Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0018940 | OGI:12065240 | 12/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:23412457-23416726 | ||||||||
| Gene Symbol | TPR212, OsTPR212 | ||||||||||
| DNA seq | tttccacccgcttcctctcctctccaaaaccctccccaaaaaccacgcccccgccttccagaaccttctggaaccgcgatggccccctccccttccgacgtcgccctgcaggccgcccaggacggcaacctccgcctcctcaggagtaagtgcgccacccacttcgccgcccccatctctctcgtctcgtctcgggggtgatgagtcgatgaaccgtcgcctgattcctcgcgcatctcgcattgtttcggtccgggatcgggacgctcgcgtgatgtttcggggggttgttgcaagtttgatgctctgtgcggttactgttcttttttttttttttgtgggggaatgacgaattcgggtattgatttcgtacggtttgctggctagtttagatggaaatcctccaattcgaggatagatggattggatttactcgatttctacggtttggactcccatttgtgcggattgctgaattagctacagtatattttcccccctttttttaatctgtttgattcacttacatggctgtgttgttcggattttgctgctgctggtggaatcgatcctttgtagagatggcgaagaagttggatttgcgaggagtcaaggacaagaatggcctaagcgcgcttcacttcgctgcaagccatgggcacctggattgctgcaagttccttgtggaggaatcgggccttgatgtcaactcggttggtcacaaaggtgcgtgcaggcacatttggtgatgtattatttatttacgatttgagagcatgaaccaggagtttattgttttcggaagaatcccagagaggctactgtgtggctaacatctgaagtgccttcctccttgtaggtgaaacgccagtgttctatgccgcgatcgatgggaacgttcaggttttggggtaccttcttgatcatggtggtgacccggtgaaacccgaggagaggggctgcacgccgctgcacaatgcggcagagaatggtctgcttactgtgctcttcggttcacttgccgtatctggattttaaggatggcttatatggcatttcttgcatacaaatgacatgatatctgtctgtggattatcttgtttgaacctttgtgctaattttgttgtgccctagggcatgatgaggctgtaagactattgctgtccaaaggagttcatgtggatcctctgaattatcgtggggccccactgcacttggctgcctcaaaggaccgggttcaagccatgaaggttctgcttgaacatggtgctgatgtaagtggtggttctcgttgttatcgtcgcctgattacatgaaccaataaattgatgaaatgacaaatgcagtaaattttcttggcttgatgattaaatgtcttattttaaaaattagagcagaaacttgggaggcagtgggcttttctctcttattattttgtgatctgactggtcatttttttcaaattgtgattcttttccttttcagcccaacagagttatcaatcatatcttttcaccactcatgatggcatgctgcgggcactccttgaaatgcgtgaagctacttgttgaggtctggtatcatattcaaccaacttaatgtattctcatgtgtttttctgcttaaatgtgtcctggtttttaaaagatggttgggaggagatcccatattaacaaagccattgtgtcaatttgatgaaagttgatgtctttttagttctatattgagatattgtctctaaagctaccttactttgctatgtatattttcaaatcaataggctggcgctgatgtgaacggtaatagtaccaatggacctacccctttaactgaagcggttgatgacagtttaaccgatgttgtcaaattcttggtaggggctggagctgaccctaacattcctgacgaggtaactgatcctctgcctttgccccatactggttattgacatctcttaggattgaatgttatctgccttgcacatatggtgattgtatacttggctgataatctaaacaaaggtctcttaagaacatgagtgcattgtatagtttgacatgtcaactcaatattgtgtgtatgaactctgattaatatgtttggatttaattctgactacacttagatcagacattccatgattggcagctctagtagatagtgacagttcaccattgcatgttttggaattgtgaatttttaattcgatttaatccatacaataggtttacttatctcatatggtgaaatctctaggtccagagcatgctattggacttccattgttcaggatatttgtctaggctcacccatcagtacttgattggaataatttctctagcttttcttcgagctatgctctgttcctctaacagtttcgcttttcttgcaactgtttcccaaagagtgtcatagtgttgaactgatatcctttttactcttcatactgggatgttttccatcttccattttgtaatgtctgaccaattcaatgcaggaagggaggattcctatcatggtggcagcagctcgtggtcaacgagagcttgttgaaattctatttcctcggacaaaacctattccatgtctgccagattggaatgttgacgggataattagaactatgagaaccacacgtattgaacctcaggtatgtaggtgattgcttgcttcattctaacatatcttgtgttgctgtgttctaacttattcattgtgcctttttatgaacattttatgctgcattccccttgaatcagtcacaagggcataatagttagtttgccaactgcaacacatcgcatactgtttgaactttgtcatacctcatttttttgataatgttgtcatacctcatgcacataatcttcataaccaaacatgctatttgtatagtctgctattcctgtggaagaacaagtgtctgatgcaaagtcgaaaggaaaggaagcatttgcaaagggtgactaccttacagccatctacttctacaccctggtaaatgcacaagtgcacgacacaattattgtctgcttgatacagatttgagatttgggttataatccgaagctgattttcaattttagtatttgtttttatgattattttcgggggtatgtttgtcacttatgttgcccagctctcttttcatgattgctaagaaaagtaaaagttctacttaaaaatcatatttggaacagtacaaggttacacaagaaatagctaattctaaaaatatcaagtacgggaaacatgaaggggcttcagttttccttgtagccatacgacttttttttgctgaacaataaattgttaataacatgtgttggaccatccgtggtccttgtaaaagaacagtactctttattgtcatctacaagtaattacagtgatttctcatgatatgttaagttgaatgctagggggaaacgctgtattccgtaacctgttagatccactcaaatttactccaaataatcatgtgaaacagcacctgttggtcttgaatgcaggcaatggataaatccccacttgatgccaccttgtttgccaaccggagcctttgctggctgcggcagcgagaaggggacagagctttactggatgcacagcagtgcaggatgctgcgccctggttggtccaaggcatggtaccgtgagggcgcagctctcagtttcatgaaggtataacctcgtcatcgattttgctctcaaaatctagttacattttcacagctgcgcctcactcactcttgtggatggcctttgtctatttaaaggactacaaaggagcagtggacgcattcggggaggcactgaaacttgaccccatgaacgacgaggtcaagaacgcgttaaggtaatgctaaatttctcttctatcgctggcttgactgactcaatccacggaacattgacgtctaaaattgataggtgctcttgtaattccaaacagaatttttcactaaaaatttacatgaatgcagggaggcgatcgagtgtctgaagagagctgcttgatctgaagatccgaataacccttgagcagctactgcatcgtccttttggcctcacctcacctgtagactgcttcacatctttccactgtaactaccaacgactaggttttgcaaaccatgctgactgtttagctatctctgctgtcagagtacgtatggcaggaacatgcactgtctttcggtcagaaaccatatggtttgctaggtcatcatcacccatacatatgcagttgcactttcttccattttgtg
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| CDS seq | atggccccctccccttccgacgtcgccctgcaggccgcccaggacggcaacctccgcctcctcaggaagatggcgaagaagttggatttgcgaggagtcaaggacaagaatggcctaagcgcgcttcacttcgctgcaagccatgggcacctggattgctgcaagttccttgtggaggaatcgggccttgatgtcaactcggttggtcacaaaggtgaaacgccagtgttctatgccgcgatcgatgggaacgttcaggttttggggtaccttcttgatcatggtggtgacccggtgaaacccgaggagaggggctgcacgccgctgcacaatgcggcagagaatgggcatgatgaggctgtaagactattgctgtccaaaggagttcatgtggatcctctgaattatcgtggggccccactgcacttggctgcctcaaaggaccgggttcaagccatgaaggttctgcttgaacatggtgctgatcccaacagagttatcaatcatatcttttcaccactcatgatggcatgctgcgggcactccttgaaatgcgtgaagctacttgttgaggctggcgctgatgtgaacggtaatagtaccaatggacctacccctttaactgaagcggttgatgacagtttaaccgatgttgtcaaattcttggtaggggctggagctgaccctaacattcctgacgaggaagggaggattcctatcatggtggcagcagctcgtggtcaacgagagcttgttgaaattctatttcctcggacaaaacctattccatgtctgccagattggaatgttgacgggataattagaactatgagaaccacacgtattgaacctcaggcaatggataaatccccacttgatgccaccttgtttgccaaccggagcctttgctggctgcggcagcgagaaggggacagagctttactggatgcacagcagtgcaggatgctgcgccctggttggtccaaggcatggtaccgtgagggcgcagctctcagtttcatgaaggactacaaaggagcagtggacgcattcggggaggcactgaaacttgaccccatgaacgacgaggtcaagaacgcgttaagggaggcgatcgagtgtctgaagagagctgcttga
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| Protein seq | MAPSPSDVALQAAQDGNLRLLRKMAKKLDLRGVKDKNGLSALHFAASHGHLDCCKFLVEESGLDVNSVGHKGETPVFYAAIDGNVQVLGYLLDHGGDPVKPEERGCTPLHNAAENGHDEAVRLLLSKGVHVDPLNYRGAPLHLAASKDRVQAMKVLLEHGADPNRVINHIFSPLMMACCGHSLKCVKLLVEAGADVNGNSTNGPTPLTEAVDDSLTDVVKFLVGAGADPNIPDEEGRIPIMVAAARGQRELVEILFPRTKPIPCLPDWNVDGIIRTMRTTRIEPQAMDKSPLDATLFANRSLCWLRQREGDRALLDAQQCRMLRPGWSKAWYREGAALSFMKDYKGAVDAFGEALKLDPMNDEVKNALREAIECLKRAA |
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| Function | Ankyrin-1 [UniProtKB/Swiss-Prot:P16157] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0018940 | OsNaBo_12g0018940.01 | Chr12 | 23412457 | 23416726 | + | NAM | ||
| CDS seq | atggccccctccccttccgacgtcgccctgcaggccgcccaggacggcaacctccgcctcctcaggaagatggcgaagaagttggatttgcgaggagtcaaggacaagaatggcctaagcgcgcttcacttcgctgcaagccatgggcacctggattgctgcaagttccttgtggaggaatcgggccttgatgtcaactcggttggtcacaaaggtgaaacgccagtgttctatgccgcgatcgatgggaacgttcaggttttggggtaccttcttgatcatggtggtgacccggtgaaacccgaggagaggggctgcacgccgctgcacaatgcggcagagaatgggcatgatgaggctgtaagactattgctgtccaaaggagttcatgtggatcctctgaattatcgtggggccccactgcacttggctgcctcaaaggaccgggttcaagccatgaaggttctgcttgaacatggtgctgatcccaacagagttatcaatcatatcttttcaccactcatgatggcatgctgcgggcactccttgaaatgcgtgaagctacttgttgaggctggcgctgatgtgaacggtaatagtaccaatggacctacccctttaactgaagcggttgatgacagtttaaccgatgttgtcaaattcttggtaggggctggagctgaccctaacattcctgacgaggaagggaggattcctatcatggtggcagcagctcgtggtcaacgagagcttgttgaaattctatttcctcggacaaaacctattccatgtctgccagattggaatgttgacgggataattagaactatgagaaccacacgtattgaacctcaggcaatggataaatccccacttgatgccaccttgtttgccaaccggagcctttgctggctgcggcagcgagaaggggacagagctttactggatgcacagcagtgcaggatgctgcgccctggttggtccaaggcatggtaccgtgagggcgcagctctcagtttcatgaaggactacaaaggagcagtggacgcattcggggaggcactgaaacttgaccccatgaacgacgaggtcaagaacgcgttaagggaggcgatcgagtgtctgaagagagctgcttga
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| Protein seq | MAPSPSDVALQAAQDGNLRLLRKMAKKLDLRGVKDKNGLSALHFAASHGHLDCCKFLVEESGLDVNSVGHKGETPVFYAAIDGNVQVLGYLLDHGGDPVKPEERGCTPLHNAAENGHDEAVRLLLSKGVHVDPLNYRGAPLHLAASKDRVQAMKVLLEHGADPNRVINHIFSPLMMACCGHSLKCVKLLVEAGADVNGNSTNGPTPLTEAVDDSLTDVVKFLVGAGADPNIPDEEGRIPIMVAAARGQRELVEILFPRTKPIPCLPDWNVDGIIRTMRTTRIEPQAMDKSPLDATLFANRSLCWLRQREGDRALLDAQQCRMLRPGWSKAWYREGAALSFMKDYKGAVDAFGEALKLDPMNDEVKNALREAIECLKRAA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0018940 | OsNaBo_12g0018940.02 | Chr12 | 23412457 | 23416726 | + | NAM | ||
| CDS seq | atggccccctccccttccgacgtcgccctgcaggccgcccaggacggcaacctccgcctcctcaggaagatggcgaagaagttggatttgcgaggagtcaaggacaagaatggcctaagcgcgcttcacttcgctgcaagccatgggcacctggattgctgcaagttccttgtggaggaatcgggccttgatgtcaactcggttggtcacaaaggtgaaacgccagtgttctatgccgcgatcgatgggaacgttcaggttttggggtaccttcttgatcatggtggtgacccggtgaaacccgaggagaggggctgcacgccgctgcacaatgcggcagagaatgggcatgatgaggctgtaagactattgctgtccaaaggagttcatgtggatcctctgaattatcgtggggccccactgcacttggctgcctcaaaggaccgggttcaagccatgaaggttctgcttgaacatggtgctgatcccaacagagttatcaatcatatcttttcaccactcatgatggcatgctgcgggcactccttgaaatgcgtgaagctacttgttgaggctggcgctgatgtgaacggggctggagctgaccctaacattcctgacgaggcaatggataaatccccacttgatgccaccttgtttgccaaccggagcctttgctggctgcggcagcgagaaggggacagagctttactggatgcacagcagtgcaggatgctgcgccctggttggtccaaggcatggtaccgtgagggcgcagctctcagtttcatgaaggactacaaaggagcagtggacgcattcggggaggcactgaaacttgaccccatgaacgacgaggtcaagaacgcgttaagggaggcgatcgagtgtctgaagagagctgcttga
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| Protein seq | MAPSPSDVALQAAQDGNLRLLRKMAKKLDLRGVKDKNGLSALHFAASHGHLDCCKFLVEESGLDVNSVGHKGETPVFYAAIDGNVQVLGYLLDHGGDPVKPEERGCTPLHNAAENGHDEAVRLLLSKGVHVDPLNYRGAPLHLAASKDRVQAMKVLLEHGADPNRVINHIFSPLMMACCGHSLKCVKLLVEAGADVNGAGADPNIPDEAMDKSPLDATLFANRSLCWLRQREGDRALLDAQQCRMLRPGWSKAWYREGAALSFMKDYKGAVDAFGEALKLDPMNDEVKNALREAIECLKRAA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr12 | 23414237 | 23414365 | + | OsNaBo_12g0018940.01 | OsNaBo_12g0018940.01,OsNaBo_12g0018940.02 | All |
| SE | Chr12 | 23414365 | 23415969 | + | OsNaBo_12g0018940.01 | OsNaBo_12g0018940.01,OsNaBo_12g0018940.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.868563 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0600100 | RBH | 0.146853 | 0.150602 | 2.447361 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g40780 | RBH | 0.087377 | 0.103669 | 0.628659 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0600100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0019700 | RBH | 0.000000 | 0.852965 | 1.608590 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0019820 | RBH | 0.000000 | 0.0 | 1.243484 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0020140 | RBH | 0.148709 | 0.0 | 1.274304 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0019450 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0019060 | RBH | 0.207620 | 0.000000 | 5.677880 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0337600 | RBH | 0.965214 | 0.418421 | 17.753697 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0018930 | RBH | 0.033913 | 0.000000 | 0.128630 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0368000 | RBH | 1.3173265 | 0.6370245 | 5.7756065 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0019180 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0019410 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0019320 | RBH | 0.504782 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0019350 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0019540 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G019220 | RBH | 0.099799 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0018920 | RBH | 0.0 | 0.0 | 0.891442 |
