Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
LOC_Os12g38210 OGI:12061130 | 16/16 Nipponbare | IRGSP 1.0 | MSU Chr12:23468190-23473382
Gene Symbol SPL11, spl11, spl11*, OsPUB11, PUB11
DNA seq

TTATAAAAAAAAATTCATATAAGACGAACAATCAAACGTTAGACAAAAAAACTCAGGAATTGAGTCTTTTTGGACAGAGGGAGTAGTTACTAGTAGTAAAGCCATCAGATTTACTGCTCAAATCCGCATTTGAAACTTCTCTTTTACATATGGTATTACAGTCTTCAGGATATACATGGGAAAACCTTGCATTATGTTGTCTACATATAGCAGCTGCATGTTTAAGAAACTGTACACATCTATCTCAACATCCTGGGCTGCCTAAACAAATTCTCACAACCTGGGAGTTTCAGCACACAAGCATGGAAACCTTATAGTTCAAGCTTGTGGAAAAACCTCAATTGGTCGGCATGCCATGAATCATGAGCAGAATGCAAAGTGACCAGGATGCTACTCAATCCGACATTTGATAGGATTGCGACGATGACTCGCTCATCATCGAGTTCATACAACCATAGGGTATTGAGACGCTGGGCTGTCCAATTGTTCAGGGATGTCATTTTCCGGGACCTGCTCAGGGGTGGCCTGAGGAGGGACCTGCGCGGAGGCTTGCGACTGGGACTCCTGTTCCTCTTGTTGCTGGACTAGGAATCTGCTCATCCGCTCGAGCAGCTGCACAGCCTTCCTCTTCCCCCTATCGGTGCCGTTCAAAGCCAGCTCCCGCAACGGGACCATGATCCCGCACTCCTGCGCACGAGCTAAATGCACAAGATGGTGCTCTCCACTGCACAGATGTAGCATGACAGCCGCAGCATTCTCTCGATTTCTCGGGGTTCCGCTTCCGATCATCTCCACAAGCACAGGGACAGGCTCTGCCGCCCCAATCGCTGCCTTGCCCTCAGGGTGGCTGGATAGTATGGAGAGTATTGCCATAGCCTCATCCATGAGCGCTCCTGTGGGGTTGGTCACCAGCCCCATGATGAGTGGCACAAGGCCAGCTCGAATCGCTCGTCCCTTGTTCCCTTGGTATATACACAAGTTGAAGAGAGCTGCTGCTGCATCCTTCTTCCCCCGCTGGCTACCCTCGCCTAACAGCACTACAAGCGCAGGGATAGCCCCCATCCCTCCAATTGTCACTTTATATTCATCAATCACTGAGAGACTAAAAAGTGTGGCCGCAGCATTCTCCCGTGCCTCCATGCTGCCATTCTTCAGAACATGGACTATGCTTGGGACAGCACCAGATGATATGATGCTTGCCTTATTGTCCTCATGTATGGAGAGGTTCAGAAGGGCAGTAACTGCATGTTCTTGAGTCCGTAGGTCAGATGAGGACAGCAGACTCAATAGCAAGGGAATGGCACCTGCCTCAGCAATGCAAATCCGGTTGTTTGCATTCCGCTTTGCAAGGAGGCGAAGCTCTGCAGCAGCTGATCTCTGCTCCTCAGTGTCTGGAGAGCATAACTTAGATAGCAGAGCATCGATGTTAGCACGTTCACTCGAAGAGCATGCAGGCGTAGGCTTGTTAGGCTGGGTTGAGCGCTTTGGTGGCTCCATCCCATTGGTTTCACACCACTGGGAAATGAGACTTCTAAGGACATAGTTTGGCGTCAATGCTGAGGTTGACATCTTCTGTTGCGTGGTTGGGCAGGTATGATGGCCTGATGCTATCCATTTCTCAATGCATGCCCGCTCATATGTCTACAAATTAACAAATAAAAAATGTTTATACTAAAATAACTATTTTAGTTGCATTGTGCTTTGGGTCTTAAAAATAAAGAGGTAGAGATTGCTACCTGCCCTGTAGACACTATAACAGGATCCTTCATCAGCTCAAGAGAAATTGGACATCGGAACTCGTCAGGAATGGTTATAGGCCTTGAATCCCCATTTGAATCCAATACCCTGGAAGCCATAGGAGGCCCCATGTCAGGGTTCTGTGTTTGCACAAAATCCTTAATCTTCTTCAGTAGCATTGACATTCTCTCAATGTGTTCTCCTGGGTCCTGACCACCGCCGGATGCGACCATCTCATGTAAGGCGAGTGATTCTTGCGTGAGATCGGTGATTGTCATCAAGTGTAGCTTTTCTGACAATCTTCCAAGAATAGCCAGTTCTGCACTTGGGTCATAGTTCTTGTCATATACAGATAGTAGATCATTGTAGAATTCATCGTCAGGCATATCAATCCGTTCTTTTGCTCTTTTGAGCTGTGCGTGCACTAACTCAACCTGGACAGGATTTGGATAATTATCTCCAATGCTGGATTTAAGTGCTTAATGATAATAGCAAGAGGAATTCTTTTCAGTGTGCTGTCATCGTTACCTGCTCTCTAACTTCATCTGATATATCCAATTCATTGTACGGAATGTCGCACAGAGCTTGTTCCAGCTGCAAAATTACTCCCTGAAACTTTTTCATTACGCTGTCCCTCTCAAGAACCTGCAAACCAGAATGGGAAAAGAAAGAAAGAAAAGGCTCCTTAGCTAAACAAGTGGTTGTACAGAAACAAATCCACAGCAATTAGTGTTTCGAAAAGCATGTTTATAAAAAATGATTTATAATAAGAACAAAATGGTAATCAAAGGTCAATAAGAATACAGGTAAAGCAGGGGAAAAAAGAGATAGAGTAACACCAACATTAAGAGCACCATATAAAAACATTACAAGCTACAGGATGGACAGTCAGAGGCCTGTGGTTCAAGTACTGAAGCAAAGAGCAAGAAAACCAACCTGAAATTTAAACTACACCAATATAATCAAGAAAATCCCTTGCTTCTGAGCTTGGGAATAAAATGAGCAAGCACTTTCAATAACATCAAAATGGAGTTGAAGAAGGAAAACGTTGAATCAATACATGAGTTTGATAGTCACATAAAGAAAACTAGACAATGACTACCATATTTCTAACTTGTAGGTTCATCCCTTCCCTATGCACAGCCGTAAAAGATATAGTCGGTGAGTCATAGAGGTAGTCCTATCATCAGGTACATGGGCATTCCAACAGGCCAAAAAAGAAAAACACTTTCAACGGGTGCAGAAATCCACTGGTGGGGACCTTAATGTTTGAGCCTACAAACAATATAGTTATGATGTCGATCATCTGAAGTTCTCTAATGACAAATTTTGTTGATCTGCTCTGGTTGCGGCAACTTATTGTATTTCAGTATAAAAGTTTAATGAAACCTATTGTGCTCAGAAATAATATTTTTGGGTCAATGTACTCAGCGAGCATTAAGTGGTAGGTATAGAACCCAATTTGATTACTCTCTACTAAGCAATATTGCACTTCCAAAATGAAAATATGCTTCTTCAGACCATTTCATTTGCTAGTTTATAAAAAGAATTTAACATGAAAGCTTCCAGAAAACCTTTTACTTGCTGCTATTTAATTTTCTGACAAAGCACGTGGCCTATTCAACTCCTGAACAATTTCAACAACTACCCAGCCAGAAGTTAGTTCTTAATCCGGAAAAATAGTGCATGAGCGATCAAGATAGTCATCATTGTTGTATGAGCGATCAAGATATAAAATAATGTTCAAAGACTATTGATTACCAATATTATGTCATAGCACTCATAAAGCATCCCATTGATAACACGGACTCGATGAAGGGTTTGAGGCCTTGATAGTTACAACAGATACAGTCAACCAGATTTGACCAAAGTAAAGCAAACAATTAGTACAAGTTCTTTGTCCCAGTGAAAATAGAAAAATGAAAATGTCTGTTATGATTAGATATACCATACAGATAATAATACAGTTATACTTGACAAAAGAACATAGTACTCCAATCGGTCAGATTTGATGTACCATACTGGTAGGCAGAAAAACTGGCTAGATAATGATTCAAGAGGTGAAATTTATGATCCAAAAGGAGCAGTTGAATTGCTCAGGACTGGAAGATCATACCTCTCCTCAAAAGAACAATTCAAAGCTATAGACAATATCCACTACAAACAACACACAAGAAAGTGAAAGACATGATCATATGGTTGTCCCAACTAATCCACAACAAATCTTGCTTTTACCATGGAGAAAGACATGATCATATGTCTATCCGTTGCCTCTCCCAACTAATCCACACAACAAACCGTGCTTTTACCATGGGGAATAACATGTGGAGTACAACCATGAAGGATGTAGGGCAAGGGCAAGTAGATTCTTGAATGTTTCAACAAGTAAAGAAACCGATGGAGGAATCCGTCCAAGCATTTATTCTACAGCAAATCTATGACAAACTCATGGATGCCCTGAGAAATGAGAATGCATGGATCATTTACAGATGACAAGTTTCGCAGTAGATCCACAAAAAAAAATAGCAAGGAGTTTGATCTGAAATAACCAAGTTACAGACGCCCCCAAAGACCACAACTTATGGACCCTACCAAAATTGCACCACAAAAGAAGAACATATATTGGTCGCATTGAACAAGAAGCAATCTCAGCTCAACAAGAAATCTAGCTGAACAAATACAACACAGCTGCAGAATAAAATTATGGAAACCTTTCTCTCTCTCTTTTTTGCGATTAATAAGCAACAGCAACTAAATCATCCTAAAGCCCCTATGCTAAAACAAAAGAAAACTCACTTAACAATCACGACCCCTACAATTTGTTTTGTGTTTCAAACAACTGCACATCAATATATATTAATATTAGTCCACACGATTTATAAAAGCAAAAATTAAGCACGGATACACAGTAGACGAATCAGAATCATATTTTTGCATCCAAGAATCTTAATTTTTTTTAGGAGACTAAAGTCAATAATAAACTTAATAACTAAAGCTGCACTTTATTTTTACCTAAGAACAGGTCATAATATCAAATCACCAATCCATAATAATAATAATAGTTCCTCCCAAAAAGGCAGCCAGGACCACGAATCGAACAAAATCAAGAAACCCACACGCGCGCACATACCAAGGAGATCCTGCTCCCCTCGCGGCCGAGCCGGAGCAGCGCGAGCGCCGCCTCGAGCGCGTCGGCGAGCGGCGCCAGCGCCCGCTCCTCCTCCTCCCCCTCCCCCTCCCCCCGCCTCCGCTCCCGGAGCTCCTCCACGAAGGGCCCCAGCAGCCGAATCCGCCGCCACCCTCTCCACCGCCGCCGCGGCACGCGCCTCCGGAGGCGGCGCCTCCCCCTCCTCCTCCTCCGCTCGGTCGCCGGCCATGGCGAGCGCGAGGCGAAGCAGCGGGAAGAAGAAGAGGAGGAGGAGACCTCGGCTAGTGGCAGAATGGTAAATAGTGGGG

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CDS seq

ATGAAAAAGTTTCAGGGAGTAATTTTGCAGCTGGAACAAGCTCTGTGCGACATTCCGTACAATGAATTGGATATATCAGATGAAGTTAGAGAGCAGGTTGAGTTAGTGCACGCACAGCTCAAAAGAGCAAAAGAACGGATTGATATGCCTGACGATGAATTCTACAATGATCTACTATCTGTATATGACAAGAACTATGACCCAAGTGCAGAACTGGCTATTCTTGGAAGATTGTCAGAAAAGCTACACTTGATGACAATCACCGATCTCACGCAAGAATCACTCGCCTTACATGAGATGGTCGCATCCGGCGGTGGTCAGGACCCAGGAGAACACATTGAGAGAATGTCAATGCTACTGAAGAAGATTAAGGATTTTGTGCAAACACAGAACCCTGACATGGGGCCTCCTATGGCTTCCAGGGTATTGGATTCAAATGGGGATTCAAGGCCTATAACCATTCCTGACGAGTTCCGATGTCCAATTTCTCTTGAGCTGATGAAGGATCCTGTTATAGTGTCTACAGGGCAGACATATGAGCGGGCATGCATTGAGAAATGGATAGCATCAGGCCATCATACCTGCCCAACCACGCAACAGAAGATGTCAACCTCAGCATTGACGCCAAACTATGTCCTTAGAAGTCTCATTTCCCAGTGGTGTGAAACCAATGGGATGGAGCCACCAAAGCGCTCAACCCAGCCTAACAAGCCTACGCCTGCATGCTCTTCGAGTGAACGTGCTAACATCGATGCTCTGCTATCTAAGTTATGCTCTCCAGACACTGAGGAGCAGAGATCAGCTGCTGCAGAGCTTCGCCTCCTTGCAAAGCGGAATGCAAACAACCGGATTTGCATTGCTGAGGCAGGTGCCATTCCCTTGCTATTGAGTCTGCTGTCCTCATCTGACCTACGGACTCAAGAACATGCAGTTACTGCCCTTCTGAACCTCTCCATACATGAGGACAATAAGGCAAGCATCATATCATCTGGTGCTGTCCCAAGCATAGTCCATGTTCTGAAGAATGGCAGCATGGAGGCACGGGAGAATGCTGCGGCCACACTTTTTAGTCTCTCAGTGATTGATGAATATAAAGTGACAATTGGAGGGATGGGGGCTATCCCTGCGCTTGTAGTGCTGTTAGGCGAGGGTAGCCAGCGGGGGAAGAAGGATGCAGCAGCAGCTCTCTTCAACTTGTGTATATACCAAGGGAACAAGGGACGAGCGATTCGAGCTGGCCTTGTGCCACTCATCATGGGGCTGGTGACCAACCCCACAGGAGCGCTCATGGATGAGGCTATGGCAATACTCTCCATACTATCCAGCCACCCTGAGGGCAAGGCAGCGATTGGGGCGGCAGAGCCTGTCCCTGTGCTTGTGGAGATGATCGGAAGCGGAACCCCGAGAAATCGAGAGAATGCTGCGGCTGTCATGCTACATCTGTGCAGTGGAGAGCACCATCTTGTGCATTTAGCTCGTGCGCAGGAGTGCGGGATCATGGTCCCGTTGCGGGAGCTGGCTTTGAACGGCACCGATAGGGGGAAGAGGAAGGCTGTGCAGCTGCTCGAGCGGATGAGCAGATTCCTAGTCCAGCAACAAGAGGAACAGGAGTCCCAGTCGCAAGCCTCCGCGCAGGTCCCTCCTCAGGCCACCCCTGAGCAGGTCCCGGAAAATGACATCCCTGAACAATTGGACAGCCCAGCGTCTCAATACCCTATGGTTGTATGA

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Protein seq

MKKFQGVILQLEQALCDIPYNELDISDEVREQVELVHAQLKRAKERIDMPDDEFYNDLLSVYDKNYDPSAELAILGRLSEKLHLMTITDLTQESLALHEMVASGGGQDPGEHIERMSMLLKKIKDFVQTQNPDMGPPMASRVLDSNGDSRPITIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNYVLRSLISQWCETNGMEPPKRSTQPNKPTPACSSSERANIDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEHAVTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIGGMGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALMDEAMAILSILSSHPEGKAAIGAAEPVPVLVEMIGSGTPRNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPLRELALNGTDRGKRKAVQLLERMSRFLVQQQEEQESQSQASAQVPPQATPEQVPENDIPEQLDSPASQYPMVV

Function E3 ubiquitin-protein ligase SPL11 [UniProtKB/Swiss-Prot:Q0IMG9]

Transcripts

Gene Transcript Chromosome Start End Strand Source
LOC_Os12g38210 LOC_Os12g38210.1 Chr12 23468190 23473382 - MSU_osa1r7
CDS seq

ATGAAAAAGTTTCAGGGAGTAATTTTGCAGCTGGAACAAGCTCTGTGCGACATTCCGTACAATGAATTGGATATATCAGATGAAGTTAGAGAGCAGGTTGAGTTAGTGCACGCACAGCTCAAAAGAGCAAAAGAACGGATTGATATGCCTGACGATGAATTCTACAATGATCTACTATCTGTATATGACAAGAACTATGACCCAAGTGCAGAACTGGCTATTCTTGGAAGATTGTCAGAAAAGCTACACTTGATGACAATCACCGATCTCACGCAAGAATCACTCGCCTTACATGAGATGGTCGCATCCGGCGGTGGTCAGGACCCAGGAGAACACATTGAGAGAATGTCAATGCTACTGAAGAAGATTAAGGATTTTGTGCAAACACAGAACCCTGACATGGGGCCTCCTATGGCTTCCAGGGTATTGGATTCAAATGGGGATTCAAGGCCTATAACCATTCCTGACGAGTTCCGATGTCCAATTTCTCTTGAGCTGATGAAGGATCCTGTTATAGTGTCTACAGGGCAGACATATGAGCGGGCATGCATTGAGAAATGGATAGCATCAGGCCATCATACCTGCCCAACCACGCAACAGAAGATGTCAACCTCAGCATTGACGCCAAACTATGTCCTTAGAAGTCTCATTTCCCAGTGGTGTGAAACCAATGGGATGGAGCCACCAAAGCGCTCAACCCAGCCTAACAAGCCTACGCCTGCATGCTCTTCGAGTGAACGTGCTAACATCGATGCTCTGCTATCTAAGTTATGCTCTCCAGACACTGAGGAGCAGAGATCAGCTGCTGCAGAGCTTCGCCTCCTTGCAAAGCGGAATGCAAACAACCGGATTTGCATTGCTGAGGCAGGTGCCATTCCCTTGCTATTGAGTCTGCTGTCCTCATCTGACCTACGGACTCAAGAACATGCAGTTACTGCCCTTCTGAACCTCTCCATACATGAGGACAATAAGGCAAGCATCATATCATCTGGTGCTGTCCCAAGCATAGTCCATGTTCTGAAGAATGGCAGCATGGAGGCACGGGAGAATGCTGCGGCCACACTTTTTAGTCTCTCAGTGATTGATGAATATAAAGTGACAATTGGAGGGATGGGGGCTATCCCTGCGCTTGTAGTGCTGTTAGGCGAGGGTAGCCAGCGGGGGAAGAAGGATGCAGCAGCAGCTCTCTTCAACTTGTGTATATACCAAGGGAACAAGGGACGAGCGATTCGAGCTGGCCTTGTGCCACTCATCATGGGGCTGGTGACCAACCCCACAGGAGCGCTCATGGATGAGGCTATGGCAATACTCTCCATACTATCCAGCCACCCTGAGGGCAAGGCAGCGATTGGGGCGGCAGAGCCTGTCCCTGTGCTTGTGGAGATGATCGGAAGCGGAACCCCGAGAAATCGAGAGAATGCTGCGGCTGTCATGCTACATCTGTGCAGTGGAGAGCACCATCTTGTGCATTTAGCTCGTGCGCAGGAGTGCGGGATCATGGTCCCGTTGCGGGAGCTGGCTTTGAACGGCACCGATAGGGGGAAGAGGAAGGCTGTGCAGCTGCTCGAGCGGATGAGCAGATTCCTAGTCCAGCAACAAGAGGAACAGGAGTCCCAGTCGCAAGCCTCCGCGCAGGTCCCTCCTCAGGCCACCCCTGAGCAGGTCCCGGAAAATGACATCCCTGAACAATTGGACAGCCCAGCGTCTCAATACCCTATGGTTGTATGA

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Protein seq

MKKFQGVILQLEQALCDIPYNELDISDEVREQVELVHAQLKRAKERIDMPDDEFYNDLLSVYDKNYDPSAELAILGRLSEKLHLMTITDLTQESLALHEMVASGGGQDPGEHIERMSMLLKKIKDFVQTQNPDMGPPMASRVLDSNGDSRPITIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNYVLRSLISQWCETNGMEPPKRSTQPNKPTPACSSSERANIDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEHAVTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIGGMGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALMDEAMAILSILSSHPEGKAAIGAAEPVPVLVEMIGSGTPRNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPLRELALNGTDRGKRKAVQLLERMSRFLVQQQEEQESQSQASAQVPPQATPEQVPENDIPEQLDSPASQYPMVV

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 3.544848 3.070732 2.107082

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_12g0570000 RBH 6.729723 6.024396 10.446102
Nipponbare | IRGSP 1.0 | MSU NA NA NA NA NA
Nipponbare | IRGSP 1.0 | RAP-db Os12g0570000 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_12g0017860 RBH 2.120134 29.372190 9.828182
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_12g0017980 RBH 1.073601 9.376084 5.221476
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_12g0018370 RBH 2.971519 15.082434 11.081307
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_12g0017670 RBH 0.400499 0.439675 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_12g0017250 RBH 14.058772 24.631222 34.539188
Minghui 63 | MH63RS3 | HZAU OsMH63_12G0310900 RBH 2.508007 13.212744 6.903585
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_12g0017130 RBH 0.707728 0.966235 1.602206
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_12G0342000 RBH 8.6082575 52.3405495 10.546442
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_12g0017350 RBH 0.746738 0.532959 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_12g0017620 RBH 3.261953 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_12g0017540 RBH 12.569766 14.984378 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_12g0017570 RBH 0.000000 0.0 0.000000
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_12g0017730 RBH 1.585549 5.888317 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_12G017500 RBH 0.821682 3.466557 2.778012
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_12g0017160 RBH 5.759552 58.613758 17.225214
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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