgggcttcttcgcggccggcttcttctccgccttgggcgccatggatgctgctctcttcttctcggggaggggaagcggtgtggatttcgctgcgtgtgtttgcaagactgcgatgtg
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| CDS seq | atggcgcccaaggcggagaagaagccggccgcgaagaagcccgcggaggaggagcccgcggcggagaaggccgagaaggccccggcggggaagaagcccaaggcggagaagcgtctccccgccggcaagggcgagaagggcagcggcgaggggaagaaggcggggcggaagaaggggaagaagagcgtcgagacctacaagatctacatcttcaaggtgctcaagcaggtccaccccgacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagctcgccggagagtccgccaagctcgcccgctacaacaagaagcccaccatcacctcccgggagatccagaccgccgtccgcctcgtcctccccggcgagcttgccaagcacgccgtctccgagggcaccaaggccgtcaccaagttcacttcctcttag
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| Protein seq | MAPKAEKKPAAKKPAEEEPAAEKAEKAPAGKKPKAEKRLPAGKGEKGSGEGKKAGRKKGKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS |
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| Function | Histone H2B.6 [UniProtKB/Swiss-Prot:A2WKT1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0003690 | OsLaMu_01g0003690.01 | Chr01 | 2896550 | 2897363 | - | NAM | ||
| CDS seq | atggcgcccaaggcggagaagaagccggccgcgaagaagcccgcggaggaggagcccgcggcggagaaggccgagaaggccccggcggggaagaagcccaaggcggagaagcgtctccccgccggcaagggcgagaagggcagcggcgaggggaagaaggcggggcggaagaaggggaagaagagcgtcgagacctacaagatctacatcttcaaggtgctcaagcaggtccaccccgacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagctcgccggagagtccgccaagctcgcccgctacaacaagaagcccaccatcacctcccgggagatccagaccgccgtccgcctcgtcctccccggcgagcttgccaagcacgccgtctccgagggcaccaaggccgtcaccaagttcacttcctcttag
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| Protein seq | MAPKAEKKPAAKKPAEEEPAAEKAEKAPAGKKPKAEKRLPAGKGEKGSGEGKKAGRKKGKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.756623 | 55.736813 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0152700 | RBH | 3.008489 | 5.892233 | 16.689157 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g05970 | RBH | 6.162470 | 7.125157 | 5.142124 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0152700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0003920 | RBH | 6.500912 | 91.725258 | 14.528399 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0003680 | RBH | 0.868598 | 27.771000 | 9.115763 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0003920 | RBH | 9.786414 | 117.584053 | 25.723530 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0003520 | RBH | 0.919863 | 4.700644 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0003750 | RBH | 37.773392 | 125.812149 | 56.293106 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0049200 | RBH | 196.824333 | 126.23777 | 214.0534745 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0003710 | RBH | 2.459734 | 12.163399 | 2.485675 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0050300 | RBH | 174.390999 | 53.249359 | 594.0306095 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0003520 | RBH | 1.142210 | 1.500781 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0003640 | RBH | 1.978133 | 131.230591 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0003790 | RBH | 11.343522 | 166.534302 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0003760 | RBH | 1.804020 | 5.470699 | 3.155083 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0003340 | RBH | 0.789545 | 25.894642 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G003740 | RBH | 0.519781 | 4.854779 | 3.090059 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0003630 | RBH | 11.044561 | 132.289597 | 28.785254 |
