Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0018330 | OGI:12063720 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:22681014-22683607 | ||||||||
| Gene Symbol | HSA1B, hsa1(t), s(t), hst49 | ||||||||||
| DNA seq | TtaagatgctaaatttaaatcatactcatcggtgatgtcaattccatccaggattacttttgcaacAatccgtgcaataaaatctcctaggtgataaggtatcattaattcaatcccactgtcatccggaaacttttcttcctcattgtttgtctgcaaaaaggAaaaaaagaaaaaaaaagaagcaaacaaattaaaataataaataataaacccAaactaTttgatttgtcgaattcgatcaagtcccttaattattattgtctaatattaagatttgttttgtaactatacaatgtatccttcaaaagatggtgcacaacatttcataagaatgaaataatcaaatactagattggaccatgcatgattacttaatgagatactccgatccattggTtaattcaaaaagtcaaagtacacgtAaaacattaaatcaaaagtactttatataacttgcctcaaatcgatagtcttgatctgcaccatgcgtcattacgtctctagagaatctAaaagcttcaaaatttgttttcccataagtccttccatcttcttcagcttttgtaacgatgtccttaaaaaataccacattggacactttggttttccaaccacttgcgcaaacaGcagtttttatcgcagtttCccacttgtcattttgatcaccaccctgatagtttctatacagaccgATaatgaagcaacctctctcatatgatggcataaagcacatatgtgtctcaagaagtagtttgtactggTtagatAagacattttggattatctcgaggtttctaagacggaatgtaaaatcactgaagtaaggtggatatgtgaaacgcagtcgactatcccggcttctaaagacaagctctatttcttcaacaaaTttttccatatcatttttcattccctcatcaccaaaTttttttggctttttatgTttttgaacatgaccacggcaaaccttaaaatctgccaatgtgaaatccccattccaactcttgcctttcgagaaggcttccgtgaagcacttggtccaagttaacagaaataggcacccttcaggtgtgatctctagggaatggttttgatcagggagAagagccactgtcaaaaaggTttgtcgtgctgcattcacataTtgttgtagagtgatggtcctgcaatcacataaacatttttttaaagaaccaTTtttttaaaagaaaaaaagaatctcgcacaagctagtgattaagcacaggtgacagttgcagtattcttgatggttcttgcactggtataccagtttAatgggatggaatatggatgtgtttttttcaatatgtaagaataaaacatcctgcatctggtaacataacttgcagcatgttgcctccatgataaatatacaagaatcacaagaataggagattccgtacttaataaggattagcatgtgatgtgttacgacttatgagcatgctttcaacAaaatgagtgcactaTtttgatgttaacagagaaattacctacatctactggcatgatttgtaaactatctgcaTtcattttagtAaaactggagaaattttgaaacatctaagaatcatttgcaattcacagatcccaactgttcttcgagaatactccatagcatgacatcggtaacagaaggcattgatgcaattgcaactactacgtactagagtggttgtcactggagatgtcagcgactcgaaacatgctttgactggtcactccttcagccgggaattcaggttatagtcctgtcctttatatacttttttcactgggcaccttccttctatgatgtttccaacatctattattgttattatcaatttaatttttctcatcaactaataatttctttgcctattgacctcagtgggagaggtgccgcactggatattgttgtttccagtgtgcgagcttacctgagtgccctgaacaaagatGtccagttttgttgggcctatcaaggctaatagtgaagtactatctgaaagcaaaagagttcaagccacagaatgagtcttgacgttccttttgggttttcgtatccgatggttctatgTttcgcattcccaacaaggagtatgtgcttgttgaaacatggtttttccgtccccccaaaaaaacatggttttccgtttagtgcaactgcctcgatcgcctgcacaatcaccaaagcactccagcaaaaccatatataatttccatgaatgttgtcttaattttttttTAatttagttaaaaaaaccacacaaaaaataatatatataacagcagtgagcacatgcatgagttgtgtttttgagagatctAaaacattattggcgtacggaaaccaagctcaataatcccaccaaactaaagctcgcaaaacttgaccacagcatttgacgtcgaattaaagaaaagaaaaaaaaacacatccaacagcttagGAAATGTATAGCAAGGGAATCAGAAGAAGTTTCTTGTTCACTTACTCGTCAGCCATGGTCAACACTCCTTCACTTCACTTCCCCGCGCGCTCACCGGCCAGTAGATCACCACGGCTGCCTAGCTAGCTGATCTCT
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| CDS seq | ATGGCTGACGAgaccatcactctacaacaAtatgtgaatgcagcacgacaaAcctttttgacagtggctctTctccctgatcaaaaccattccctagagatcacacctgaagggtgcctatttctgttaacttggaccaagtgcttcacggaagccttctcgaaaggcaagagttggaatggggatttcacattggcagattttaaggtttgccgtggtcatgttcaaaaAcataaaaagccaaaaaaAtttggtgatgagggaatgaaaaatgatatggaaaaAtttgttgaagaaatagagcttgtctttagaagccgggatagtcgactgcgtttcacatatccaccttacttcagtgattttacattccgtcttagaaacctcgagataatccaaaatacaaacaatgaggaagaaaagtttccggatgacagtgggattgaattaatgataccttatcacctaggagattttattgcacggatTgttgcaaaagtaatcctggatggaattgacatcaccgatgagtatgatttaaatttagcatcttaA
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| Protein seq | MADETITLQQYVNAARQTFLTVALLPDQNHSLEITPEGCLFLLTWTKCFTEAFSKGKSWNGDFTLADFKVCRGHVQKHKKPKKFGDEGMKNDMEKFVEEIELVFRSRDSRLRFTYPPYFSDFTFRLRNLEIIQNTNNEEEKFPDDSGIELMIPYHLGDFIARIVAKVILDGIDITDEYDLNLAS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0018330 | OsNaBo_12g0018330.01 | Chr12 | 22681014 | 22683607 | - | NAM | ||
| CDS seq | ATGGCTGACGAgaccatcactctacaacaAtatgtgaatgcagcacgacaaAcctttttgacagtggctctTctccctgatcaaaaccattccctagagatcacacctgaagggtgcctatttctgttaacttggaccaagtgcttcacggaagccttctcgaaaggcaagagttggaatggggatttcacattggcagattttaaggtttgccgtggtcatgttcaaaaAcataaaaagccaaaaaaAtttggtgatgagggaatgaaaaatgatatggaaaaAtttgttgaagaaatagagcttgtctttagaagccgggatagtcgactgcgtttcacatatccaccttacttcagtgattttacattccgtcttagaaacctcgagataatccaaaatacaaacaatgaggaagaaaagtttccggatgacagtgggattgaattaatgataccttatcacctaggagattttattgcacggatTgttgcaaaagtaatcctggatggaattgacatcaccgatgagtatgatttaaatttagcatcttaA
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| Protein seq | MADETITLQQYVNAARQTFLTVALLPDQNHSLEITPEGCLFLLTWTKCFTEAFSKGKSWNGDFTLADFKVCRGHVQKHKKPKKFGDEGMKNDMEKFVEEIELVFRSRDSRLRFTYPPYFSDFTFRLRNLEIIQNTNNEEEKFPDDSGIELMIPYHLGDFIARIVAKVILDGIDITDEYDLNLAS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.719795 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0587100 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g39920 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0587100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0019140 | RBH | 0.0 | 0.0 | 1.476131 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0019250 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0019600 | RBH | 0.0 | 0.0 | 2.005602 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0018920 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0018510 | RBH | 0.0 | 0.0 | 3.384547 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0328100 | RBH | 0 | 0.0968895 | 32.680191 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0018380 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0357900 | RBH | 0 | 0.029573 | 164.6234285 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0018620 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0018850 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0018770 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0018800 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0018980 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G018630 | RBH | 0.0 | 0.0 | 1.032127 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0018210 | RBH | 0.0 | 0.0 | 0.0 |
