Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0127700 | OGI:01005190 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:1518247-1521615 | ||||||||
| Gene Symbol | RLCK19, OsRLCK19 | ||||||||||
| DNA seq | CACCCCGCCACCGGGTCGCGCGCGTCGTTGAAACGTCACACCTAGCTAACTGCACTGCACTTCTGCGTGTCTGCGTCGTGTACTCGTGTGCTTTGGTGTTTTAATTTCTCTCTATTTTGCTCTGCTGCTGCCATGCCGTGGTCGTGCGGCTGGTGCGGGAGGTGGAGGAGGAGCAGCGGCGGAAGAGGAGGAGGCGCTGATCGTGAGGCCAACGGCGGTGGCGGCGGCGGCGGCGGCGGGGCGGCGTCGGGGAGGGAGGAGGAGCAGTGGAGCCTCTTCATCGAGCTGCCCGTGCTGGAGGCCGCCACCCGTGGCTTCTCCGACGACAACCTCCTCGGCCGCGGCGGATTCGGCCCCGTCTACAAGGCTTGTTTCTTACTGCCATCTCATCGTCCCCTTTCGCCATGGCTTTGCTTTGCTGCTAGGCTGTTGCCCTGTTTTGCTTGTGGAATTCACCTAACATTAACAAAGACTGGTTTTTTATTGGTTGGTCAACAAAGCCATTCCTTGCTTTCCATTCTGATTTTGTCCTTTTCACCTACCAAAACGACACAAATGATTGATCTAACCCTGTCTATGTATGGGTAATGGGTGTACTATCTTTTCCATGGACAAATATCTTTTCTACTGTTTGCTGGCTCTCTCTCTTTTTTTTTTCACCACTAATAACTGATTATACCTGCTCTGCTACTTTCAGACATCATTTCGTCAAATTAATATGCGATATTAGTTTTTTTCCTCTCTTTTGAGATTCTAATCTCAACATTGCACGAACCAAAGCATCATTTTTACTCCTGCAAAGCAAAGCAGTAGTAGTAAATAATAAACGTACCATTACTTGTCAGGAATTTTACATCTTGGGAAGAATGAACTACTAACTGACAAAAAATCGGTTGATCTTGTTACCATCTCTCTTCAGGGGGTGCTCGAGAATGGGCAGGAGATCGCCGTCAAGAAGCTGTCGCTGGAGTCACGGCAAGGTGTGAGAGAGTTCTTGAACGAGGTGAGGCTGCTGCTCAAGGTGCAGCACAGGAACCTGGTCTCCCTGCTCGGATGCTGCGCTTCCTCCGGTCACAAGATGCTTGTCTACCCTTACTTCCCAAATGGCAGCCTCGACCACTTCCTCTTCGGTGACACCTCTCTCTCATCTGCATACTACTGTATTATGTTGCAAAATGTCCTAATTATTAATTGCCATCAGATTGCTTCTGAATTACGGGTAGAATTTGTGAGCTAAATCTGACAGTTTGGTCATTTTTTTTAGTAGTATAACGAATCACTGTTATCTGTTTATCATTAATCAAAACACAAAGGTTCTAACCTCGGAAGCTAGGCACTCTGTTGGAGAGTTTGTGGTGCACAAATCATAATAGCCAAAACTCTATGGTAGTTCTGAACAAAATTCAGGGAAAGTGCTTGTAGAAACAGTCATTTCTGGTAGAAAAACAAGTCCCTACTGGAGTTCCATTGTTTGTGGCCTAGTGGTTTCAACTTTCAAGGAGACCAAAACGATGAGTTAGCCGTGGCAAAGCATATATTCGCACAGACACAGTCACACAGAGTTGTTCAGTCAATTAAGCAGAACACAGAATCTGCAAGAAGTCTTTTTGTCAGTCAATGTAAGGAAAAATCTGCCTTGACGTTCTCATTGACCTTTACTGTGTCAAAAGCAATACTTCGATTTGCTTAATCTCAAAGGCTCAACATATCACATCAAATCGGGTATGGCTGTATGCCATTATGCCGCCCAATGTCTTTGGATTGACCATTTCTCGAATAGGATTTCTTGTCATTTGGAGTAATCTGAACACCGCCCCCCCCCCCCCCACACACACACACACACAAACTTCTGTGTGGACAAACAAAAGACAGAAAGTTCAATTAGCTACTCCGTACCATAGTTTGAAATGCTCCATGATTTTGTTAAAAAAAAACATAAAGCATAACTAATTATGTTCTTTACAATTTCCAGTTTAAACATAAAGATACGCATGTACCTATACTTAATTCCATCTGCATATATAATCCATACAAAACCAGATCAGTATTCAGTACTACATCCATTCCAAAATTAATATAATGACTTTTAGCACTAGTCCAGATATATGACTAAAAGTTACTATATTTTAGGACAGAGGTAGTACAACATAAAAAAAAAAAACAGAAAATGCTCTGCAACCTGCTGTATGTATGATACCTGTTTATGTACCTCTAGACAGAAAGAAGAGCGTGCAGCTGGATTGGCCCAAACGCTACCAAATAATCGTCGGCCTAGCGAGAGGCCTCCTCTACCTCCACGAGGAATCCCCCGTCAAGATCATCCACCGAGACATCAAGGCAAGCAACGTGCTCCTCGACGAACAGCTGAACCCAAAGATTTCAGATTTCGGCATGGCAAGGCTCTTCCTCGAGGACGCCACGCACGTCAACACCTTCCGGATTTCCGGCACATAGTGAGTAATTACACCAGAACCCATCGTTGTTATTCACTTGATCCGTCCACAAAATCTCTGTGGTTGCGTGTGAGTACAGTAAGTGATACGTCGCAGTGGTTACATGGCTCCAGAGTACGCGATGAACGGCTACCTGTCTACGAAAACCGACGTTTTCAGCTTCGGGATGCTGGTGCTGGAGATCGTCAGCGGGAGGAAAAACATCGATAAACATCTCGACGCCGAAAAAACCGACCTCCTGAATTACGTAAGTACTCTGAAATAACAACACTGGATTCTGAAAATTTATCTTCCAGGAGCAGCATTGTGAGTTGTGACTGAATCTTTTTTTTTTCTGGAAATTATTCAGACATGGAAGCTGTCAGAGGAAGGGAGGCAGATGGAGATCGTGGACCCGGCGATGGCGGAGTGGGACGCCGACGAGGCGCGGCTGTGCGTGCAGCTCGGGCTGCTGTGCTGCCAGGCCGTGGTGTCGGACCGGCCGGACATGTACACCGTCCACCTCATGCTGTCCAGCGACTCCTTCACGCTGCCCAAGCCCGGCAAGCCGGCGATCCACGGCCGGGTCGGCCGGTGGATGAGCACCACCACCACGGCGTCCTCCGCCGCCTCCACCGCCAACACGGCCACCACGCTCGGCACCGACACGATGACGACGAGGGCGTCGGCGTCGGCGGCGGCGCTGGGCGGCATTGCCGAGGACGACTCCAGGAACTCCATCTCGATCTCCTTCACCACTGAAGGCCGGTAAAACAAGACAGGAATTCAACCATGGACAGTGCAAGTAGTAGGTTAGATAGATAGTGTCGGAATTTTTTATCCAAATAATTGTGTTTTGATTGATATGAACAGGAGTACAGTTGCTGTGAATTAATTGGCAGTGCATATGCACAGAATTTTGCATTTGGGGCAATCC
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| CDS seq | ATGCCGTGGTCGTGCGGCTGGTGCGGGAGGTGGAGGAGGAGCAGCGGCGGAAGAGGAGGAGGCGCTGATCGTGAGGCCAACGGCGGTGGCGGCGGCGGCGGCGGCGGGGCGGCGTCGGGGAGGGAGGAGGAGCAGTGGAGCCTCTTCATCGAGCTGCCCGTGCTGGAGGCCGCCACCCGTGGCTTCTCCGACGACAACCTCCTCGGCCGCGGCGGATTCGGCCCCGTCTACAAGGCTTGTTTCTTACTGCCATCTCATCGTCCCCTTTCGCCATGGCTTTGCTTTGCTGCTAGGCTGTTGCCCTGTTTTGCTTGTGGAATTCACCTAACATTAACAAAGACTGGTTTTTTATTGGTTGGTCAACAAAGCCATTCCTTGCTTTCCATTCTGATTTTGTCCTTTTCACCTACCAAAACGACACAAATGATTGATCTAACCCTGTCTATGTATGGGTAA
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| Protein seq | MPWSCGWCGRWRRSSGGRGGGADREANGGGGGGGGGAASGREEEQWSLFIELPVLEAATRGFSDDNLLGRGGFGPVYKACFLLPSHRPLSPWLCFAARLLPCFACGIHLTLTKTGFLLVGQQSHSLLSILILSFSPTKTTQMIDLTLSMYG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0127700 | OsNip_01t0127700-01 | Chr01 | 1518247 | 1521601 | + | RAP2018-11-26 | ||
| CDS seq | ATGCCGTGGTCGTGCGGCTGGTGCGGGAGGTGGAGGAGGAGCAGCGGCGGAAGAGGAGGAGGCGCTGATCGTGAGGCCAACGGCGGTGGCGGCGGCGGCGGCGGCGGGGCGGCGTCGGGGAGGGAGGAGGAGCAGTGGAGCCTCTTCATCGAGCTGCCCGTGCTGGAGGCCGCCACCCGTGGCTTCTCCGACGACAACCTCCTCGGCCGCGGCGGATTCGGCCCCGTCTACAAGGCTTGTTTCTTACTGCCATCTCATCGTCCCCTTTCGCCATGGCTTTGCTTTGCTGCTAGGCTGTTGCCCTGTTTTGCTTGTGGAATTCACCTAACATTAACAAAGACTGGTTTTTTATTGGTTGGTCAACAAAGCCATTCCTTGCTTTCCATTCTGATTTTGTCCTTTTCACCTACCAAAACGACACAAATGATTGATCTAACCCTGTCTATGTATGGGTAA
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| Protein seq | MPWSCGWCGRWRRSSGGRGGGADREANGGGGGGGGGAASGREEEQWSLFIELPVLEAATRGFSDDNLLGRGGFGPVYKACFLLPSHRPLSPWLCFAARLLPCFACGIHLTLTKTGFLLVGQQSHSLLSILILSFSPTKTTQMIDLTLSMYG |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0127700 | OsNip_01t0127700-02 | Chr01 | 1518827 | 1521615 | + | IsoSeq | ||
| CDS seq | TGGGTAATGGGTGTACTATCTTTTCCATGGACAAATATCTTTTCTACTGTTTGCTGGCTCTCTCTCTTTTTTTTTTCACCACTAATAACTGATTATACCTGCTCTGCTACTTTCAGACATCATTTCGTCAAATTAATATGCGATATTAGTTTTTTTCCTCTC |
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| Protein seq | WVMGVLSFPWTNIFSTVCWLSLFFFSPLITDYTCSATFRHHFVKLICDISFFPL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.450063 | 0.745210 | 1.092312 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0127700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0002030 | RBH | 0.149401 | 0.000000 | 1.029012 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0001910 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0002040 | RBH | 0.561902 | 1.008352 | 1.303140 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0001930 | RBH | 0.000000 | 0.045833 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0002000 | RBH | 2.235355 | 4.015699 | 5.105312 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0025300 | RBH | 2.4353845 | 10.1804115 | 1.4657045 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0001950 | RBH | 0.000000 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0025000 | SBH | 2.1046185 | 14.408624 | 0.470085 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0001840 | RBH | 0.159857 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0001990 | RBH | 0.150496 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0002040 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0002010 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0001900 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G002120 | RBH | 0.086938 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0001990 | RBH | 0.000000 | 6.116613 | 3.514502 |
