Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0017160 | OGI:12061130 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:21630711-21635874 | ||||||||
| Gene Symbol | SPL11, spl11, spl11*, OsPUB11, PUB11 | ||||||||||
| DNA seq | actagtagtaaagccatcagatttactgctcaaatccgcatttgaaacttctcttttacatatggtattacagtcttcaggatatacatgggaaaaccttgcattatgttgtctacatatagcagctgcatgtttaagaaactgtacacatctatctcaacatcctgggctgcctaaacaaattctcacaacctgggagtttcagcacacaagcatggaaaccttatagttcaagcttgtggaaaaacctcaattggtcggcatgccatgaatcatgagcagaatgcaaagtgaccaggatgctactcaatccgacatttgataggattgcgacgatgactcgctcatcatcgagttcatacaaccatagggtattgagacgctgggctgtccaattgttcagggatgtcattttccgggacctgcgcggaggcttgcgactgggactcctgttcctcttgttgctggactaggaatctgctcatccgctcgagcagctgcacagccttcctcttccccctatcggtgccgttcaaagccagctcccgcaacgggaccatgatcccgcactcctgcgcacgagctaaatgcacaagatggtgctctccactgcacagatgtagcatgacagccgcagcattctctcgatttctcggggttccgcttccgatcatctccacaagcacagggacaggctctgccgccccaatcgctgccttgccctcagggtggctggatagtatggagagtattgccatagcctcatccatgagcgctcctgtggggttggtcaccagccccatgatgagtggcacaaggccagctcgtatcgctcgtcccttgttcccttggtatatacacaagttgaagagagctgctgctgcatccttcttCccccgctggctaccctcgcctaacagcactacaagcgcagggatagcccccatccctccaattgtcactttatattcatcaatcactgagagactaaaaagtgtggccgcagcattctcccgtgcctccatgctgccattcttcagaacatggactatgcttgggacagcaccagatgatatgatgcttgccttattgtcctcatgtatggagaggttcagaagggcagtaactgcatgttcttgagtccgtaggtcagatgaggacagcagactcaatagcaagggaatggcacctgcctcagcaatgcaaatccggttgtttgcattccgctttgcaaggaggcgaagctctgcagcagctgatctctgctcctcagtgtctggagagcataacttagatagcagagcatcgatgttagcacgttcactcgaagagcatgcaggcgtaggcttgttaggctgggttgagcgctttggtggctccatcccattggtttcacaccactgggaaatgagacttctaaggacatagtttggcgtcaatgctgaggttgacatcttctgttgcgtggttgggcaggtatgatggcctgatgctatccatttctcaatgcatgcccgctcatatgtctacaaattaacaaatAaaaaatgtttatactaaaataactaTtttagttgcattgtgctttgggtcttaaaaataaagaggtagagattgctacctgccctgtagacactataacaggatccttcatcagctcaagagaaattggacatcggaactcgtcaggaatggttataggccTtgaatccccatttgaatccaataccctggaagccataggaggccccatgtcagggttctgtgtttgcacaaaatccttaatcttcttcagtagcattgacattctctcaatgtgttctcctgggtcctgaccaccgccggatgcgaccatctcatgtaaggcgagtgattcttgcgtgagatcggtgattgtcatcaagtgtagcttttctgacaatcttccaagaatagccagttctgcacttgggtcatagttcttgtcatatacagatagtagatcattgtagaattcatcgtcaggcatatcaatccgttcttttgctcttttgagctgtgcgtgcactaactcaacctggacaggatttggataattatctccaatgctggatttaagtgcttaatgataatagcaagaggaattcttttcagtgtgctgtcatcgttacctgctctctaacttcatctgatatatccaattcattgtacggaatgtcgcacagagcttgttccagctgcaaaattactccctgaaactttttcattacgctgtccctctcaagaacctgcaaaccagaatgggaaaagaaagaaagaaaaggctccttagctaaacaagtggttgtacagaaacaaatccacagcaattagtgtttcgaaaatcatgtttataaaaaatgatttataataagaacaaaatggtaatcaaaggtcaataagaatacaggtaaagcaggggaaaaaagagatagagtaacaccaacattaagagcaccatataaaaacattacaagctacaggatggacagtcagaggcctgtggttcaagtactgaagcaaagagcaagaaaaccaacctgaaatttaaactacaccaatataatcaagaaaatcccttgcttctgagcttgggaataaaatgagcaagcactttcaataacatcaaaatggagttgaagaaggaaaacgttgaatcaatacatgagtttgatagtcacataaagaaaactagacaatgactaccatatttctaacttgtaggttcatcccttCcctatgcacagccgtaaaagatatagtcggtgagtcatagaggtagtcctatcatcaggtacatgggcattccaacaggccAaaaaagaaaaacactttcaacgggtgcagaaatccactggtggggaccttaatgtttgagcctacaaacaatatagttatgatgtcgatcatctgaagttctctaatgacaaattttgttgatctgctctggttgcggcaacttattgtatttcagtataaaagtttaatgaaacctattgtgctcagaaataatatttttgggtcaatgtactcagcgagcattaagtggtaggtatagaacccaatttgattactctctactaagcaatattgcacttccaaaatgaaaatatgcttcttcagaccatttcatttgctagtttataaaaagaatttaacatgaaagcttccagaaaaccttttacttgctgctatttaattttctgacaaagcacgtggcctattcaactcctgaacAatttcaacaactacccagccagaagttagttcttaatccggaaaaatagtgcatgagcgatcaagatagtcatcattgttgtatgagcgatcaagatataaaataatgttcaaagactattgattaccaatattatgtaatagcactcataaagcatcccattgataacacggactcgatgaagggtttgaggccttgatagttacaacagatacagtcaaccagatttgaccaaagtaaagcaaacaattagtacaagttctttgtcccagtgaaaatagaaaaatgaaaatgtctgttatgattagatataccatacagataataatacagttatacttgacaaaagaacatagtactccaatcggtcagatttgatgtaccatactggtaggcagaaaaactggctagataatgattcaagaggtgaaatttatgatccaaaaggagcagttgaattgctcaggactggaagatcatacctctcctcaaaagaacaattcaaagctatagacaatatccactacaaacaacacacaagaaagtgaaagacatgatcatatggttgtcccaactaatccacaacaaatcttgcttttaccatggagaaagacatgatcatatgtctatccgttgcctctcccaactaatccacacaacaaaccgtgcttttaccatggggaataacatgtggagtacaaccatgaaggatgtagggcaagggcaagtagattcttgaatgtttcaacaagtaaagaaaccgatggaggaatccgtccaagcatttattctacagcaaatctatgacaaactcatggatgccctgagaaatgagaatgcatggatcatttacagatgacaagtttcgcagtagatccacAaaaaaaaatagcaaggagtttgatctgaaataaccaagttacagacgcccccaaagaccacaacttatggaccctaccaaaattgcaccacaaaagaagaacatatattggtcgcattgaacaagaagcaatctcagctcaacaagaaatctagctgaacaaatacaacacagctgcagaataaaattatggaaacctttctctctctcttttttgcgattaataagcaacagcaactaaatcatcctaaagcccctatgctaaaacaaaagaaaactcacttaacaatcacgacccctacaatttgttttgtgtttcaaacaactgcacatcaatatataTtTAATATTAGTCCACACGATTTATAAAAGCAAAAATTAAGCACGGATACACAGTAGACGAATCAGAATCATATTTTTGCATCCAAGAATCTTAATTTTTTTAGGAGACTAAAGTCAATAATAAACTTAATAACTAAAGCTGCACTTTATTTTTACCTAAGAATAGGTCATAATATCAAATCACCAATCCATAATAATAATAATAGTTCCTCCCAAAAAGGCAGCCAGGACCACGAATCGAACAAAATCAAGAAACCCACACGCGCGCACATACCAAGGAGATCCTGCTCCCCTCGCGGCCGAGCCGGAGCAGCGCGAGCGCCGCCTCGAGCGCGGCGGCGAGCGGCGCCAGCGCCCGCTCCTCCTCCTCCCCCTCCCCCTCCCCCCGCCTCCGCTCCCGGAGCTCCTCCACGAAGGGCCCCAGCAGCCGAATCCGCCGCGACAGCGCGAGCAGCTGCCGCCTGTACGCGTTCCGGTACTCCCCCGCCCCCGCCCCCGCCCCCGCCGCCACGGCCTCCACCGCCGCCGCCACCCTCTCCACCGCCGCCGCGGCACGCGCCTCCGGAGGCGGCGCCTCCCCCTCCTCCTCCTCCGCTCGGTCGCCGGCCATGGCGAGCGCGAGGCGAAGCAGCGGGAAGAAGAAGAGGAGGAGACCTCGGCTAGTGGCAGAATGGTAAATAGTGGGG
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| CDS seq | ATGGCCGGCGACCGAGCGGAGGAGGAGGAGGGGGAGGCGCCGCCTCCGGAGGCGCGTGCCGCGGCGGCGGTGGAGAGGGTGGCGGCGGCGGTGGAGGCCGTGGCGGCGGGGGCGGGGGCGGGGGCGGGGGAGTACCGGAACGCGTACAGGCGGCAGCTGCTCGCGCTGTCGCGGCGGATTCGGCTGCTGGGGCCCTTCGTGGAGGAGCTCCGGGAGCGGAGGCGGGGGGAGGGGGAGGGGGAGGAGGAGGAGCGGGCGCTGGCGCCGCTCGCCGCCGCGCTCGAGGCGGCGCTCGCGCTGCTCCGGCTCGGCCGCGAGGGGAGCAGGATCTCCTTGgttcttgagagggacagcgtaatgaaaaagtttcagggagtaattttgcagctggaacaagctctgtgcgacattccgtacaatgaattggatatatcagatgaagttagagagcaggttgagttagtgcacgcacagctcaaaagagcaaaagaacggattgatatgcctgacgatgaattctacaatgatctactatctgtatatgacaagaactatgacccaagtgcagaactggctattcttggaagattgtcagaaaagctacacttgatgacaatcaccgatctcacgcaagaatcactcgccttacatgagatggtcgcatccggcggtggtcaggacccaggagaacacattgagagaatgtcaatgctactgaagaagattaaggattttgtgcaaacacagaaccctgacatggggcctcctatggcttccagggtattggattcaaatggggattcaAggcctataaccattcctgacgagttccgatgtccaatttctcttgagctgatgaaggatcctgttatagtgtctacagggcagacatatgagcgggcatgcattgagaaatggatagcatcaggccatcatacctgcccaaccacgcaacagaagatgtcaacctcagcattgacgccaaactatgtccttagaagtctcatttcccagtggtgtgaaaccaatgggatggagccaccaaagcgctcaacccagcctaacaagcctacgcctgcatgctcttcgagtgaacgtgctaacatcgatgctctgctatctaagttatgctctccagacactgaggagcagagatcagctgctgcagagcttcgcctccttgcaaagcggaatgcaaacaaccggatttgcattgctgaggcaggtgccattcccttgctattgagtctgctgtcctcatctgacctacggactcaagaacatgcagttactgcccttctgaacctctccatacatgaggacaataaggcaagcatcatatcatctggtgctgtcccaagcatagtccatgttctgaagaatggcagcatggaggcacgggagaatgctgcggccacactttttagtctctcagtgattgatgaatataaagtgacaattggagggatgggggctatccctgcgcttgtagtgctgttaggcgagggtagccagcggggGaagaaggatgcagcagcagctctcttcaacttgtgtatataccaagggaacaagggacgagcgatacgagctggccttgtgccactcatcatggggctggtgaccaaccccacaggagcgctcatggatgaggctatggcaatactctccatactatccagccaccctgagggcaaggcagcgattggggcggcagagcctgtccctgtgcttgtggagatgatcggaagcggaaccccgagaaatcgagagaatgctgcggctgtcatgctacatctgtgcagtggagagcaccatcttgtgcatttagctcgtgcgcaggagtgcgggatcatggtcccgttgcgggagctggctttgaacggcaccgatagggggaagaggaaggctgtgcagctgctcgagcggatgagcagattcctagtccagcaacaagaggaacaggagtcccagtcgcaagcctccgcgcaggtcccggaaaatgacatccctgaacaattggacagcccagcgtctcaataccctatggttgtatga
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| Protein seq | MAGDRAEEEEGEAPPPEARAAAAVERVAAAVEAVAAGAGAGAGEYRNAYRRQLLALSRRIRLLGPFVEELRERRRGEGEGEEEERALAPLAAALEAALALLRLGREGSRISLVLERDSVMKKFQGVILQLEQALCDIPYNELDISDEVREQVELVHAQLKRAKERIDMPDDEFYNDLLSVYDKNYDPSAELAILGRLSEKLHLMTITDLTQESLALHEMVASGGGQDPGEHIERMSMLLKKIKDFVQTQNPDMGPPMASRVLDSNGDSRPITIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNYVLRSLISQWCETNGMEPPKRSTQPNKPTPACSSSERANIDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEHAVTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIGGMGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALMDEAMAILSILSSHPEGKAAIGAAEPVPVLVEMIGSGTPRNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPLRELALNGTDRGKRKAVQLLERMSRFLVQQQEEQESQSQASAQVPENDIPEQLDSPASQYPMVV |
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| Function | E3 ubiquitin-protein ligase SPL11 [UniProtKB/Swiss-Prot:Q0IMG9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0017160 | OsNaBo_12g0017160.01 | Chr12 | 21630780 | 21635874 | - | NAM | ||
| CDS seq | ATGGCCGGCGACCGAGCGGAGGAGGAGGAGGGGGAGGCGCCGCCTCCGGAGGCGCGTGCCGCGGCGGCGGTGGAGAGGGTGGCGGCGGCGGTGGAGGCCGTGGCGGCGGGGGCGGGGGCGGGGGCGGGGGAGTACCGGAACGCGTACAGGCGGCAGCTGCTCGCGCTGTCGCGGCGGATTCGGCTGCTGGGGCCCTTCGTGGAGGAGCTCCGGGAGCGGAGGCGGGGGGAGGGGGAGGGGGAGGAGGAGGAGCGGGCGCTGGCGCCGCTCGCCGCCGCGCTCGAGGCGGCGCTCGCGCTGCTCCGGCTCGGCCGCGAGGGGAGCAGGATCTCCTTGgttcttgagagggacagcgtaatgaaaaagtttcagggagtaattttgcagctggaacaagctctgtgcgacattccgtacaatgaattggatatatcagatgaagttagagagcaggttgagttagtgcacgcacagctcaaaagagcaaaagaacggattgatatgcctgacgatgaattctacaatgatctactatctgtatatgacaagaactatgacccaagtgcagaactggctattcttggaagattgtcagaaaagctacacttgatgacaatcaccgatctcacgcaagaatcactcgccttacatgagatggtcgcatccggcggtggtcaggacccaggagaacacattgagagaatgtcaatgctactgaagaagattaaggattttgtgcaaacacagaaccctgacatggggcctcctatggcttccagggtattggattcaaatggggattcaAggcctataaccattcctgacgagttccgatgtccaatttctcttgagctgatgaaggatcctgttatagtgtctacagggcagacatatgagcgggcatgcattgagaaatggatagcatcaggccatcatacctgcccaaccacgcaacagaagatgtcaacctcagcattgacgccaaactatgtccttagaagtctcatttcccagtggtgtgaaaccaatgggatggagccaccaaagcgctcaacccagcctaacaagcctacgcctgcatgctcttcgagtgaacgtgctaacatcgatgctctgctatctaagttatgctctccagacactgaggagcagagatcagctgctgcagagcttcgcctccttgcaaagcggaatgcaaacaaccggatttgcattgctgaggcaggtgccattcccttgctattgagtctgctgtcctcatctgacctacggactcaagaacatgcagttactgcccttctgaacctctccatacatgaggacaataaggcaagcatcatatcatctggtgctgtcccaagcatagtccatgttctgaagaatggcagcatggaggcacgggagaatgctgcggccacactttttagtctctcagtgattgatgaatataaagtgacaattggagggatgggggctatccctgcgcttgtagtgctgttaggcgagggtagccagcggggGaagaaggatgcagcagcagctctcttcaacttgtgtatataccaagggaacaagggacgagcgatacgagctggccttgtgccactcatcatggggctggtgaccaaccccacaggagcgctcatggatgaggctatggcaatactctccatactatccagccaccctgagggcaaggcagcgattggggcggcagagcctgtccctgtgcttgtggagatgatcggaagcggaaccccgagaaatcgagagaatgctgcggctgtcatgctacatctgtgcagtggagagcaccatcttgtgcatttagctcgtgcgcaggagtgcgggatcatggtcccgttgcgggagctggctttgaacggcaccgatagggggaagaggaaggctgtgcagctgctcgagcggatgagcagattcctagtccagcaacaagaggaacaggagtcccagtcgcaagcctccgcgcaggtcccggaaaatgacatccctgaacaattggacagcccagcgtctcaataccctatggttgtatga
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| Protein seq | MAGDRAEEEEGEAPPPEARAAAAVERVAAAVEAVAAGAGAGAGEYRNAYRRQLLALSRRIRLLGPFVEELRERRRGEGEGEEEERALAPLAAALEAALALLRLGREGSRISLVLERDSVMKKFQGVILQLEQALCDIPYNELDISDEVREQVELVHAQLKRAKERIDMPDDEFYNDLLSVYDKNYDPSAELAILGRLSEKLHLMTITDLTQESLALHEMVASGGGQDPGEHIERMSMLLKKIKDFVQTQNPDMGPPMASRVLDSNGDSRPITIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNYVLRSLISQWCETNGMEPPKRSTQPNKPTPACSSSERANIDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEHAVTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIGGMGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALMDEAMAILSILSSHPEGKAAIGAAEPVPVLVEMIGSGTPRNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPLRELALNGTDRGKRKAVQLLERMSRFLVQQQEEQESQSQASAQVPENDIPEQLDSPASQYPMVV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0017160 | OsNaBo_12g0017160.02 | Chr12 | 21630711 | 21631919 | - | IsoSeq | ||
| CDS seq | atgacatccctgaacaattggacagcccagcgtctcaataccctatggttgtatgaactcgatgatgagcgagtcatcgtcgcaatcctatcaaatgtcggattgagtagcatcctggtcactttgcattctgctcatgattcatggcatgccgaccaattgaggtttttccacaagcttgaa |
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| Protein seq | MTSLNNWTAQRLNTLWLYELDDERVIVAILSNVGLSSILVTLHSAHDSWHADQLRFFHKLE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.759552 | 58.613758 | 17.225214 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0570000 | RBH | 6.729723 | 6.024396 | 10.446102 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g38210 | RBH | 3.544848 | 3.070732 | 2.107082 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0570000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0017860 | RBH | 2.120134 | 29.372190 | 9.828182 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0017980 | RBH | 1.073601 | 9.376084 | 5.221476 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0018370 | RBH | 2.971519 | 15.082434 | 11.081307 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0017670 | RBH | 0.400499 | 0.439675 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0017250 | RBH | 14.058772 | 24.631222 | 34.539188 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0310900 | RBH | 2.508007 | 13.212744 | 6.903585 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0017130 | RBH | 0.707728 | 0.966235 | 1.602206 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0342000 | RBH | 8.6082575 | 52.3405495 | 10.546442 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0017350 | RBH | 0.746738 | 0.532959 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0017620 | RBH | 3.261953 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0017540 | RBH | 12.569766 | 14.984378 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0017570 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0017730 | RBH | 1.585549 | 5.888317 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G017500 | RBH | 0.821682 | 3.466557 | 2.778012 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
